HSPB1
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Also known as HSP27HSP28Hs.76067Hsp25CMT2F
Summary
HSPB1 (heat shock protein family B (small) member 1, HGNC:5246) is a protein-coding gene on chromosome 7q11.23, encoding Heat shock protein beta-1 (P04792). Small heat shock protein which functions as a molecular chaperone probably maintaining denatured proteins in a folding-competent state. In precision oncology, HSPB1 EXPRESSION confers sensitivity to Gemcitabine in Pancreatic Ductal Adenocarcinoma (CIViC Level D).
This gene encodes a member of the small heat shock protein (HSP20) family of proteins. In response to environmental stress, the encoded protein translocates from the cytoplasm to the nucleus and functions as a molecular chaperone that promotes the correct folding of other proteins. This protein plays an important role in the differentiation of a wide variety of cell types. Expression of this gene is correlated with poor clinical outcome in multiple human cancers, and the encoded protein may promote cancer cell proliferation and metastasis, while protecting cancer cells from apoptosis. Mutations in this gene have been identified in human patients with Charcot-Marie-Tooth disease and distal hereditary motor neuropathy.
Source: NCBI Gene 3315 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Charcot-Marie-Tooth disease axonal type 2F (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 3
- Clinical variants (ClinVar): 431 total — 17 pathogenic, 11 likely-pathogenic
- Phenotypes (HPO): 36
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Precision-oncology evidence (CIViC): 1 curated variant–drug association
- MANE Select transcript:
NM_001540
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:5246 |
| Approved symbol | HSPB1 |
| Name | heat shock protein family B (small) member 1 |
| Location | 7q11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HSP27, HSP28, Hs.76067, Hsp25, CMT2F |
| Ensembl gene | ENSG00000106211 |
| Ensembl biotype | protein_coding |
| OMIM | 602195 |
| Entrez | 3315 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 10 protein_coding, 6 protein_coding_CDS_not_defined, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000248553, ENST00000429938, ENST00000447574, ENST00000674547, ENST00000674560, ENST00000674638, ENST00000674650, ENST00000674965, ENST00000675134, ENST00000675226, ENST00000675417, ENST00000675488, ENST00000675538, ENST00000675624, ENST00000675733, ENST00000675906, ENST00000676195, ENST00000676231, ENST00000676398
RefSeq mRNA: 1 — MANE Select: NM_001540
NM_001540
CCDS: CCDS5583
Canonical transcript exons
ENST00000248553 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000876954 | 76302673 | 76303076 |
| ENSE00003510935 | 76303802 | 76303865 |
| ENSE00003584076 | 76303984 | 76304292 |
Expression profiles
Bgee: expression breadth ubiquitous, 299 present calls, max score 99.96.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 1891.4412 / max 24538.0386, expressed in 1819 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 79157 | 1773.2789 | 1803 |
| 79163 | 54.6577 | 1780 |
| 79161 | 40.5401 | 1797 |
| 79164 | 8.4236 | 1359 |
| 79158 | 7.7391 | 1574 |
| 79160 | 2.3860 | 874 |
| 79159 | 2.2670 | 948 |
| 79162 | 1.4006 | 763 |
| 79165 | 0.7480 | 353 |
Top tissues by expression
300 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 99.96 | gold quality |
| ascending aorta | UBERON:0001496 | 99.94 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.94 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 99.92 | gold quality |
| aorta | UBERON:0000947 | 99.92 | gold quality |
| right coronary artery | UBERON:0001625 | 99.92 | gold quality |
| gingiva | UBERON:0001828 | 99.92 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.92 | gold quality |
| gingival epithelium | UBERON:0001949 | 99.91 | gold quality |
| popliteal artery | UBERON:0002250 | 99.91 | gold quality |
| esophagus mucosa | UBERON:0002469 | 99.91 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 99.91 | gold quality |
| tibial artery | UBERON:0007610 | 99.91 | gold quality |
| vagina | UBERON:0000996 | 99.89 | gold quality |
| esophagus | UBERON:0001043 | 99.89 | gold quality |
| coronary artery | UBERON:0001621 | 99.89 | gold quality |
| left coronary artery | UBERON:0001626 | 99.89 | gold quality |
| mammalian vulva | UBERON:0000997 | 99.88 | gold quality |
| apex of heart | UBERON:0002098 | 99.88 | gold quality |
| decidua | UBERON:0002450 | 99.88 | gold quality |
| blood vessel layer | UBERON:0004797 | 99.88 | gold quality |
| lower esophagus | UBERON:0013473 | 99.88 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 99.88 | gold quality |
| gluteal muscle | UBERON:0002000 | 99.87 | gold quality |
