HOXB6
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Summary
HOXB6 (homeobox B6, HGNC:5117) is a protein-coding gene on chromosome 17q21.32, encoding Homeobox protein Hox-B6 (P17509). Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
This gene is a member of the Antp homeobox family and encodes a protein with a homeobox DNA-binding domain. It is included in a cluster of homeobox B genes located on chromosome 17. The encoded protein functions as a sequence-specific transcription factor that is involved in development, including that of lung and skin, and has been localized to both the nucleus and cytoplasm. Altered expression of this gene or a change in the subcellular localization of its protein is associated with some cases of acute myeloid leukemia and colorectal cancer.
Source: NCBI Gene 3216 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hypospadias (Limited, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 3 total
- MANE Select transcript:
NM_018952
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:5117 |
| Approved symbol | HOXB6 |
| Name | homeobox B6 |
| Location | 17q21.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000108511 |
| Ensembl biotype | protein_coding |
| OMIM | 142961 |
| Entrez | 3216 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 8 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000225648, ENST00000470193, ENST00000484302, ENST00000490419, ENST00000880387, ENST00000880388, ENST00000880389, ENST00000880390, ENST00000952645, ENST00000952646
RefSeq mRNA: 2 — MANE Select: NM_018952
NM_001369397, NM_018952
CCDS: CCDS11531
Canonical transcript exons
ENST00000225648 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000735996 | 48597736 | 48598228 |
| ENSE00001043800 | 48604862 | 48604986 |
| ENSE00001241471 | 48604480 | 48604615 |
| ENSE00002352501 | 48595751 | 48596672 |
Expression profiles
Bgee: expression breadth ubiquitous, 170 present calls, max score 97.21.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.7789 / max 296.0139, expressed in 1007 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 166707 | 3.7131 | 709 |
| 166699 | 1.7411 | 612 |
| 166702 | 1.4984 | 393 |
| 166700 | 0.8065 | 219 |
| 166703 | 0.3311 | 171 |
| 166701 | 0.2692 | 109 |
| 166698 | 0.2047 | 97 |
| 166704 | 0.1305 | 55 |
| 166708 | 0.0843 | 31 |
Top tissues by expression
284 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| corpus epididymis | UBERON:0004359 | 97.21 | gold quality |
| seminal vesicle | UBERON:0000998 | 95.75 | gold quality |
| metanephros cortex | UBERON:0010533 | 95.32 | gold quality |
| caput epididymis | UBERON:0004358 | 95.13 | gold quality |
| right uterine tube | UBERON:0001302 | 90.59 | gold quality |
| transverse colon | UBERON:0001157 | 89.46 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 88.94 | gold quality |
| cauda epididymis | UBERON:0004360 | 87.84 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 87.78 | gold quality |
| renal medulla | UBERON:0000362 | 87.31 | gold quality |
| endometrium | UBERON:0001295 | 87.19 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 87.19 | gold quality |
| rectum | UBERON:0001052 | 86.42 | gold quality |
| kidney | UBERON:0002113 | 84.96 | gold quality |
| colon | UBERON:0001155 | 84.09 | gold quality |
| large intestine | UBERON:0000059 | 83.73 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 83.59 | gold quality |
| intestine | UBERON:0000160 | 83.14 | gold quality |
| small intestine | UBERON:0002108 | 82.57 | gold quality |
| sigmoid colon | UBERON:0001159 | 82.32 | gold quality |
| metanephros | UBERON:0000081 | 81.80 | gold quality |
| omental fat pad | UBERON:0010414 | 80.84 | gold quality |
| ileal mucosa | UBERON:0000331 | 80.81 | gold quality |
| peritoneum | UBERON:0002358 | 80.79 | gold quality |
| cortex of kidney | UBERON:0001225 | 80.63 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 80.61 | gold quality |
| mucosa of stomach | UBERON:0001199 | 80.40 | gold quality |
| right adrenal gland | UBERON:0001233 | 79.95 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 79.32 | gold quality |
| endocervix | UBERON:0000458 | 79.25 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-10 | yes | 45.01 |
| E-MTAB-6701 | yes | 16.38 |
| E-ANND-3 | yes | 16.31 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
5 targets.
