HSH2D
gene geneOn this page
Also known as ALXHSH2FLJ14886
Summary
HSH2D (hematopoietic SH2 domain containing, HGNC:24920) is a protein-coding gene on chromosome 19p13.11, encoding Hematopoietic SH2 domain-containing protein (Q96JZ2). May be a modulator of the apoptotic response through its ability to affect mitochondrial stability.
T-cell activation requires 2 signals: recognition of antigen by the T-cell receptor (see TCR; MIM 186880) and a costimulatory signal provided primarily by CD28 (MIM 186760) in naive T cells. HSH2 is a target of both of these signaling pathways (Greene et al., 2003 [PubMed 12960172]).
Source: NCBI Gene 84941 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 40 total
- MANE Select transcript:
NM_001382417
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:24920 |
| Approved symbol | HSH2D |
| Name | hematopoietic SH2 domain containing |
| Location | 19p13.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ALX, HSH2, FLJ14886 |
| Ensembl gene | ENSG00000196684 |
| Ensembl biotype | protein_coding |
| OMIM | 608349 |
| Entrez | 84941 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 5 protein_coding, 4 nonsense_mediated_decay, 1 retained_intron
ENST00000535834, ENST00000586872, ENST00000591154, ENST00000593031, ENST00000613195, ENST00000613986, ENST00000616070, ENST00000616645, ENST00000874628, ENST00000912672
RefSeq mRNA: 6 — MANE Select: NM_001382417
NM_001352265, NM_001352266, NM_001369808, NM_001369809, NM_001382417, NM_032855
CCDS: CCDS74304
Canonical transcript exons
ENST00000613986 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002892503 | 16143685 | 16143774 |
| ENSE00003473849 | 16153043 | 16153208 |
| ENSE00003475979 | 16154399 | 16154491 |
| ENSE00003476265 | 16148724 | 16148875 |
| ENSE00003575154 | 16152552 | 16152641 |
| ENSE00003711661 | 16157210 | 16158575 |
Expression profiles
Bgee: expression breadth ubiquitous, 164 present calls, max score 97.87.
FANTOM5 (CAGE): breadth broad, TPM avg 10.8697 / max 705.8619, expressed in 564 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 174388 | 10.8697 | 564 |
Top tissues by expression
240 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| granulocyte | CL:0000094 | 97.87 | gold quality |
| bone marrow cell | CL:0002092 | 94.89 | gold quality |
| leukocyte | CL:0000738 | 93.42 | gold quality |
| monocyte | CL:0000576 | 93.36 | gold quality |
| vermiform appendix | UBERON:0001154 | 92.82 | gold quality |
| spleen | UBERON:0002106 | 92.74 | gold quality |
| blood | UBERON:0000178 | 92.14 | gold quality |
| lymph node | UBERON:0000029 | 89.62 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 86.69 | gold quality |
| rectum | UBERON:0001052 | 86.19 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 86.13 | gold quality |
| caecum | UBERON:0001153 | 84.23 | gold quality |
| bone marrow | UBERON:0002371 | 83.43 | gold quality |
| small intestine | UBERON:0002108 | 83.05 | gold quality |
| gall bladder | UBERON:0002110 | 80.75 | gold quality |
| transverse colon | UBERON:0001157 | 79.83 | gold quality |
| minor salivary gland | UBERON:0001830 | 78.14 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 77.81 | gold quality |
| right uterine tube | UBERON:0001302 | 77.59 | gold quality |
| tonsil | UBERON:0002372 | 77.48 | gold quality |
| body of stomach | UBERON:0001161 | 77.09 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 76.84 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 76.51 | gold quality |
| upper lobe of lung | UBERON:0008948 | 75.94 | gold quality |
| body of pancreas | UBERON:0001150 | 75.59 | gold quality |
