HSALR1

Summary

HSALR1 (HSP90AB1 associated lncRNA 1, HGNC:56095) is a long non-coding RNA gene on chromosome 16q24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56095
Approved symbol	HSALR1
Name	HSP90AB1 associated lncRNA 1
Location	16q24.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224888
Ensembl biotype	lncRNA
OMIM	621316
Entrez	100289580
RNAcentral	URS000075EEBC — lncRNA, 3776 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000440406, ENST00000567968

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000440406 — 3 exons

Exon	Start	End
ENSE00001721154	88737821	88738405
ENSE00002329244	88731180	88731448
ENSE00002601428	88738504	88739188

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 67.76.

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	67.76	silver quality
bone marrow cell	CL:0002092	65.27	silver quality
sural nerve	UBERON:0015488	64.65	silver quality
cortical plate	UBERON:0005343	61.67	gold quality
bone marrow	UBERON:0002371	60.40	gold quality
prefrontal cortex	UBERON:0000451	60.14	gold quality
ventricular zone	UBERON:0003053	59.52	silver quality
urinary bladder	UBERON:0001255	59.39	gold quality
mucosa of stomach	UBERON:0001199	59.24	gold quality
frontal cortex	UBERON:0001870	59.23	gold quality
muscle layer of sigmoid colon	UBERON:0035805	59.06	gold quality
right frontal lobe	UBERON:0002810	58.13	gold quality
stromal cell of endometrium	CL:0002255	57.96	gold quality
lower esophagus muscularis layer	UBERON:0035833	57.96	gold quality
lower esophagus	UBERON:0013473	57.89	gold quality
anterior cingulate cortex	UBERON:0009835	57.78	gold quality
superior frontal gyrus	UBERON:0002661	57.75	gold quality
right hemisphere of cerebellum	UBERON:0014890	57.57	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	57.29	gold quality
skeletal muscle tissue	UBERON:0001134	57.26	gold quality
cerebellum	UBERON:0002037	57.26	gold quality
cerebral cortex	UBERON:0000956	57.14	gold quality
cerebellar cortex	UBERON:0002129	57.12	gold quality
cerebellar hemisphere	UBERON:0002245	57.11	gold quality
ganglionic eminence	UBERON:0004023	56.96	silver quality
Brodmann (1909) area 9	UBERON:0013540	56.87	gold quality
tonsil	UBERON:0002372	56.80	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	56.80	gold quality
putamen	UBERON:0001874	56.62	gold quality
granulocyte	CL:0000094	56.45	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.