| saphenous vein | UBERON:0007318 | 99.86 | gold quality |
| oral cavity | UBERON:0000167 | 99.85 | gold quality |
| penis | UBERON:0000989 | 99.85 | gold quality |
| cardiac ventricle | UBERON:0002082 | 99.85 | gold quality |
| heart left ventricle | UBERON:0002084 | 99.85 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.85 | gold quality |
Single-cell (SCXA)
Detected in 47 experiment(s), a significant marker in 36.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-2 | yes | 10594.85 |
| E-MTAB-10885 | yes | 9746.66 |
| E-HCAD-1 | yes | 9558.15 |
| E-CURD-79 | yes | 8977.98 |
| E-MTAB-10287 | yes | 6553.79 |
| E-MTAB-8495 | yes | 6145.08 |
| E-MTAB-6653 | yes | 5445.59 |
| E-CURD-88 | yes | 5225.31 |
| E-CURD-95 | yes | 4691.55 |
| E-GEOD-124472 | yes | 4562.86 |
| E-HCAD-8 | yes | 4134.55 |
| E-MTAB-6701 | yes | 3858.98 |
| E-GEOD-124263 | yes | 3109.55 |
| E-MTAB-6108 | yes | 2492.14 |
| E-HCAD-23 | yes | 1864.44 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AHR, AR, ATF3, ATF5, CUX1, ESR1, GATA3, HSF1, HSF2, HSF4, JUN, NFKB2, PGS1, POU4F1, POU4F2, SP1, STAT1, STAT3, STAT5B, TCF23, TFCP2
miRNA regulators (miRDB)
6 targeting HSPB1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-3133 | 99.81 | 70.92 | 3506 |
| HSA-MIR-580-3P | 99.67 | 69.23 | 1841 |
| HSA-MIR-552-3P | 96.68 | 64.12 | 1026 |
| HSA-MIR-541-3P | 96.07 | 66.11 | 1271 |
| HSA-MIR-654-5P | 96.07 | 66.18 | 1280 |
Literature-anchored findings (GeneRIF, showing 40)
- ThioredoxinT, a thioredoxin with testis-specific expression, has a clear association with the Y chromosome lampbrush loops ks-1 and kl-5 in primary spermatocytes (PMID:14579129)
- Drosophila thioredoxin can function as an anti-aging agent and as a suppressor of Parkin-associated endothelin receptor-like receptor - and poly-glutamine-induced neurotoxicity (PMID:17301052)
- Phosphatase inhibitors prevent HSP27 dephosphorylation, destruction of stress fibrils, and morphological changes in endothelial cells during ATP depletion (PMID:11740592)
- Characterization of proteins associated with heat shock protein hsp27 in the squamous cell carcinoma cell line A431 (PMID:11779227)
- HSP27 expression is cell differentiation and oral squamous cell carcinoma (PMID:11836590)
- in asthmatic subjects the basal epithelium cells express a high level of Hsp27 but no apoptotic morphology. (PMID:12482203)
- Expression of heat-shock protein 25 in dental pulp and enamel organ during odontogenesis in the rat molar. Hsp 25 is related to the formation and maintenance of the ruffled border of ruffle-ended ameloblasts and enamel-free-area cells. (PMID:12489163)
- Has specific actions in renal epithelia subjected to energy depletion, including interacting with actin to preserve architecture in specific intracellular domains. (PMID:12506142)
- Hsp27 has a role in regulating apoptosis through control of Akt activity (PMID:12740362)
- Maps to chromosome 7q11.23. Deletion may be resonsible for cognitive features of Williams syndrome. (PMID:12838549)
- Hsp27 is overexpressed in both dexamethasone resistant multiple myeloma cell lines and primary patient cells. (PMID:12855565)
- HSP27-dependent thermotolerance is suppressed by mumps virus infection through the destruction of STAT-1. (PMID:12917439)
- Taken together, our findings demonstrate that constitutively activated Stat3 up-regulates HSP27 and may facilitate phosphorylation of HSP27 at serine residue 78. (PMID:14715258)
- HSP27 expression was reduced in metaplasia and then significantly increased with neoplastic progresssion in Barrett esophagus. Gender-related differences were obnserved and HSP27 expression was higher in poorly-differentiated adenocarcinoma. (PMID:15013707)
- missense mutation in the gene encoding 27-kDa small heat-shock protein B1 (HSPB1, also called HSP27) that segregates in a family with Charcot-Marie-Tooth disease (PMID:15122254)
- HSP27 is involved in the UVC-resistance of human cells, at least those tested, possibly via functioning in nucleotide excision repair. (PMID:15265704)
- Hsp27 expression and cell survival are regulated by the POU transcription factor Brn3a (PMID:15272315)
- Results showed significant increases in expression and in HSP27 isoform numbers in renal cell carcinoma compared to normal kidney. (PMID:15274119)
- definition of the binding-competent oligomeric state of human Hsp27 (PMID:15542604)
- wild-type protein forms smaller oligomers than previously believed, define the roles played by various structural domains in Hsp27 oligomerization (PMID:15581903)
- Hsp27 protects against cytotoxic effects induced by oxidative stress in cultured mammalian cells (PMID:15649839)
- HSP27, an ERbeta-associated protein, shows attenuated expression with coronary atherosclerosis and modulates estrogen signaling. (PMID:15662019)