| mouth mucosa | UBERON:0003729 | 74.75 | gold quality |
| stomach | UBERON:0000945 | 74.46 | gold quality |
| right lung | UBERON:0002167 | 74.01 | gold quality |
| colonic epithelium | UBERON:0000397 | 73.93 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 73.69 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9067 | yes | 326.74 |
| E-HCAD-6 | yes | 140.53 |
| E-MTAB-8410 | yes | 25.51 |
| E-ANND-3 | yes | 24.41 |
| E-HCAD-11 | yes | 18.34 |
| E-CURD-112 | yes | 11.80 |
| E-MTAB-10553 | yes | 8.22 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
16 targeting HSH2D, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-3151-5P | 99.86 | 63.83 | 1069 |
| HSA-MIR-4502 | 99.65 | 66.99 | 1021 |
| HSA-MIR-5683 | 99.36 | 68.59 | 2083 |
| HSA-MIR-7151-3P | 99.04 | 69.72 | 2370 |
| HSA-MIR-1227-5P | 98.65 | 65.32 | 1549 |
| HSA-MIR-676-5P | 98.49 | 68.87 | 1492 |
| HSA-MIR-6784-3P | 98.39 | 64.88 | 662 |
| HSA-MIR-5691 | 98.23 | 67.02 | 1335 |
| HSA-MIR-6805-3P | 98.23 | 67.02 | 1334 |
| HSA-MIR-6862-3P | 97.92 | 64.86 | 531 |
| HSA-MIR-1288-3P | 96.86 | 66.95 | 536 |
| HSA-MIR-10392-3P | 88.79 | 61.83 | 122 |
Literature-anchored findings (GeneRIF, showing 10)
- involved in tyrosine kinase signaling in hematopoietic cells (PMID:11700021)
- ALX is an adaptor involved in T cell activation and interleukin-2 (IL-2) promoter activation (PMID:12960172)
- the ALX SH2 domain plays a critical role in ALX function downstream of CD28 (PMID:15284240)
- ALX exerts its effect on IL-2 up-regulation in the cytoplasm and responds to TCR and CD28 signaling (PMID:16169852)
- results indicate that RvD1 specifically interacts with both ALX and GPR32 on phagocytes. (PMID:20080636)
- although ALX is inducibly phosphorylated upon TCR/CD28 stimulation, this phosphorylation is not required for ALX to inhibit T cell activation. (PMID:20471366)
- LXA decreased IgM and IgG production on activated human B cells through ALX/FPR2-dependent signaling. (PMID:24166736)
- pro-inflammatory stimuli lead to FPR2/ALX expression while LXA4 induces an anti-inflammatory response (PMID:26248046)
- Both ALX and ChemR23 were present in human synovium and medial tibial plateau bone obtained following total knee replacement surgery for osteoarthritis. (PMID:27860453)
- HSH2D contributes to methotrexate resistance in human Tcell acute lymphoblastic leukaemia. (PMID:33000278)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | zgc:92242 | ENSDARG00000029443 |
| danio_rerio | hsh2d | ENSDARG00000042908 |
| mus_musculus | Hsh2d | ENSMUSG00000062007 |
| rattus_norvegicus | Hsh2d | ENSRNOG00000023614 |
| caenorhabditis_elegans | WBGENE00008733 |
Paralogs (4): SH2D2A (ENSG00000027869), SH2D4A (ENSG00000104611), SH2D4B (ENSG00000178217), SH2D7 (ENSG00000183476)
Protein
Protein identifiers
Hematopoietic SH2 domain-containing protein — Q96JZ2 (reviewed: Q96JZ2)
Alternative names: Adaptor in lymphocytes of unknown function X
All UniProt accessions (6): A0A087WT88, A0A087X0V9, Q96JZ2, K7EP18, K7ER77, K7ES08
UniProt curated annotations — full annotation on UniProt →
Function. May be a modulator of the apoptotic response through its ability to affect mitochondrial stability. Adapter protein involved in tyrosine kinase and CD28 signaling. Seems to affect CD28-mediated activation of the RE/AP element of the interleukin-2 promoter.
Subunit / interactions. Interacts with FES and TNK2.
Subcellular location. Cytoplasm. Nucleus.
Tissue specificity. Predominantly expressed in spleen and hematopoietic cells such as peripheral blood leukocytes and weakly expressed in prostate, thymus, heart, small intestine and placenta.
