HMGN3-AS1

Summary

HMGN3-AS1 (HMGN3 antisense RNA 1, HGNC:48984) is a long non-coding RNA gene on chromosome 6q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48984
Approved symbol	HMGN3-AS1
Name	HMGN3 antisense RNA 1
Location	6q14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000270362
Ensembl biotype	lncRNA
Entrez	100288198
RNAcentral	URS000075B2F6 — lncRNA, 2993 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000604516, ENST00000760091

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000604516 — 2 exons

Exon	Start	End
ENSE00003547513	79233699	79233927
ENSE00003549931	79234062	79236797

Expression profiles

Bgee: expression breadth ubiquitous, 165 present calls, max score 76.87.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1795 / max 13.9922, expressed in 64 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
68666	0.1795	64

Top tissues by expression

229 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.87	gold quality
oviduct epithelium	UBERON:0004804	74.44	gold quality
gastrocnemius	UBERON:0001388	71.24	gold quality
endothelial cell	CL:0000115	71.04	silver quality
muscle of leg	UBERON:0001383	70.85	gold quality
ventricular zone	UBERON:0003053	70.38	gold quality
hindlimb stylopod muscle	UBERON:0004252	68.56	gold quality
calcaneal tendon	UBERON:0003701	68.14	gold quality
buccal mucosa cell	CL:0002336	66.58	silver quality
tendon	UBERON:0000043	66.00	gold quality
ganglionic eminence	UBERON:0004023	65.86	gold quality
islet of Langerhans	UBERON:0000006	65.75	gold quality
popliteal artery	UBERON:0002250	65.39	gold quality
tibial artery	UBERON:0007610	65.35	gold quality
cortical plate	UBERON:0005343	65.28	gold quality
right atrium auricular region	UBERON:0006631	65.25	gold quality
bone marrow cell	CL:0002092	65.17	silver quality
heart left ventricle	UBERON:0002084	64.88	gold quality
cardiac atrium	UBERON:0002081	64.61	gold quality
left coronary artery	UBERON:0001626	64.36	gold quality
cardiac ventricle	UBERON:0002082	64.18	gold quality
aorta	UBERON:0000947	64.01	gold quality
tendon of biceps brachii	UBERON:0008188	64.00	silver quality
heart	UBERON:0000948	63.91	gold quality
lower esophagus muscularis layer	UBERON:0035833	63.59	gold quality
lower esophagus	UBERON:0013473	63.56	gold quality
right coronary artery	UBERON:0001625	63.44	gold quality
right uterine tube	UBERON:0001302	63.40	gold quality
placenta	UBERON:0001987	63.34	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	63.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.