- Ser(82) in the human heat shock protein Hsp27 is a novel substrate for PKD (PMID:15728188)
- MEK6E activates p38 and results in phosphorylation of its downstream substrate, heat shock protein 27 (PMID:15790570)
- HSP25 downregulates PKCdelta, which is a key molecule for radiation-induced ROS generation and mitochondrial-mediated caspase-dependent apoptotic events. (PMID:15806174)
- particularly in conditions of enhanced oxidative stress, lymphomonocytes from liver disease patients present an increased expression of HSP27 (PMID:15969449)
- Taken together, our results indicated that expanded ataxin-7 that leads to neurodegeneration significantly impaired the expression of Hsp27 and Hsp70 protein. (PMID:16039988)
- One Hsp27 missense mutation, C379T, was detected in 4 autosomal dominant families with CMT disease type 2, and haplotype analysis indicated that the 4 families probably had a common founder. (PMID:16087758)
- Our results suggest that forms of stress that upregulate HSP27 and its phosphorylation may be useful as novel approaches to prevent adverse ocular effects arising from UV exposure in humans. (PMID:16114012)
- increased level of Hsp27 may reflect a dynamic process of the survived cells to unfold and remove mutant ataxin-3 (PMID:16126176)
- The first report of HSP27 gene mutation in Chinese patients with Charcot-Marie-Tooth disease , but it may be not common(0.90%). The C379T mutation in HSP27 gene also causes CMT2 except for distal hereditary motor neuropathy. (PMID:16215937)
- A tumor marker for hepatocellular hepatoma. (PMID:16240287)
- Hsp27 is an active participant in the (de)phosphorylation cascade controlling the activity of the splicing regulator SRp38. (PMID:16339078)
- findings provide a model system for the study of metastatic potential of tumors and are suggestive of an earlier unrecognized role for Hsp25 in tumor migration (PMID:16340246)
- A mutation in the small heat-shock protein HSPB1 leading to distal hereditary motor neuronopathy disrupts neurofilament assembly and the axonal transport of specific cellular cargoes. (PMID:16368711)
- Up-regulation of Hsp27 protein is associated with hepatocellular carcinoma (PMID:16400691)
- Both MAPKAPK2 and HSP27 are necessary for TGFbeta-mediated increases in MMP-2 and cell invasion in human prostate cancer. (PMID:16407830)
- Hsp27 can exploit a large number of oligomerization states (PMID:16436384)
- Heat-shock protein 27 of endothelial cells is modified by methylglyoxal, which may contribute to changes in endothelial cell function associated to diabetes.. (PMID:16487519)
- Can be degraded by enzymes released from atherosclerotic plaques. May reflect proteolytic imbalance. Downregulation decreases vascular smooth muscle cell resistance to proteolytically-induced apoptosis. Might play role in prevention of plaque rupture. (PMID:16574891)
Cross-species orthologs
15 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | hspb1 | ENSDARG00000041065 |
| mus_musculus | Hspb1 | ENSMUSG00000004951 |
| rattus_norvegicus | Hspb1 | ENSRNOG00000023546 |
| drosophila_melanogaster | CG14207 | FBGN0031037 |
| caenorhabditis_elegans | WBGENE00002011 | |
| caenorhabditis_elegans | WBGENE00002015 | |
| caenorhabditis_elegans | WBGENE00002016 | |
| caenorhabditis_elegans | WBGENE00002017 | |
| caenorhabditis_elegans | WBGENE00002018 | |
| caenorhabditis_elegans | WBGENE00002019 | |
| caenorhabditis_elegans | WBGENE00002020 | |
| caenorhabditis_elegans | WBGENE00002023 | |
| caenorhabditis_elegans | WBGENE00008591 | |
| caenorhabditis_elegans | WBGENE00008592 | |
| caenorhabditis_elegans | hsp-12.1 | WBGENE00011906 |
Paralogs (8): HSPB6 (ENSG00000004776), CRYAB (ENSG00000109846), HSPB8 (ENSG00000152137), CRYAA (ENSG00000160202), HSPB3 (ENSG00000169271), HSPB2 (ENSG00000170276), HSPB7 (ENSG00000173641), HSPB9 (ENSG00000260325)
Protein
Protein identifiers
Heat shock protein beta-1 — P04792 (reviewed: P04792)
Alternative names: 28 kDa heat shock protein, Estrogen-regulated 24 kDa protein, Heat shock 27 kDa protein, Heat shock protein family B member 1, Stress-responsive protein 27
All UniProt accessions (11): P04792, A0A6Q8PF43, A0A6Q8PFE7, A0A6Q8PFK8, A0A6Q8PGK1, A0A6Q8PGY2, A0A6Q8PH65, A0A6Q8PHA6, A0A6Q8PHJ6, C9J3N8, V9HW43
UniProt curated annotations — full annotation on UniProt →
Function. Small heat shock protein which functions as a molecular chaperone probably maintaining denatured proteins in a folding-competent state. Plays a role in stress resistance and actin organization. Through its molecular chaperone activity may regulate numerous biological processes including the phosphorylation and the axonal transport of neurofilament proteins.
