HRK
gene geneOn this page
Also known as DP5
Summary
HRK (harakiri, BCL2 interacting protein, HGNC:5185) is a protein-coding gene on chromosome 12q24.22, encoding Activator of apoptosis harakiri (O00198). Promotes apoptosis.
This gene encodes a member of the BCL-2 protein family. Members of this family are involved in activating or inhibiting apoptosis. The encoded protein localizes to intracellular membranes. This protein promotes apoptosis by interacting with the apoptotic inhibitors BCL-2 and BCL-X(L) via its BH3 domain. Alternate splicing results in multiple transcript variants.
Source: NCBI Gene 8739 — RefSeq curated summary.
At a glance
- GWAS associations: 18
- Clinical variants (ClinVar): 22 total
- MANE Select transcript:
NM_003806
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:5185 |
| Approved symbol | HRK |
| Name | harakiri, BCL2 interacting protein |
| Location | 12q24.22 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DP5 |
| Ensembl gene | ENSG00000135116 |
| Ensembl biotype | protein_coding |
| OMIM | 603447 |
| Entrez | 8739 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 2 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000257572, ENST00000550505, ENST00000552092, ENST00000586941
RefSeq mRNA: 1 — MANE Select: NM_003806
NM_003806
CCDS: CCDS9181
Canonical transcript exons
ENST00000257572 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000918061 | 116880976 | 116881441 |
| ENSE00001092234 | 116856144 | 116861466 |
Expression profiles
Bgee: expression breadth ubiquitous, 161 present calls, max score 88.77.
FANTOM5 (CAGE): breadth broad, TPM avg 1.3061 / max 83.3489, expressed in 469 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 133486 | 0.7133 | 292 |
| 206917 | 0.3520 | 202 |
| 133483 | 0.1302 | 42 |
| 133485 | 0.0807 | 31 |
| 133484 | 0.0299 | 11 |
Top tissues by expression
272 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 88.77 | gold quality |
| endothelial cell | CL:0000115 | 86.76 | gold quality |
| pancreatic ductal cell | CL:0002079 | 81.63 | silver quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 81.47 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.24 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 78.01 | gold quality |
| Ammon’s horn | UBERON:0001954 | 74.56 | gold quality |
| prefrontal cortex | UBERON:0000451 | 74.32 | gold quality |
| cingulate cortex | UBERON:0003027 | 73.04 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 72.94 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 72.70 | silver quality |
| entorhinal cortex | UBERON:0002728 | 72.48 | gold quality |
| frontal cortex | UBERON:0001870 | 71.41 | gold quality |
| cerebral cortex | UBERON:0000956 | 71.39 | gold quality |
| sperm | CL:0000019 | 71.26 | gold quality |
| primary visual cortex | UBERON:0002436 | 71.17 | gold quality |
| neocortex | UBERON:0001950 | 71.04 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 70.84 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 70.60 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 70.17 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 70.15 | silver quality |
| male germ cell | CL:0000015 | 69.59 | gold quality |
| rectum | UBERON:0001052 | 69.59 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 69.53 | gold quality |
| postcentral gyrus | UBERON:0002581 | 69.04 | gold quality |
| right frontal lobe | UBERON:0002810 | 68.59 | gold quality |
| parietal lobe | UBERON:0001872 | 68.26 | gold quality |
| temporal lobe | UBERON:0001871 | 68.12 | gold quality |
| occipital lobe | UBERON:0002021 | 68.12 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 67.83 | silver quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.51 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AHR, ATF2, ATF4, E2F1, JUN, KCNIP3, PAX1, RPS3, TFAP2A, TFDP2
miRNA regulators (miRDB)
54 targeting HRK, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-450B-5P | 99.92 | 71.48 | 3175 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-498-3P | 99.91 | 71.27 | 1114 |
| HSA-MIR-5682 | 99.89 | 72.56 | 1005 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-765 | 99.84 | 68.24 | 2442 |
| HSA-MIR-544A | 99.84 | 68.66 | 1965 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-4495 | 99.82 | 72.08 | 3080 |
| HSA-MIR-7110-5P | 99.80 | 67.84 | 1712 |
| HSA-MIR-11181-3P | 99.75 | 66.38 | 2205 |
| HSA-MIR-1197 | 99.70 | 67.75 | 1027 |
| HSA-MIR-4472 | 99.56 | 66.08 | 1478 |
| HSA-MIR-3120-3P | 99.54 | 70.28 | 2669 |