Post-translational modifications. May be phosphorylated by FES and ACK1.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96JZ2-1 | 1 | yes |
| Q96JZ2-2 | 2 |
RefSeq proteins (6): NP_001339194, NP_001339195, NP_001356737, NP_001356738, NP_001369346, NP_116244 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000980 | SH2 | Domain |
| IPR035047 | HSH2D_SH2 | Domain |
| IPR036860 | SH2_dom_sf | Homologous_superfamily |
Pfam: PF00017
UniProt features (25 total): mutagenesis site 7, strand 7, compositionally biased region 3, helix 2, region of interest 2, chain 1, domain 1, sequence conflict 1, splice variant 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2CS0 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96JZ2-F1 | 62.94 | 0.19 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Mutagenesis-validated functional residues (7):
| Position | Phenotype |
|---|---|
| 116 | no change in the ability to inhibit re/ap up-regulation in response to tcr/cd28 stimulation. |
| 135 | no change in the ability to inhibit re/ap up-regulation in response to tcr/cd28 stimulation. |
| 192–195 | no change in the ability to inhibit re/ap up-regulation in response to tcr/cd28 stimulation. |
| 341 | no change in the ability to inhibit re/ap up-regulation in response to tcr/cd28 stimulation. |
| 346–349 | no change in the ability to inhibit re/ap up-regulation in response to tcr/cd28 stimulation. |
| 10–13 | no change in the ability to inhibit re/ap up-regulation in response to tcr/cd28 stimulation. |
| 59 | loss of the ability to inhibit re/ap up-regulation in response to tcr/cd28 stimulation. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 148 (showing top):
GOBP_MEMBRANE_DEPOLARIZATION, GOBP_REGULATION_OF_LEUKOCYTE_APOPTOTIC_PROCESS, GOZGIT_ESR1_TARGETS_DN, GOBP_REGULATION_OF_LYMPHOCYTE_APOPTOTIC_PROCESS, GOBP_REGULATION_OF_MEMBRANE_DEPOLARIZATION, CAGCTG_AP4_Q5, GOBP_NEGATIVE_REGULATION_OF_LEUKOCYTE_APOPTOTIC_PROCESS, GOBP_REGULATION_OF_B_CELL_APOPTOTIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_LYMPHOCYTE_APOPTOTIC_PROCESS, GOBP_LEUKOCYTE_APOPTOTIC_PROCESS, BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_UP, GOBP_REGULATION_OF_MITOCHONDRIAL_MEMBRANE_POTENTIAL, JAATINEN_HEMATOPOIETIC_STEM_CELL_UP, GOBP_LYMPHOCYTE_APOPTOTIC_PROCESS, YNGTTNNNATT_UNKNOWN
GO Biological Process (4): negative regulation of B cell apoptotic process (GO:0002903), signal transduction (GO:0007165), T cell activation (GO:0042110), negative regulation of mitochondrial depolarization (GO:0051902)
GO Molecular Function (2): protein-macromolecule adaptor activity (GO:0030674), protein binding (GO:0005515)
GO Cellular Component (4): nucleus (GO:0005634), cytoplasm (GO:0005737), mitochondrion (GO:0005739), cytosol (GO:0005829)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| intracellular membrane-bounded organelle | 2 |
| cellular anatomical structure | 2 |
| cytoplasm | 2 |
| B cell apoptotic process | 1 |
| regulation of B cell apoptotic process | 1 |
| negative regulation of lymphocyte apoptotic process | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| lymphocyte activation | 1 |
| mitochondrial depolarization | 1 |
| regulation of mitochondrial depolarization | 1 |
| negative regulation of membrane depolarization | 1 |
| protein binding | 1 |
| molecular adaptor activity | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
888 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| HSH2D | FPR2 | P25090 | 845 |
| HSH2D | ANXA1 | P04083 | 837 |
| HSH2D | GPR32 | O75388 | 822 |
| HSH2D | TNK2 | Q07912 | 768 |
| HSH2D | CMKLR1 | Q99788 | 745 |
| HSH2D | LTB4R | Q15722 | 726 |
| HSH2D | ALB | P02768 | 571 |
| HSH2D | CD28 | P10747 | 536 |
| HSH2D | GPR18 | Q14330 | 528 |
| HSH2D | A0A087WTN9 | A0A087WTN9 | 501 |
| HSH2D | CDC42 | P21181 | 473 |
| HSH2D | VWF | P04275 | 471 |
| HSH2D | IL6R | P08887 | 471 |
| HSH2D | CD4 | P01730 | 467 |