Subunit / interactions. Homooligomer. Homodimer; becomes monomeric upon activation. Heterooligomer; with HSPB6. Associates with alpha- and beta-tubulin. Interacts with TGFB1I1. Interacts with CRYAB. Interacts with HSPB8. Interacts with HSPBAP1.
Subcellular location. Cytoplasm. Nucleus. Cytoskeleton. Spindle.
Tissue specificity. Detected in all tissues tested: skeletal muscle, heart, aorta, large intestine, small intestine, stomach, esophagus, bladder, adrenal gland, thyroid, pancreas, testis, adipose tissue, kidney, liver, spleen, cerebral cortex, blood serum and cerebrospinal fluid. Highest levels are found in the heart and in tissues composed of striated and smooth muscle.
Post-translational modifications. Phosphorylated upon exposure to protein kinase C activators and heat shock. Phosphorylation by MAPKAPK2 and MAPKAPK3 in response to stress dissociates HSPB1 from large small heat-shock protein (sHsps) oligomers and impairs its chaperone activity and ability to protect against oxidative stress effectively. Phosphorylation by MAPKAPK5 in response to PKA stimulation induces F-actin rearrangement.
Disease relevance. Charcot-Marie-Tooth disease, axonal, type 2F (CMT2F) [MIM:606595] A dominant axonal form of Charcot-Marie-Tooth disease, a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. Charcot-Marie-Tooth disease is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies (designated CMT1 when they are dominantly inherited) and primary peripheral axonal neuropathies (CMT2). Neuropathies of the CMT2 group are characterized by signs of axonal degeneration in the absence of obvious myelin alterations, normal or slightly reduced nerve conduction velocities, and progressive distal muscle weakness and atrophy. Onset of Charcot-Marie-Tooth disease type 2F is between 15 and 25 years with muscle weakness and atrophy usually beginning in feet and legs (peroneal distribution). Upper limb involvement occurs later. The disease is caused by variants affecting the gene represented in this entry. Neuronopathy, distal hereditary motor, autosomal dominant 3 (HMND3) [MIM:608634] A form of distal hereditary motor neuronopathy, a heterogeneous group of neuromuscular disorders caused by selective degeneration of motor neurons in the anterior horn of the spinal cord, without sensory deficit in the posterior horn. The overall clinical picture consists of a classical distal muscular atrophy syndrome in the legs without clinical sensory loss. The disease starts with weakness and wasting of distal muscles of the anterior tibial and peroneal compartments of the legs. Later on, weakness and atrophy may expand to the proximal muscles of the lower limbs and/or to the distal upper limbs. The disease is caused by variants affecting the gene represented in this entry.
Induction. Up-regulated in response to environmental stresses such as heat shock. Up-regulated by estrogen stimulation. (Microbial infection) Up-regulated in response to enterovirus 71 (EV71) infection (at protein level).
Similarity. Belongs to the small heat shock protein (HSP20) family.