Literature-anchored findings (GeneRIF, showing 21)
- Hrk is involved in the induction of apoptosis in RGCs after optic nerve transection. (PMID:11796190)
- apoptosis inducers as diverse as oncoprotein inhibitors and cell death receptor activators trigger Hrk expression via blockade of DREAM in leukemia cells (PMID:12217801)
- Data report that human oocytes and fragmenting preimplantation embryos possess transcripts encoding Harakiri and caspase-3. (PMID:12606589)
- HRK is a target of epigenetic inactivation in colorectal and gastric cancer (PMID:14695142)
- The interaction between HRK and cellular protein p32 was studied. HRK-induced apoptosis was suppresssed by the expression of p32 mutants lacking the N-terminal sequences 74-282 and the C-terminal sequences 1-221. (PMID:15031724)
- HRK appears to be inactivated principally by promoter hypermethylation in prostate cancers and decreased expression may play an important role in tumor progression by modulating apoptotic cell death (PMID:18008329)
- in response to PAHs, Ahr-mediated activation of the harakiri, BCL2 interacting protein (contains only BH3 domain), was necessary for execution of cell death. (PMID:18037991)
- Aberrant 5’-CpG methylation status and loss of heterozygosity on 12q13.1 are associated with HRK expression in human malignancies, including prostate cancers, astrocytic tumors and primary central nervous system lymphomas. Review. (PMID:19641496)
- analysis of a novel interaction between Bcl-2 members Diva and Harakiri (PMID:21209886)
- These results are used to propose a tentative structural model of how Harakiri works. (PMID:21731739)
- Data suggest that DP5 and PUMA/BBC3 (p53 up-regulated modulator of apoptosis/bcl-2-binding component 3) contribute to palmitate-induced apoptosis of pancreatic beta-cells via lipotoxic endoplasmic reticulum stress. (PMID:22773666)
- SUZ12 promotes the proliferation of human EOC cells by inhibiting apoptosis and HRK is a novel SUZ12 target gene whose upregulation contributes to apoptosis induced by SUZ12 knockdown. (PMID:22964433)
- The BH3-only protein harakiri (HRK) is transactivated by ATF4 in severe hypoxia through direct binding of ATF4 to the promoter region. (PMID:23090478)
- Diva binds peptides derived from the BH3 domain of several other proapoptotic Bcl-2 proteins, including mouse Harakiri, Bid, Bak and Bmf. (PMID:23192964)
- our findings suggest that induction of the BH3-only protein Hrk is a critical step in 2-ME activation of the JNK-induced apoptotic pathway, targeting mitochondria by liberating proapoptotic protein Bak. (PMID:23580416)
- miR-23a-3p, miR-23b-3p, and miR-149-5p, were downregulated by cytokines and selected for further studies. These miRNAs were found to regulate the expression of the proapoptotic Bcl-2 proteins DP5 and PUMA and consequent human beta-cell apoptosis. (PMID:27737950)
- The apoptosis phenotype was partly dependent on HRK upregulation, as HRK knockdown significantly abrogated the sensitization. KDM2B-silenced tumors exhibited slower growth in vivo. Taken together, our findings suggest a novel mechanism, where the key apoptosis components are under epigenetic control of KDM2B in glioblastoma multiforme cells. (PMID:28661478)
- In individuals with susceptible genetic backgrounds, Coxsackie B viral infection alters the epigenome to activate the pathological pathways leading to polymyositis-dermatomyositis via mitochondrial dysfunction and HRK up-regulation. (PMID:31135059)
- Characterization of an alternative BAK-binding site for BH3 peptides. (PMID:32620849)
- YAP-Mediated Repression of HRK Regulates Tumor Growth, Therapy Response, and Survival Under Tumor Environmental Stress in Neuroblastoma. (PMID:32900773)
- Upregulated lncHRK2:1 prompts nucleus pulposus cell senescence in intervertebral disc degeneration. (PMID:33174041)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Hrk | ENSMUSG00000046607 |
| rattus_norvegicus | Hrk | ENSRNOG00000079458 |
Protein
Protein identifiers
Activator of apoptosis harakiri — O00198 (reviewed: O00198)
Alternative names: BH3-interacting domain-containing protein 3, Neuronal death protein DP5
All UniProt accessions (2): O00198, K7EJY7
UniProt curated annotations — full annotation on UniProt →
Function. Promotes apoptosis.
Subunit / interactions. Interacts with BCL2 and BCL2L1. Interacts with C1QBP.
Subcellular location. Membrane. Mitochondrion.
Domain organisation. The BH3 motif is required for the induction of cell death.