| Target | Regulation |
|---|---|
| HBA1 | Repression |
| HBG1 | Repression |
| HOXB6 | |
| KDR | |
| USF2 |
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA1500.1 | HOXB6 | HOX |
| MA1500.2 | HOXB6 | HOX |
JASPAR matrix evidence (PMIDs): PMID:18585359
Upstream regulators (CollecTRI, top): ARID4B, HOXB6
Literature-anchored findings (GeneRIF, showing 6)
- the homeodomain contains most or all of the important structures required for HOXB6 activity in blood cells. (PMID:15269212)
- Data show that inducible Hox genes are selectively sensitive to the inhibition of actin polymerization and that actin polymerization is required for the assembly of a transcription complex on the regulatory region of the Hox genes. (PMID:19477923)
- HOXB5, HOXB6, and HOXB7 are activated in Barrett esophagus, and the midcluster HOXB gene signature in BE most resembled the colon rather than other GI epithelia. (PMID:22603795)
- HOXA5, HOXB6, and GLTP were direct target genes of MIR196B in CRC cells. (PMID:29532406)
- ST8SIA6-AS1 promotes hepatocellular carcinoma by absorbing miR-5195-3p to regulate HOXB6. (PMID:32420798)
- An epigenome-wide association study of Alzheimer’s disease blood highlights robust DNA hypermethylation in the HOXB6 gene. (PMID:32745807)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | hoxb6a | ENSDARG00000010630 |
| mus_musculus | Hoxb6 | ENSMUSG00000000690 |
Paralogs (42): HOXA11 (ENSG00000005073), HOXC8 (ENSG00000037965), HOXA1 (ENSG00000105991), HOXA2 (ENSG00000105996), HOXA3 (ENSG00000105997), HOXA5 (ENSG00000106004), HOXA6 (ENSG00000106006), HOXA13 (ENSG00000106031), TLX1 (ENSG00000107807), TLX2 (ENSG00000115297), HOXB8 (ENSG00000120068), HOXB5 (ENSG00000120075), HOXB3 (ENSG00000120093), HOXB1 (ENSG00000120094), HOXA7 (ENSG00000122592), HOXC13 (ENSG00000123364), HOXC11 (ENSG00000123388), HOXC12 (ENSG00000123407), HOXD1 (ENSG00000128645), HOXD3 (ENSG00000128652), HOXD9 (ENSG00000128709), HOXD10 (ENSG00000128710), HOXD11 (ENSG00000128713), HOXD13 (ENSG00000128714), PDX1 (ENSG00000139515), HOXB13 (ENSG00000159184), TLX3 (ENSG00000164438), HOXD4 (ENSG00000170166), HOXD12 (ENSG00000170178), HOXB9 (ENSG00000170689), HOXC5 (ENSG00000172789), HOXB2 (ENSG00000173917), HOXD8 (ENSG00000175879), GSX2 (ENSG00000180613), HOXC9 (ENSG00000180806), HOXC10 (ENSG00000180818), HOXB4 (ENSG00000182742), HOXA4 (ENSG00000197576), HOXC6 (ENSG00000197757), HOXC4 (ENSG00000198353)
Protein
Protein identifiers
Homeobox protein Hox-B6 — P17509 (reviewed: P17509)
Alternative names: Homeobox protein Hox-2.2, Homeobox protein Hox-2B, Homeobox protein Hu-2
All UniProt accessions (1): P17509
UniProt curated annotations — full annotation on UniProt →
Function. Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
Subcellular location. Nucleus.