RefSeq proteins (1): NP_001531* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001436 | Alpha-crystallin/sHSP_animal | Family |
| IPR002068 | A-crystallin/Hsp20_dom | Domain |
| IPR008978 | HSP20-like_chaperone | Homologous_superfamily |
| IPR037876 | ACD_HspB1 | Domain |
Pfam: PF00011
UniProt features (56 total): sequence variant 23, modified residue 13, strand 7, sequence conflict 4, mutagenesis site 3, turn 2, chain 1, domain 1, region of interest 1, helix 1
Structure
Experimental structures (PDB)
6 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3Q9P | X-RAY DIFFRACTION | 2 |
| 6GJH | X-RAY DIFFRACTION | 2.1 |
| 3Q9Q | X-RAY DIFFRACTION | 2.2 |
| 4MJH | X-RAY DIFFRACTION | 2.6 |
| 6DV5 | X-RAY DIFFRACTION | 3.58 |
| 2N3J | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P04792-F1 | 68.82 | 0.32 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (13): 86, 98, 123, 174, 176, 199, 12, 15, 26, 65, 78, 82, 83
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 15 | mimicks phosphorylation state, leading to dreased ability to act as molecular chaperones; when associated with d-78 and |
| 78 | mimicks phosphorylation state, leading to dreased ability to act as molecular chaperones; when associated with d-15 and |
| 82 | mimicks phosphorylation state, leading to dreased ability to act as molecular chaperones; when associated with d-15 and |
Function
Pathways and Gene Ontology
Reactome pathways
8 pathways
| ID | Pathway |
|---|---|
| R-HSA-4420097 | VEGFA-VEGFR2 Pathway |
| R-HSA-450408 | AUF1 (hnRNP D0) binds and destabilizes mRNA |
| R-HSA-5687128 | MAPK6/MAPK4 signaling |
| R-HSA-9009391 | Extra-nuclear estrogen signaling |
| R-HSA-3371453 | Regulation of HSF1-mediated heat shock response |
| R-HSA-3371511 | HSF1 activation |
| R-HSA-3371568 | Attenuation phase |
| R-HSA-3371571 | HSF1-dependent transactivation |
MSigDB gene sets: 523 (showing top):
VERHAAK_AML_WITH_NPM1_MUTATED_DN, GOBP_DIGESTION, TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP, SHEPARD_BMYB_MORPHOLINO_UP, GOBP_REGULATION_OF_AUTOPHAGY, GOBP_AXO_DENDRITIC_TRANSPORT, YAGI_AML_WITH_INV_16_TRANSLOCATION, GOBP_POSITIVE_REGULATION_OF_ENDOTHELIAL_CELL_CHEMOTAXIS, GOBP_CELL_CHEMOTAXIS, GOBP_REGULATION_OF_PHOSPHORYLATION, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, PEREZ_TP63_TARGETS, ENK_UV_RESPONSE_KERATINOCYTE_UP, KEGG_MAPK_SIGNALING_PATHWAY, GOBP_PLATELET_ACTIVATION
GO Biological Process (24): regulation of protein phosphorylation (GO:0001932), regulation of translational initiation (GO:0006446), protein folding (GO:0006457), response to unfolded protein (GO:0006986), response to heat (GO:0009408), response to virus (GO:0009615), regulation of autophagy (GO:0010506), positive regulation of interleukin-1 beta production (GO:0032731), positive regulation of tumor necrosis factor production (GO:0032760), intracellular signal transduction (GO:0035556), cellular response to vascular endothelial growth factor stimulus (GO:0035924), protein refolding (GO:0042026), negative regulation of apoptotic process (GO:0043066), regulation of canonical NF-kappaB signal transduction (GO:0043122), positive regulation of blood vessel endothelial cell migration (GO:0043536), positive regulation of angiogenesis (GO:0045766), vascular endothelial growth factor receptor signaling pathway (GO:0048010), intestinal epithelial structure maintenance (GO:0060729), platelet aggregation (GO:0070527), negative regulation of protein kinase C signaling (GO:0090038), anterograde axonal protein transport (GO:0099641), negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway (GO:1902176), positive regulation of endothelial cell chemotaxis (GO:2001028), negative regulation of apoptotic signaling pathway (GO:2001234)
GO Molecular Function (11): RNA binding (GO:0003723), protein kinase C binding (GO:0005080), protein kinase C inhibitor activity (GO:0008426), protein kinase binding (GO:0019901), identical protein binding (GO:0042802), protein homodimerization activity (GO:0042803), ubiquitin binding (GO:0043130), protein folding chaperone (GO:0044183), obsolete unfolded protein binding (GO:0051082), RNA polymerase II-specific DNA-binding transcription factor binding (GO:0061629), protein binding (GO:0005515)