| HSH2D | KANSL3 | Q9P2N6 | 464 |
IntAct
34 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HSH2D | TSG101 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HSH2D | LDHAL6B | psi-mi:“MI:0915”(physical association) | 0.490 |
| HSH2D | PINK1 | psi-mi:“MI:0915”(physical association) | 0.490 |
| HSH2D | RBP7 | psi-mi:“MI:0915”(physical association) | 0.490 |
| CRK | HSH2D | psi-mi:“MI:0915”(physical association) | 0.490 |
| HSH2D | TSC1 | psi-mi:“MI:0915”(physical association) | 0.490 |
| HSH2D | PIK3R3 | psi-mi:“MI:0915”(physical association) | 0.490 |
| HSH2D | CNMD | psi-mi:“MI:0915”(physical association) | 0.490 |
| HSH2D | psi-mi:“MI:0915”(physical association) | 0.490 | |
| RBP7 | HSH2D | psi-mi:“MI:0915”(physical association) | 0.490 |
| HSH2D | CRK | psi-mi:“MI:0915”(physical association) | 0.490 |
| TSC1 | HSH2D | psi-mi:“MI:0915”(physical association) | 0.490 |
| PIK3R3 | HSH2D | psi-mi:“MI:0915”(physical association) | 0.490 |
| HSH2D | psi-mi:“MI:0915”(physical association) | 0.490 | |
| HSH2D | AR | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| HSH2D | GAB1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| HSH2D | KIT | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| HSH2D | MET | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| HSH2D | NSA2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| OLIG1 | HSH2D | psi-mi:“MI:0915”(physical association) | 0.370 |
| TNK2 | HSH2D | psi-mi:“MI:0915”(physical association) | 0.370 |
| HSH2D | MPP3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| HSH2D | ALK | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (30): HSH2D (Two-hybrid), LDHAL6B (Two-hybrid), PPAPDC2 (Two-hybrid), RBP7 (Two-hybrid), LECT1 (Two-hybrid), PIK3R3 (Two-hybrid), PINK1 (Two-hybrid), TSC1 (Two-hybrid), OLIG1 (Two-hybrid), TNK2 (Two-hybrid), FES (Two-hybrid), NSA2 (Affinity Capture-MS), HSH2D (Affinity Capture-MS), HSH2D (Two-hybrid), HSH2D (Reconstituted Complex)
ESM2 similar proteins: A1L3T7, A2CI98, A2CJ06, A2VCK2, D3ZQL6, E1BBG2, M3WHG5, O15037, O43918, O70303, O75333, P48778, P59729, Q32PJ7, Q3KP66, Q3T191, Q5JYT7, Q5T124, Q5U4F0, Q5XIS1, Q6AXX1, Q6VYH9, Q7TSI1, Q80U38, Q8BGT6, Q8BHW9, Q8BWG4, Q8BWQ5, Q8BZ33, Q8BZW2, Q8C0J6, Q8C2K5, Q8CFK6, Q8IV53, Q8IY33, Q8IZW8, Q8K1S6, Q8K330, Q8N3F8, Q8TB24
Diamond homologs: A6NKC9, A6X942, G5ECJ6, O08908, O88834, P03949, P46109, P47941, Q00655, Q08012, Q08CX2, Q56A36, Q5SQS7, Q5U2U2, Q6AYC8, Q6VYH9, Q6YKA8, Q8BI17, Q8UUU2, Q96JZ2, Q9D7V1, Q9H788, Q9NP31, Q9QXK9, P00519, P00520, P00521, P10447, P20936, P29353, P32577, P41239, P41240, P41241, P42684, P50904, P98083, Q03160, Q0IIE2, Q0VBZ0
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 19 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Constitutive Signaling by Aberrant PI3K in Cancer | 5 | 48.8× | 7e-06 |
| PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling | 5 | 37.2× | 9e-06 |
| PIP3 activates AKT signaling | 5 | 25.7× | 3e-05 |
| Signaling by Receptor Tyrosine Kinases | 5 | 19.9× | 1e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
40 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 34 |
| Likely benign | 0 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1463 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:16143626:CCCCA:C | acceptor_loss | 1.0000 |
| 19:16143627:CCCAG:C | acceptor_loss | 1.0000 |
| 19:16143630:AG:A | acceptor_gain | 1.0000 |
| 19:16143631:G:T | acceptor_loss | 1.0000 |
| 19:16143631:GG:G | acceptor_gain | 1.0000 |
| 19:16148872:GAGA:G | donor_gain | 1.0000 |
| 19:16148874:GA:G | donor_gain | 1.0000 |
| 19:16148876:G:GG | donor_gain | 1.0000 |
| 19:16152550:AGG:A | acceptor_gain | 1.0000 |
| 19:16152551:GGG:G | acceptor_gain | 1.0000 |
| 19:16152642:G:GG | donor_gain | 1.0000 |
| 19:16153181:G:GT | donor_gain | 1.0000 |
| 19:16154397:A:AG | acceptor_gain | 1.0000 |
| 19:16154397:AGAAG:A | acceptor_gain | 1.0000 |
| 19:16154398:G:GG | acceptor_gain | 1.0000 |