Similarity. Belongs to the Antp homeobox family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P17509-1 | 1 | yes |
| P17509-2 | 2, Homeobox-less |
RefSeq proteins (2): NP_001356326, NP_061825* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001356 | HD | Domain |
| IPR001827 | Homeobox_Antennapedia_CS | Conserved_site |
| IPR009057 | Homeodomain-like_sf | Homologous_superfamily |
| IPR017970 | Homeobox_CS | Conserved_site |
| IPR017995 | Homeobox_antennapedia | Family |
| IPR020479 | HD_metazoa | Domain |
| IPR050296 | Antp_homeobox | Family |
Pfam: PF00046
UniProt features (11 total): sequence conflict 5, splice variant 2, chain 1, DNA-binding region 1, short sequence motif 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P17509-F1 | 66.67 | 0.30 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 214
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 232 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, VALK_AML_WITH_FLT3_ITD, RRAGTTGT_UNKNOWN, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, MULLIGHAN_NPM1_SIGNATURE_3_UP, ACTACCT_MIR196A_MIR196B, BENPORATH_ES_WITH_H3K27ME3, GOBP_MYELOID_CELL_HOMEOSTASIS, PAX4_01, KANG_FLUOROURACIL_RESISTANCE_UP, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, NKX25_02, GOBP_EMBRYONIC_SKELETAL_SYSTEM_DEVELOPMENT, TTTGTAG_MIR520D, SP3_Q3
GO Biological Process (6): regulation of transcription by RNA polymerase II (GO:0006357), anterior/posterior pattern specification (GO:0009952), erythrocyte homeostasis (GO:0034101), embryonic skeletal system morphogenesis (GO:0048704), regulation of DNA-templated transcription (GO:0006355), embryonic skeletal system development (GO:0048706)
GO Molecular Function (7): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), RNA binding (GO:0003723), sequence-specific double-stranded DNA binding (GO:1990837), DNA binding (GO:0003677), DNA-binding transcription factor activity (GO:0003700), protein binding (GO:0005515)
GO Cellular Component (2): chromatin (GO:0000785), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of DNA-templated transcription | 2 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
| nucleic acid binding | 2 |
| transcription by RNA polymerase II | 1 |
| regionalization | 1 |
| myeloid cell homeostasis | 1 |
| embryonic organ morphogenesis | 1 |
| skeletal system morphogenesis | 1 |
| embryonic skeletal system development | 1 |
| DNA-templated transcription | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| skeletal system development | 1 |
| chordate embryonic development | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| chromatin | 1 |
| DNA-binding transcription factor activity | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| double-stranded DNA binding | 1 |
| sequence-specific DNA binding | 1 |
| transcription cis-regulatory region binding | 1 |
| transcription regulator activity | 1 |
| binding | 1 |
| chromosome | 1 |
| cellular anatomical structure | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
45 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HOXB6 | CLK3 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CLK3 | HOXB6 | psi-mi:“MI:0915”(physical association) | 0.720 |
| ANKRD17 | HOXB6 | psi-mi:“MI:0914”(association) | 0.640 |
| HOXB6 | SRPK2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HOXB6 | TEKT5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HOXB6 | NTAQ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HOXB6 | NEK6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GYS1 | HOXB6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NAGK | ZBTB43 | psi-mi:“MI:0914”(association) | 0.530 |
| HOXB6 | ALX4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| HOXB6 | TCF21 | psi-mi:“MI:0915”(physical association) | 0.370 |
| HOXB6 | TCEAL1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| HOXB6 | SAT1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PLSCR1 | HOXB6 | psi-mi:“MI:0915”(physical association) | 0.370 |
| HOXB6 | KRT15 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SLC15A3 | psi-mi:“MI:0914”(association) | 0.350 | |
| AHCYL2 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.350 |