GO Cellular Component (14): proteasome complex (GO:0000502), cornified envelope (GO:0001533), obsolete extracellular space (GO:0005615), nucleus (GO:0005634), cytoplasm (GO:0005737), spindle (GO:0005819), cytosol (GO:0005829), cytoskeleton (GO:0005856), focal adhesion (GO:0005925), Z disc (GO:0030018), extracellular exosome (GO:0070062), axon cytoplasm (GO:1904115), plasma membrane (GO:0005886), contractile muscle fiber (GO:0043292)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Cellular response to heat stress | 3 |
| Signaling by VEGF | 1 |
| Regulation of mRNA stability by proteins that bind AU-rich elements | 1 |
| MAPK family signaling cascades | 1 |
| ESR-mediated signaling | 1 |
| HSF1-dependent transactivation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| intracellular membraneless organelle | 3 |
| intracellular anatomical structure | 2 |
| protein folding | 2 |
| cytoplasm | 2 |
| protein phosphorylation | 1 |
| regulation of protein modification process | 1 |
| regulation of phosphorylation | 1 |
| translational initiation | 1 |
| regulation of translation | 1 |
| cellular process | 1 |
| protein maturation | 1 |
| response to topologically incorrect protein | 1 |
| response to stress | 1 |
| response to temperature stimulus | 1 |
| response to other organism | 1 |
| autophagy | 1 |
| regulation of catabolic process | 1 |
| interleukin-1 beta production | 1 |
| regulation of interleukin-1 beta production | 1 |
| positive regulation of interleukin-1 production | 1 |
| tumor necrosis factor production | 1 |
| regulation of tumor necrosis factor production | 1 |
| positive regulation of tumor necrosis factor superfamily cytokine production | 1 |
| signal transduction | 1 |
| cellular response to growth factor stimulus | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| canonical NF-kappaB signal transduction | 1 |
| regulation of intracellular signal transduction | 1 |
| positive regulation of endothelial cell migration | 1 |
| blood vessel endothelial cell migration | 1 |
| regulation of blood vessel endothelial cell migration | 1 |
| angiogenesis | 1 |
| regulation of angiogenesis | 1 |
| positive regulation of vasculature development | 1 |
| cell surface receptor protein tyrosine kinase signaling pathway | 1 |
| maintenance of gastrointestinal epithelium | 1 |
| platelet activation | 1 |
Protein interactions and networks
STRING
3282 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| HSPB1 | CYCS | P00001 | 991 |
| HSPB1 | HSPA4 | P34932 | 989 |
| HSPB1 | AKT1 | P31749 | 964 |
| HSPB1 | PLEC | Q15149 | 963 |
| HSPB1 | EIF4G1 | Q04637 | 942 |
| HSPB1 | HSP90AB1 | P08238 | 929 |
| HSPB1 | HSP90AA1 | P07900 | 924 |
| HSPB1 | HSPA8 | P11142 | 923 |
| HSPB1 | MAPKAPK2 | P49137 | 915 |
| HSPB1 | HSPA1A | P08107 | 913 |
| HSPB1 | BAG3 | O95817 | 882 |
| HSPB1 | HSPBAP1 | Q96EW2 | 873 |
| HSPB1 | DNAJB1 | P25685 | 860 |
| HSPB1 | HSPH1 | Q92598 | 850 |
| HSPB1 | MAPKAPK5 | Q8IW41 | 841 |
IntAct
1237 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CRYAB | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.910 |
| HSPB1 | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.830 |
| HSPB1 | HSPB1 | psi-mi:“MI:0407”(direct interaction) | 0.830 |
| CRYAA | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.810 |
| JADE1 | KAT7 | psi-mi:“MI:0914”(association) | 0.720 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| RPSA | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| SH3KBP1 | USP27X | psi-mi:“MI:0914”(association) | 0.640 |
| MAPK7 | PFDN6 | psi-mi:“MI:0914”(association) | 0.640 |
| RAF1 | CALU | psi-mi:“MI:0914”(association) | 0.640 |
| DAXX | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.620 |
| HSPB1 | DAXX | psi-mi:“MI:0915”(physical association) | 0.620 |