RefSeq proteins (1): NP_003797* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR017249 | Apoptosis_activator_harakiri | Family |
| IPR020728 | Bcl2_BH3_motif_CS | Conserved_site |
Pfam: PF15196
UniProt features (5 total): helix 2, chain 1, transmembrane region 1, short sequence motif 1
Structure
Experimental structures (PDB)
7 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9UGP | X-RAY DIFFRACTION | 1.39 |
| 7P0U | X-RAY DIFFRACTION | 1.99 |
| 6XY4 | X-RAY DIFFRACTION | 2.05 |
| 9LI8 | X-RAY DIFFRACTION | 2.32 |
| 9LGU | X-RAY DIFFRACTION | 2.97 |
| 2L58 | SOLUTION NMR | |
| 2L5B | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O00198-F1 | 72.65 | 0.14 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 167 (showing top):
RNGTGGGC_UNKNOWN, BENPORATH_ES_WITH_H3K27ME3, SCHLESINGER_METHYLATED_DE_NOVO_IN_CANCER, TAL1ALPHAE47_01, LHX3_01, GOBP_POSITIVE_REGULATION_OF_ORGANELLE_ORGANIZATION, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOBP_POSITIVE_REGULATION_OF_RELEASE_OF_CYTOCHROME_C_FROM_MITOCHONDRIA, NKX61_01, GOBP_REGULATION_OF_MITOCHONDRION_ORGANIZATION, GOBP_POSITIVE_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOBP_APOPTOTIC_SIGNALING_PATHWAY, TGCTGAY_UNKNOWN, BILD_E2F3_ONCOGENIC_SIGNATURE, GOBP_REGULATION_OF_RELEASE_OF_CYTOCHROME_C_FROM_MITOCHONDRIA
GO Biological Process (7): apoptotic process (GO:0006915), positive regulation of protein-containing complex assembly (GO:0031334), positive regulation of apoptotic process (GO:0043065), positive regulation of neuron apoptotic process (GO:0043525), cellular response to potassium ion starvation (GO:0051365), positive regulation of release of cytochrome c from mitochondria (GO:0090200), regulation of apoptotic process (GO:0042981)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (2): mitochondrion (GO:0005739), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| apoptotic process | 2 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| regulation of protein-containing complex assembly | 1 |
| positive regulation of cellular component biogenesis | 1 |
| positive regulation of cellular component organization | 1 |
| protein-containing complex assembly | 1 |
| regulation of apoptotic process | 1 |
| positive regulation of programmed cell death | 1 |
| positive regulation of apoptotic process | 1 |
| regulation of neuron apoptotic process | 1 |
| neuron apoptotic process | 1 |
| cellular response to starvation | 1 |
| release of cytochrome c from mitochondria | 1 |
| positive regulation of organelle organization | 1 |
| regulation of release of cytochrome c from mitochondria | 1 |
| regulation of programmed cell death | 1 |
| binding | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
518 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| HRK | BCL2L1 | Q07817 | 997 |
| HRK | BCL2 | P10415 | 996 |
| HRK | MCL1 | Q07820 | 982 |
| HRK | BIK | Q13323 | 968 |
| HRK | BCL2L2-PABPN1 | Q92843 | 968 |
| HRK | BCL2A1 | Q16548 | 919 |
| HRK | TFDP3 | Q5H9I0 | 916 |
| HRK | PMAIP1 | Q13794 | 883 |
| HRK | BMF | Q96LC9 | 832 |
| HRK | BCL2L11 | O43521 | 805 |
| HRK | APC | P25054 | 786 |
| HRK | DPP8 | Q6V1X1 | 755 |
| HRK | BCL2L10 | Q9HD36 | 718 |
| HRK | BOK | Q9UMX3 | 709 |
| HRK | RTL10 | Q7L3V2 | 696 |
IntAct
17 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HRK | BCL2L1 | psi-mi:“MI:0915”(physical association) | 0.700 |
| BCL2L1 | HRK | psi-mi:“MI:0915”(physical association) | 0.700 |
| HRK | BCL2L1 | psi-mi:“MI:0407”(direct interaction) | 0.700 |
| HRK | C1QBP | psi-mi:“MI:0915”(physical association) | 0.600 |
| C1QBP | HRK | psi-mi:“MI:0915”(physical association) | 0.600 |
| C1QBP | HRK | psi-mi:“MI:0403”(colocalization) | 0.600 |
