HS1BP3-IT1

Summary

HS1BP3-IT1 (HS1BP3 intronic transcript 1, HGNC:41474) is a long non-coding RNA gene on chromosome 2p24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41474
Approved symbol	HS1BP3-IT1
Name	HS1BP3 intronic transcript 1
Location	2p24.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231948
Ensembl biotype	lncRNA
Entrez	100874343
RNAcentral	URS000058881B — lncRNA, 600 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000449391

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000449391 — 2 exons

Exon	Start	End
ENSE00001666290	20590775	20591247
ENSE00001767191	20592422	20592548

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 81.21.

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
liver	UBERON:0002107	81.21	gold quality
right lobe of liver	UBERON:0001114	79.32	gold quality
colonic epithelium	UBERON:0000397	75.49	gold quality
bone marrow cell	CL:0002092	74.92	gold quality
stromal cell of endometrium	CL:0002255	69.17	gold quality
cortical plate	UBERON:0005343	67.44	gold quality
ventricular zone	UBERON:0003053	64.59	gold quality
right hemisphere of cerebellum	UBERON:0014890	64.38	gold quality
mucosa of stomach	UBERON:0001199	63.56	gold quality
cerebellar hemisphere	UBERON:0002245	63.18	gold quality
ganglionic eminence	UBERON:0004023	63.18	gold quality
cerebellum	UBERON:0002037	63.12	gold quality
cerebellar cortex	UBERON:0002129	63.12	gold quality
right coronary artery	UBERON:0001625	62.91	gold quality
descending thoracic aorta	UBERON:0002345	62.67	gold quality
popliteal artery	UBERON:0002250	62.28	gold quality
right adrenal gland	UBERON:0001233	62.22	gold quality
tibial artery	UBERON:0007610	62.22	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	61.94	gold quality
spleen	UBERON:0002106	61.47	gold quality
lower esophagus muscularis layer	UBERON:0035833	61.38	gold quality
urinary bladder	UBERON:0001255	61.33	gold quality
lower esophagus	UBERON:0013473	61.33	gold quality
left adrenal gland cortex	UBERON:0035825	61.19	gold quality
left adrenal gland	UBERON:0001234	61.11	gold quality
gall bladder	UBERON:0002110	61.07	gold quality
right adrenal gland cortex	UBERON:0035827	60.94	gold quality
left coronary artery	UBERON:0001626	60.92	gold quality
adrenal gland	UBERON:0002369	60.75	gold quality
subcutaneous adipose tissue	UBERON:0002190	60.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.