| ANXA8 | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ANXA5 | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| AQP8 | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRIM23 | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ATP6V1B1 | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HSPB1 | BAK1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TEN1 | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (972): HSPB1 (Two-hybrid), HSPB1 (Affinity Capture-Western), HSPB1 (Reconstituted Complex), AKT1 (Reconstituted Complex), HSPB1 (Biochemical Activity), HSPB1 (Affinity Capture-MS), HSPB1 (Affinity Capture-MS), HSPB1 (Affinity Capture-MS), HSPB1 (Affinity Capture-MS), HSPB1 (Affinity Capture-MS), HSPB1 (Affinity Capture-MS), HSPB1 (Affinity Capture-MS), HSPB1 (Affinity Capture-MS), HSPB1 (Affinity Capture-MS), HSPB1 (Affinity Capture-MS)
ESM2 similar proteins: A5JV83, O93591, P02487, P02497, P02500, P02506, P02507, P02508, P02509, P02510, P02511, P02512, P04792, P05811, P06904, P09887, P14602, P15990, P15991, P23927, P23928, P24622, P24623, P30218, P30219, P35385, P41316, P42929, P42930, P42931, Q00649, Q05557, Q05713, Q3T149, Q5EAC9, Q5ENY9, Q5R9K0, Q5RAB0, Q5S1U1, Q60HG8
Diamond homologs: A5JV83, O14558, P02487, P02488, P02489, P02507, P02510, P02511, P02512, P04120, P04792, P05811, P06581, P06582, P14602, P15991, P23927, P23928, P30218, P30219, P34696, P35385, P41316, P42929, P42930, P42931, P82147, P97541, Q00649, Q04757, Q05557, Q05713, Q148F8, Q1RI96, Q3T149, Q5EAC9, Q5ENY9, Q5R9K0, Q5RAB0, Q5S1U1
SIGNOR signaling
26 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| HSPB1 | down-regulates | DIABLO | |
| MAPKAPK2 | down-regulates | HSPB1 | phosphorylation |
| AKT | down-regulates | HSPB1 | phosphorylation |
| AKT2 | down-regulates | HSPB1 | phosphorylation |
| AKT3 | down-regulates | HSPB1 | phosphorylation |
| PRKG1 | down-regulates | HSPB1 | phosphorylation |
| PRKG2 | down-regulates | HSPB1 | phosphorylation |
| RPS6KB1 | down-regulates | HSPB1 | phosphorylation |
| HSPB1 | “up-regulates quantity by stabilization” | GCH1 | binding |
| AKT1 | down-regulates | HSPB1 | phosphorylation |
| PRKCD | “down-regulates activity” | HSPB1 | phosphorylation |
| HSPB1 | down-regulates | CASP3 | |
| MAPKAPK3 | unknown | HSPB1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 202 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Signaling by CSF3 (G-CSF) | 6 | 21.8× | 1e-05 |
| Negative regulation of MAPK pathway | 9 | 15.2× | 1e-06 |
| SHC1 events in ERBB2 signaling | 5 | 15.2× | 3e-04 |
| RAF activation | 7 | 15.0× | 2e-05 |
| Signaling by SCF-KIT | 9 | 14.2× | 1e-06 |
| Signaling by high-kinase activity BRAF mutants | 7 | 14.1× | 2e-05 |
| Signaling by RAS mutants | 5 | 13.5× | 6e-04 |
| VEGFR2 mediated vascular permeability | 5 | 13.0× | 6e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| positive regulation of peptidyl-serine phosphorylation | 6 | 25.4× | 2e-05 |
| insulin-like growth factor receptor signaling pathway | 8 | 21.9× | 8e-07 |
| Fc-gamma receptor signaling pathway involved in phagocytosis | 5 | 19.4× | 8e-04 |
| response to interleukin-1 | 5 | 14.1× | 2e-03 |
| response to hydrogen peroxide | 5 | 12.9× | 3e-03 |
| positive regulation of substrate adhesion-dependent cell spreading | 6 | 12.4× | 1e-03 |
| response to heat | 5 | 11.6× | 4e-03 |
| negative regulation of extrinsic apoptotic signaling pathway in absence of ligand | 5 | 11.3× | 5e-03 |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
431 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 17 |
| Likely pathogenic | 11 |
| Uncertain significance | 226 |
| Likely benign | 100 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (28)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1455479 | NC_000007.13:g.(?75933099)(75933490_?)del | Pathogenic |
| 1930599 | NM_001540.5(HSPB1):c.245_246insT (p.Ser83fs) | Pathogenic |
| 2035012 | NM_001540.5(HSPB1):c.472del (p.Ser158fs) | Pathogenic |
| 410713 | NM_001540.5(HSPB1):c.522_523delinsCT (p.Gln175Ter) | Pathogenic |