| MAPK14 | PRKY | psi-mi:“MI:0914”(association) | 0.350 |
| SDE2 | HOXB6 | psi-mi:“MI:0914”(association) | 0.350 |
| CANX | HLA-A | psi-mi:“MI:0914”(association) | 0.350 |
| DDOST | ATL3 | psi-mi:“MI:0914”(association) | 0.350 |
| OST4 | ATL3 | psi-mi:“MI:0914”(association) | 0.350 |
| PSME3 | C11orf98 | psi-mi:“MI:0914”(association) | 0.350 |
| S100P | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| HOXB6 | TRAPPC3 | psi-mi:“MI:0914”(association) | 0.350 |
| TMED7 | ATP9A | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (66): HOXB6 (Two-hybrid), HOXB6 (Affinity Capture-MS), SAT1 (Two-hybrid), PLSCR1 (Two-hybrid), KRT15 (Two-hybrid), HOXB6 (Affinity Capture-MS), HOXB6 (Affinity Capture-MS), HOXB6 (Affinity Capture-MS), HOXB6 (Affinity Capture-RNA), HOXB6 (Affinity Capture-MS), HOXB6 (Affinity Capture-MS), HOXB6 (Two-hybrid), NEK6 (Two-hybrid), SRPK2 (Two-hybrid), TEKT5 (Two-hybrid)
ESM2 similar proteins: A1YER7, A1YF08, A1YFD8, A1YFY3, A1YG01, A1YG85, A2D4P8, A2D4R4, A2D5I1, A2D649, A2T6H5, A2T6X6, A2T6Z0, A2T748, A2T756, A2T7H5, A2T7J2, P06798, P09016, P09017, P09023, P09024, P10284, P10628, P13378, P14653, P17277, P17483, P17509, P18111, P18864, P23463, P23813, P31259, P31275, P31276, P31277, P31310, P47902, P50207
Diamond homologs: A1YER7, A1YFA5, A1YFD8, A1YFY3, A2D4P8, A2D5I1, A2D5K9, A2D5Y4, A2T6X6, A2T7F3, O13074, O42504, O57374, P02830, P02832, P02833, P04476, P06798, P07548, P09013, P09014, P09016, P09017, P09019, P09020, P09021, P09023, P09024, P09067, P09070, P09071, P09074, P09077, P09079, P09092, P09629, P09630, P10284, P10628, P10629
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| HOXB6 | “down-regulates quantity by repression” | HBA1 | “transcriptional regulation” |
| HOXB6 | “down-regulates quantity by repression” | HBG1 | “transcriptional regulation” |
| CSNK2B | unknown | HOXB6 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
3 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 3 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
650 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:48597734:A:AC | donor_gain | 1.0000 |
| 17:48597735:C:CC | donor_gain | 1.0000 |
| 17:48596671:ACCTG:A | acceptor_loss | 0.9900 |
| 17:48596673:CT:C | acceptor_loss | 0.9900 |
| 17:48596674:T:G | acceptor_loss | 0.9900 |
| 17:48597729:CACT:C | donor_loss | 0.9900 |
| 17:48597730:A:AC | donor_gain | 0.9900 |
| 17:48597731:C:CC | donor_gain | 0.9900 |
| 17:48597731:CTCA:C | donor_gain | 0.9900 |
| 17:48597732:TCACT:T | donor_loss | 0.9900 |
| 17:48597735:CT:C | donor_gain | 0.9900 |
| 17:48597735:CTG:C | donor_gain | 0.9900 |
| 17:48596673:C:CC | acceptor_gain | 0.9800 |
| 17:48597728:TCAC:T | donor_loss | 0.9800 |
| 17:48597730:AC:A | donor_loss | 0.9800 |
| 17:48597731:CT:C | donor_gain | 0.9800 |
| 17:48597735:CTGT:C | donor_gain | 0.9800 |
| 17:48596676:T:TC | acceptor_gain | 0.9700 |
| 17:48596676:T:C | acceptor_gain | 0.9600 |
| 17:48604475:CTTA:C | donor_loss | 0.9600 |
| 17:48604476:TTA:T | donor_loss | 0.9600 |
| 17:48604478:A:AG | donor_loss | 0.9600 |
| 17:48604479:C:T | donor_loss | 0.9600 |
| 17:48604907:TGAAG:T | donor_gain | 0.9600 |
| 17:48596679:C:CT | acceptor_gain | 0.9500 |
| 17:48597668:A:AC | donor_gain | 0.9400 |
| 17:48597669:C:CC | donor_gain | 0.9400 |
| 17:48597735:CTGTT:C | donor_gain | 0.9400 |
| 17:48596652:C:CT | acceptor_gain | 0.9300 |
| 17:48596661:C:CT | acceptor_gain | 0.9300 |
AlphaMissense
1445 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:48596482:T:A | K202N | 1.000 |
| 17:48596482:T:G | K202N | 1.000 |
| 17:48596483:T:A | K202I | 1.000 |
| 17:48596488:C:A | K200N | 1.000 |
| 17:48596488:C:G | K200N | 1.000 |
| 17:48596490:T:C | K200E | 1.000 |
| 17:48596491:C:A | M199I | 1.000 |
| 17:48596491:C:G | M199I | 1.000 |
| 17:48596491:C:T | M199I | 1.000 |
| 17:48596492:A:G | M199T | 1.000 |
| 17:48596492:A:T | M199K | 1.000 |
| 17:48596495:C:G | R198P | 1.000 |
| 17:48596495:C:T | R198H | 1.000 |
| 17:48596496:G:A | R198C | 1.000 |
| 17:48596496:G:C | R198G | 1.000 |
| 17:48596496:G:T | R198S | 1.000 |
| 17:48596498:C:A | R197L | 1.000 |
| 17:48596498:C:G | R197P | 1.000 |
| 17:48596499:G:C | R197G | 1.000 |