| BCL2L1 | HRK | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| BCL2L2 | HRK | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| HRK | Bcl2a1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| HRK | C1QBP | psi-mi:“MI:0915”(physical association) | 0.400 |
| Bcl2l1 | HRK | psi-mi:“MI:0915”(physical association) | 0.400 |
| MCL1 | HRK | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (24): HRK (Protein-peptide), HRK (Protein-peptide), HRK (Protein-peptide), HRK (Protein-peptide), HRK (Protein-peptide), HRK (Protein-peptide), HRK (FRET), BCL2 (Two-hybrid), BCL2L1 (Two-hybrid), BCL2 (Affinity Capture-Western), BCL2L1 (Affinity Capture-Western), BCL2L1 (Affinity Capture-Western), HRK (Affinity Capture-Western), HRK (Negative Genetic), HRK (Negative Genetic)
ESM2 similar proteins: A8E4L3, B9VXK4, E9Q5Z5, F5H9F9, F5HC16, O00198, O40955, P03189, P08314, P0C171, P10212, P10230, P13889, P16731, P16763, P16812, P17587, P27416, P27593, P27599, P36342, P36343, P36385, P89439, P89440, P89451, P89457, P89466, Q00660, Q1HVH8, Q2VPJ9, Q3KSU7, Q66665, Q66671, Q6P1X6, Q6SWA4, Q6UDG2, Q6VUC0, Q6VUP9, Q6X2U2
Diamond homologs: O00198, P62816, P62817
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| HRK | down-regulates | BCL2 | binding |
| HRK | down-regulates | BCL2L1 | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
22 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 20 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
764 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:116861370:T:TA | donor_gain | 1.0000 |
| 12:116880971:CGTA:C | donor_loss | 0.9900 |
| 12:116880972:GTAC:G | donor_loss | 0.9900 |
| 12:116880973:TACC:T | donor_loss | 0.9900 |
| 12:116880974:A:T | donor_loss | 0.9900 |
| 12:116880975:C:A | donor_loss | 0.9900 |
| 12:116880901:T:A | donor_gain | 0.9800 |
| 12:116861313:C:A | donor_gain | 0.9700 |
| 12:116861364:T:A | donor_gain | 0.9700 |
| 12:116861312:T:TA | donor_gain | 0.9600 |
| 12:116863175:A:AC | donor_gain | 0.9500 |
| 12:116874985:T:TA | acceptor_gain | 0.9500 |
| 12:116861462:CCAAC:C | acceptor_gain | 0.9400 |
| 12:116861463:CAACC:C | acceptor_gain | 0.9400 |
| 12:116879072:CACA:C | donor_gain | 0.9400 |
| 12:116861465:ACCTG:A | acceptor_loss | 0.9300 |
| 12:116861466:CCT:C | acceptor_loss | 0.9300 |
| 12:116861468:T:G | acceptor_loss | 0.9300 |
| 12:116875363:A:AC | donor_gain | 0.9300 |
| 12:116879072:CA:C | donor_gain | 0.9300 |
| 12:116880893:TGCC:T | donor_gain | 0.9300 |
| 12:116880970:GCGT:G | donor_loss | 0.9200 |
| 12:116879071:A:AC | donor_gain | 0.9100 |
| 12:116879072:C:CC | donor_gain | 0.9100 |
| 12:116879451:T:TA | donor_gain | 0.9100 |
| 12:116860637:C:CT | donor_gain | 0.9000 |
| 12:116861463:CAAC:C | acceptor_gain | 0.9000 |
| 12:116879380:T:TA | donor_gain | 0.9000 |
| 12:116880894:G:A | donor_gain | 0.9000 |
| 12:116880974:A:AC | donor_gain | 0.9000 |
AlphaMissense
557 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:116881198:A:T | L37H | 0.981 |
| 12:116881187:C:G | G41R | 0.978 |
| 12:116881187:C:A | G41C | 0.976 |
| 12:116881084:G:T | A75D | 0.975 |
| 12:116881186:C:A | G41V | 0.972 |
| 12:116881186:C:T | G41D | 0.964 |
| 12:116881198:A:G | L37P | 0.964 |
| 12:116881177:A:G | L44P | 0.951 |
| 12:116881072:G:T | A79E | 0.945 |
| 12:116881298:A:G | C4R | 0.933 |
| 12:116881087:G:T | A74E | 0.930 |
| 12:116881296:G:C | C4W | 0.927 |
| 12:116881194:C:A | K38N | 0.923 |
| 12:116881194:C:G | K38N | 0.923 |
| 12:116881063:G:T | A82E | 0.922 |
| 12:116881081:G:T | A76E | 0.918 |
| 12:116881260:G:C | C16W | 0.916 |
| 12:116881097:A:G | W71R | 0.914 |
| 12:116881097:A:T | W71R | 0.914 |
| 12:116881302:G:C | C2W | 0.914 |
| 12:116881254:G:C | C18W | 0.912 |
| 12:116881069:G:T | A80E | 0.908 |
| 12:116881183:T:A | D42V | 0.906 |
| 12:116881184:C:G | D42H | 0.905 |
| 12:116881075:A:T | V78E | 0.902 |
| 12:116881189:A:G | L40P | 0.898 |
| 12:116881256:A:G | C18R | 0.896 |
| 12:116881091:A:G | C73R | 0.891 |