| 19:16154398:GAAGG:G | acceptor_gain | 1.0000 |
| 19:16154488:GGAG:G | donor_gain | 1.0000 |
| 19:16154489:G:GT | donor_gain | 1.0000 |
| 19:16154489:GAG:G | donor_gain | 1.0000 |
| 19:16154489:GAGGT:G | donor_loss | 1.0000 |
| 19:16154492:G:GC | donor_loss | 1.0000 |
| 19:16154492:G:GG | donor_gain | 1.0000 |
| 19:16154493:T:A | donor_loss | 1.0000 |
| 19:16143630:A:AG | acceptor_gain | 0.9900 |
| 19:16143630:AGG:A | acceptor_gain | 0.9900 |
| 19:16143631:G:GA | acceptor_gain | 0.9900 |
| 19:16143631:GGG:G | acceptor_gain | 0.9900 |
| 19:16143631:GGGCT:G | acceptor_gain | 0.9900 |
| 19:16143775:GT:G | donor_loss | 0.9900 |
| 19:16143776:T:G | donor_loss | 0.9900 |
AlphaMissense
2288 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:16152592:T:C | F56L | 0.996 |
| 19:16152594:T:A | F56L | 0.996 |
| 19:16152594:T:G | F56L | 0.996 |
| 19:16148850:T:A | W34R | 0.993 |
| 19:16148850:T:C | W34R | 0.993 |
| 19:16152607:A:C | S61R | 0.992 |
| 19:16152609:T:A | S61R | 0.992 |
| 19:16152609:T:G | S61R | 0.992 |
| 19:16152556:G:C | A44P | 0.990 |
| 19:16157774:T:C | F347L | 0.989 |
| 19:16157776:T:A | F347L | 0.989 |
| 19:16157776:T:G | F347L | 0.989 |
| 19:16148854:T:C | F35S | 0.985 |
| 19:16152603:G:C | R59S | 0.985 |
| 19:16152603:G:T | R59S | 0.985 |
| 19:16148853:T:C | F35L | 0.984 |
| 19:16148855:C:A | F35L | 0.984 |
| 19:16148855:C:G | F35L | 0.984 |
| 19:16152593:T:C | F56S | 0.984 |
| 19:16152602:G:T | R59M | 0.984 |
| 19:16148802:T:C | F18L | 0.981 |
| 19:16148804:T:A | F18L | 0.981 |
| 19:16148804:T:G | F18L | 0.981 |
| 19:16153064:T:A | H79Q | 0.980 |
| 19:16153064:T:G | H79Q | 0.980 |
| 19:16152625:T:G | Y67D | 0.979 |
| 19:16153144:T:A | V106D | 0.979 |
| 19:16148852:G:C | W34C | 0.978 |
| 19:16148852:G:T | W34C | 0.978 |
| 19:16152602:G:C | R59T | 0.978 |
dbSNP variants (sampled 300 via entrez): RS1000042614 (19:16136411 C>A,T), RS1000476877 (19:16135448 T>C), RS1000521792 (19:16146470 G>A), RS1000581144 (19:16142606 G>C), RS1000674344 (19:16158154 C>A), RS1000749660 (19:16156933 C>A), RS1000759008 (19:16137187 C>T), RS1001212577 (19:16136919 T>C), RS1001275524 (19:16158242 C>G,T), RS1001490429 (19:16140384 C>A), RS1001586315 (19:16146341 G>A), RS1001638712 (19:16146041 A>G), RS1001663927 (19:16134849 G>C), RS1001752474 (19:16151975 C>T), RS1001824029 (19:16140584 G>A)
Disease associations
OMIM: gene MIM:608349 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST90002390_532 | Mean corpuscular hemoglobin | 1.000000e-28 |
| GCST90002392_71 | Mean corpuscular volume | 7.000000e-22 |
| GCST90002397_192 | Mean spheric corpuscular volume | 2.000000e-09 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004527 | mean corpuscular hemoglobin |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| (+)-JQ1 compound | decreases expression | 2 |
| Benzo(a)pyrene | affects methylation | 2 |
| Estradiol | affects cotreatment, decreases expression | 2 |
| Nickel | increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression, affects expression | 2 |
| aristolochic acid I | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| ethyl-p-hydroxybenzoate | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| pinostrobin | increases expression | 1 |
| abrine | decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Cadmium | decreases expression | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Drugs, Chinese Herbal | increases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Methotrexate | increases expression | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Naphthoquinones | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Testosterone | affects cotreatment, increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Aflatoxin B1 | decreases expression | 1 |
| Cadmium Chloride | decreases expression | 1 |
| Particulate Matter | increases abundance, increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.