| 17:48596500:G:C | N196K | 1.000 |
| 17:48596500:G:T | N196K | 1.000 |
| 17:48596501:T:A | N196I | 1.000 |
| 17:48596501:T:C | N196S | 1.000 |
| 17:48596501:T:G | N196T | 1.000 |
| 17:48596502:T:C | N196D | 1.000 |
| 17:48596502:T:G | N196H | 1.000 |
| 17:48596503:C:A | Q195H | 1.000 |
| 17:48596503:C:G | Q195H | 1.000 |
| 17:48596504:T:G | Q195P | 1.000 |
| 17:48596505:G:T | Q195K | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000181428 (17:48596132 G>A,T), RS1000324884 (17:48605943 T>C), RS1000424920 (17:48605746 C>T), RS1000584508 (17:48600883 C>T), RS1000888125 (17:48604151 G>A), RS1001599896 (17:48605062 C>A), RS1001697430 (17:48598516 G>A), RS1001790857 (17:48598738 G>A,C), RS1001858320 (17:48606582 C>T), RS1002004249 (17:48600794 T>C), RS1002035371 (17:48600486 G>A), RS1002208267 (17:48603350 T>A), RS1002522056 (17:48603927 C>G), RS1002595827 (17:48603667 G>A), RS1002756365 (17:48597546 T>G)
Disease associations
OMIM: gene MIM:142961 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| hypospadias | Limited | Autosomal dominant |
Mondo (1): hypospadias (MONDO:0005345)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003177_5 | Childhood body mass index | 2.000000e-06 |
| GCST90002384_417 | Hemoglobin | 2.000000e-14 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0004509 | hemoglobin measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007021 | Hypospadias | C12.050.351.875.466; C12.100.500.494.400; C12.200.294.494.400; C12.200.706.516; C12.800.516; C16.131.939.516 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Estradiol | affects cotreatment, increases expression, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| testosterone enanthate | affects expression | 1 |
| apocarotenal | increases expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | decreases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| arsenite | increases methylation | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| ferrous chloride | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| azaspiracid | increases expression | 1 |
| abrine | decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Air Pollutants | affects methylation, increases abundance | 1 |
| Amiodarone | increases expression | 1 |
| Vehicle Emissions | increases abundance, affects methylation | 1 |
| Cytarabine | decreases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Mercury | increases expression | 1 |
| Nitrogen Dioxide | affects methylation, increases abundance | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Quercetin | decreases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Triclosan | increases expression | 1 |
| Valproic Acid | affects expression | 1 |
Cellosaurus cell lines
3 cell lines: 3 embryonic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A2Z0 | SEES3-1V human HOXB6, clone1 | Embryonic stem cell | Male |
| CVCL_A2Z1 | SEES3-1V human HOXB6, clone2 | Embryonic stem cell | Male |
| CVCL_A2Z2 | SEES3-1V human HOXB6, clone3 | Embryonic stem cell | Male |
Clinical trials (associated diseases)
88 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02848157 | PHASE4 | COMPLETED | Effects of Dexmedetomidine as Adjunct to Pudendal Block for Pediatric Penile Surgery |
| NCT02861950 | PHASE4 | COMPLETED | Does Caudal Block Increase the Incidence of Urethrocutaneous Fistula Formation Following Hypospadias Repair in Infants? |
| NCT03902249 | PHASE4 | COMPLETED | Effect of Intravenous Dexamethasone With Pudendal Nerve Block on Postoperative Pain in Pediatric Hypospadias Repair |
| NCT05708989 | PHASE4 | WITHDRAWN | Caudal vs. Pudendal Block in Peds GU |
| NCT05837000 | PHASE4 | UNKNOWN | Dexmedetomidine, Ketamine and Magnesium Sulphate in Caudal Block for Hypospadias Repair |
| NCT05922605 | PHASE4 | UNKNOWN | Analgesic Effects of Caudal S-ketamine for Supplementation of Ropivacaine Caudal Analgesia in Children With Hypospadias |
| NCT07121764 | PHASE4 | COMPLETED | Postoperative Pain Relief in Children: Comparing Caudal Bupivacaine Alone Versus Bupivacaine With Dexmedetomidine for Infra-Umbilical Surgeries Under General Anesthesia |