| 12:116881168:C:G | R47P | 0.889 |
| 12:116881054:A:G | L85P | 0.888 |
dbSNP variants (sampled 300 via entrez): RS1000008855 (12:116860850 G>A), RS1000081853 (12:116860512 C>G,T), RS1000167863 (12:116881270 G>A,C,T), RS1000233369 (12:116866618 T>C), RS1000365510 (12:116873570 A>C,T), RS1000439156 (12:116873171 T>A,C), RS1000475544 (12:116880072 C>A), RS1000557915 (12:116870179 A>C), RS1000677056 (12:116866396 A>G), RS1000686906 (12:116881450 T>C), RS1000703921 (12:116871758 G>A), RS1000888148 (12:116878589 C>A), RS1000979364 (12:116865413 G>A), RS1001212563 (12:116878845 A>C), RS1001655659 (12:116859454 A>G)
Disease associations
OMIM: gene MIM:603447 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
18 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001280_5 | Alzheimer’s disease (age of onset) | 3.000000e-06 |
| GCST001481_2 | Brain structure | 7.000000e-16 |
| GCST001485_4 | Hippocampal volume | 3.000000e-11 |
| GCST002756_12 | Subcortical brain region volumes | 7.000000e-10 |
| GCST002756_6 | Subcortical brain region volumes | 3.000000e-15 |
| GCST003961_1 | Hippocampal volume | 2.000000e-25 |
| GCST006870_7 | Hippocampal tail volume | 2.000000e-19 |
| GCST006871_6 | Total hippocampal volume | 2.000000e-35 |
| GCST006872_1 | Presubiculum volume (corrected for total hippocampal volume) | 2.000000e-15 |
| GCST006885_1 | Presubiculum volume | 1.000000e-11 |
| GCST006886_1 | Subiculum volume | 1.000000e-17 |
| GCST006887_1 | Hippocampal subfield CA1 volume | 7.000000e-28 |
| GCST006888_3 | Hippocampal subfield CA3 volume | 2.000000e-15 |
| GCST006889_2 | Hippocampal subfield CA4 volume | 2.000000e-24 |
| GCST006890_1 | Dentate gyrus granule cell layer volume | 9.000000e-26 |
| GCST006891_5 | Dentate gyrus molecular layer volume | 2.000000e-25 |
| GCST006894_1 | HATA volume | 4.000000e-13 |
| GCST010703_5 | Brain morphology (MOSTest) | 4.000000e-32 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004847 | age at onset |
| EFO:0005035 | hippocampal volume |
| EFO:0009394 | hippocampal CA1 volume |
| EFO:0009395 | hippocampal CA3 volume |
| EFO:0009396 | hippocampal CA4 volume |
| EFO:0009401 | hippocampal amigdala transition area volume |
| EFO:0004346 | neuroimaging measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
71 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases methylation, decreases expression, increases expression, affects cotreatment | 3 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| sphingosine 1-phosphate | increases expression, decreases reaction | 2 |
| entinostat | affects cotreatment, increases expression | 2 |
| 2,2’,4,4’-tetrabromodiphenyl ether | increases expression | 2 |
| Arsenic Trioxide | increases expression | 2 |
| Leflunomide | increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Cisplatin | affects expression, affects cotreatment, decreases expression | 2 |
| Copper | affects binding, increases expression, decreases expression | 2 |
| Rotenone | affects response to substance, increases expression | 2 |
| Smoke | increases expression, decreases expression | 2 |
| Valproic Acid | increases expression, decreases expression | 2 |
| Asbestos, Crocidolite | decreases expression, affects expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, increases expression | 2 |
| afuresertib | increases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| decabromobiphenyl ether | affects expression | 1 |
| trichostatin A | increases expression | 1 |
| o,p’-DDT | increases expression | 1 |
| 3,3’-diindolylmethane | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| pentanal | increases expression | 1 |
| cordycepin | affects expression | 1 |
| N-acetylsphingosine | increases expression, decreases reaction | 1 |
| usnic acid | increases expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.