| NCT07240649 | PHASE4 | NOT_YET_RECRUITING | Outcomes From Hyperbaric Oxygen (HBO2) Treatment for Emerging Indications |
| NCT01370798 | PHASE3 | COMPLETED | Local Oestrogen Versus Placebo as Preoperative Treatment in Patients With Severe Hypospadias: Effects on Post-operative Complications |
| NCT04423107 | PHASE3 | UNKNOWN | Assessment of Postop Hypospadias Pain |
| NCT04826484 | PHASE3 | TERMINATED | Opioid Reduction Initiative During Outpatient Pediatric Urologic Procedures Using Exparel |
| NCT07197203 | PHASE3 | NOT_YET_RECRUITING | Comparison of Caudal Block and Sacral Erector Spinae Plane Block With Dexmedetomidine in Pediatric Penile Hypospadias Repair |
| NCT05253456 | PHASE2 | COMPLETED | Modified Second Layer Repair for Distal Penile Hypospadias |
| NCT04479371 | PHASE1 | WITHDRAWN | Liposomal Bupivacaine vs Standard Penile Block for Hypospadias Repair |
| NCT02752308 | PHASE2/PHASE3 | COMPLETED | Effectiveness of Caudal Epidural Block on Intraoperative Blood Loss During Hypospadias Repair |
| NCT04876976 | PHASE2/PHASE3 | COMPLETED | Isoamyl 2-Cyanoacrylate in the Urethro-cutaneous Fistula Repair |
| NCT05093166 | PHASE1/PHASE2 | TERMINATED | Clinical Trial to Assess the Safety and Efficacy of Investigational Product in Patients Due to Hypospadias Treatment Failure |
| NCT04196400 | EARLY_PHASE1 | UNKNOWN | The Role of Local Long Acting Corticosteroid Injection in Hypospadias Surgery. |
| NCT01762007 | Not specified | WITHDRAWN | The Change of the Detrusor Thickness After Hypospadias Repair - Comparison With the Normal Control Group |
| NCT01875640 | Not specified | COMPLETED | Decision Support for Parents Receiving Information About Child’s Rare Disease |
| NCT02040389 | Not specified | COMPLETED | Visual Guidelines and Tutoring in Pediatric Urological Surgery |
| NCT02096159 | Not specified | ACTIVE_NOT_RECRUITING | Prophylactic Antibiotics or Placebo After Hypospadias Repair |
| NCT02103712 | Not specified | COMPLETED | Long Term Outcome of Hypospadias Repair |
| NCT02162810 | Not specified | TERMINATED | Effect of Steroids on Post-Operative Complications Following Proximal Hypospadias Repair |
| NCT02164682 | Not specified | COMPLETED | The Effect of Caudal Block on the Postoperative Complications in Pediatric Patients After Hypospadias Repair |
| NCT02495090 | Not specified | COMPLETED | Hypospadias and Exome: Identification of New Genes for Familial Hypospadias |
| NCT02497963 | Not specified | UNKNOWN | Foreskin Graft Tubularized Incised Plate Urethroplasty vs Tubularized Incised Plate for Primary Hypospadias (FGTIP-TIP) |
| NCT02512887 | Not specified | UNKNOWN | Caudal vs Local Anesthesia in Hypospadias |
| NCT02593903 | Not specified | COMPLETED | Antibiotic Use Following Distal and Mid-shaft Hypospadias Repair |
| NCT02805491 | Not specified | COMPLETED | Influence of Pesticide Exposure on the Occurrence of Hypospadias in Newborns in Picardie |
| NCT02851290 | Not specified | COMPLETED | Effect of Caudal and Penile Block on Hypospadias Repair Complications |
| NCT03102554 | Not specified | ENROLLING_BY_INVITATION | Genetics of Differences of Sex Development and Hypospadias |
| NCT03275519 | Not specified | COMPLETED | Antibiotic Use in Distal Hypospadias Repair |
| NCT03575377 | Not specified | COMPLETED | Opioid Use, Storage, and Disposal Among Pediatric Patients After Surgery |
| NCT03593720 | Not specified | COMPLETED | Glans Size in Hypospadias Compared to Normal |
| NCT03677453 | Not specified | COMPLETED | Interactive Perioperative Teaching Platform (IPTP) |
| NCT03685955 | Not specified | WITHDRAWN | Efficacy of Amniotic Membranes in Complex Genitourinary Reconstruction |
| NCT03698721 | Not specified | NOT_YET_RECRUITING | Urothelium Tissue Engineering Using Biopsies From Transurethral Resection of Prostate |
| NCT03838458 | Not specified | COMPLETED | Molecular and Structural Comparison of Hypospadic and Normal Children Prepuces |
| NCT03911635 | Not specified | UNKNOWN | Selective Criteria and a Modified Technique of Applying URAGPI Technique for More Proximal Degree of Hypospadias |
Related Atlas pages
- Associated diseases: hypospadias
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hypospadias