| 533813 | NM_001540.5(HSPB1):c.404C>A (p.Ser135Tyr) | Pathogenic |
| 533814 | NM_001540.5(HSPB1):c.116C>T (p.Pro39Leu) | Pathogenic |
| 584236 | NC_000007.14:g.(?76303802)(76304173_?)del | Pathogenic |
| 637505 | NM_001540.5(HSPB1):c.171_172insGCGCCCT (p.Leu58fs) | Pathogenic |
| 7478 | NM_001540.5(HSPB1):c.404C>T (p.Ser135Phe) | Pathogenic |
| 7479 | NM_001540.5(HSPB1):c.379C>T (p.Arg127Trp) | Pathogenic |
| 7481 | NM_001540.5(HSPB1):c.545C>T (p.Pro182Leu) | Pathogenic |
| 7482 | NM_001540.5(HSPB1):c.406C>T (p.Arg136Trp) | Pathogenic |
| 7484 | NM_001540.5(HSPB1):c.418C>G (p.Arg140Gly) | Pathogenic |
| 7485 | NM_001540.5(HSPB1):c.295C>A (p.Leu99Met) | Pathogenic |
| 831819 | NC_000007.14:g.(?76303789)(76304183_?)del | Pathogenic |
| 946496 | NM_001540.5(HSPB1):c.544C>G (p.Pro182Ala) | Pathogenic |
| 986844 | NM_001540.5(HSPB1):c.126G>A (p.Trp42Ter) | Pathogenic |
| 2440796 | NM_001540.5(HSPB1):c.504dup (p.Met169fs) | Likely pathogenic |
| 2497721 | NM_001540.5(HSPB1):c.433C>T (p.Pro145Ser) | Likely pathogenic |
| 2884503 | NM_001540.5(HSPB1):c.116C>G (p.Pro39Arg) | Likely pathogenic |
| 3026735 | NM_001540.5(HSPB1):c.504del (p.Met169fs) | Likely pathogenic |
| 3338066 | NM_001540.5(HSPB1):c.610dup (p.Ala204fs) | Likely pathogenic |
| 3896881 | NM_001540.5(HSPB1):c.109dup (p.Arg37fs) | Likely pathogenic |
| 465276 | NM_001540.5(HSPB1):c.532G>T (p.Glu178Ter) | Likely pathogenic |
| 533819 | NC_000007.14:g.(?76303782)(76304193_?)del | Likely pathogenic |
| 565333 | NM_001540.5(HSPB1):c.403T>G (p.Ser135Ala) | Likely pathogenic |
| 637259 | NM_001540.5(HSPB1):c.505del (p.Met169fs) | Likely pathogenic |
| 871116 | NM_001540.5(HSPB1):c.287del (p.Arg96fs) | Likely pathogenic |
SpliceAI
240 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:76303055:G:GT | donor_gain | 1.0000 |
| 7:76303077:G:GG | donor_gain | 1.0000 |
| 7:76303077:GTGA:G | donor_loss | 1.0000 |
| 7:76303078:T:A | donor_loss | 1.0000 |
| 7:76303798:A:AG | acceptor_gain | 1.0000 |
| 7:76303798:AAAG:A | acceptor_gain | 1.0000 |
| 7:76303799:AAGG:A | acceptor_loss | 1.0000 |
| 7:76303800:A:C | acceptor_loss | 1.0000 |
| 7:76303800:A:G | acceptor_gain | 1.0000 |
| 7:76303801:G:GG | acceptor_gain | 1.0000 |
| 7:76303801:GGCAA:G | acceptor_gain | 1.0000 |
| 7:76303861:TACAC:T | donor_gain | 1.0000 |
| 7:76303862:ACAC:A | donor_gain | 1.0000 |
| 7:76303863:CAC:C | donor_gain | 1.0000 |
| 7:76303864:AC:A | donor_gain | 1.0000 |
| 7:76303865:CG:C | donor_loss | 1.0000 |
| 7:76303866:G:GG | donor_gain | 1.0000 |
| 7:76303973:T:TA | acceptor_gain | 1.0000 |
| 7:76303976:A:AG | acceptor_gain | 1.0000 |
| 7:76303976:AC:A | acceptor_gain | 1.0000 |
| 7:76303977:C:CA | acceptor_gain | 1.0000 |
| 7:76303977:C:G | acceptor_gain | 1.0000 |
| 7:76303980:CCAG:C | acceptor_loss | 1.0000 |
| 7:76303982:A:AG | acceptor_gain | 1.0000 |
| 7:76303982:A:AT | acceptor_loss | 1.0000 |
| 7:76303982:AG:A | acceptor_gain | 1.0000 |
| 7:76303982:AGGCT:A | acceptor_gain | 1.0000 |
| 7:76303983:G:GA | acceptor_gain | 1.0000 |
| 7:76303983:GG:G | acceptor_gain | 1.0000 |
| 7:76303983:GGC:G | acceptor_gain | 1.0000 |
AlphaMissense
1313 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:76302995:T:A | W95R | 1.000 |
| 7:76302995:T:C | W95R | 1.000 |
| 7:76303022:T:C | F104L | 1.000 |
| 7:76303023:T:C | F104S | 1.000 |
| 7:76303023:T:G | F104C | 1.000 |
| 7:76303024:C:A | F104L | 1.000 |
| 7:76303024:C:G | F104L | 1.000 |
| 7:76303044:T:A | V111D | 1.000 |
| 7:76303071:T:A | I120N | 1.000 |
| 7:76303071:T:C | I120T | 1.000 |
| 7:76303071:T:G | I120S | 1.000 |
| 7:76303802:G:A | G122D | 1.000 |
| 7:76303840:T:C | S135P | 1.000 |
| 7:76303849:T:C | F138L | 1.000 |
| 7:76303850:T:C | F138S | 1.000 |
| 7:76303850:T:G | F138C | 1.000 |
| 7:76303851:C:A | F138L | 1.000 |
| 7:76303851:C:G | F138L | 1.000 |
| 7:76303861:T:C | Y142H | 1.000 |
| 7:76304043:T:C | L163P | 1.000 |
| 7:76302996:G:C | W95S | 0.999 |
| 7:76302997:G:C | W95C | 0.999 |
| 7:76302997:G:T | W95C | 0.999 |
| 7:76303008:T:C | L99P | 0.999 |
| 7:76303014:T:A | V101D | 0.999 |
| 7:76303022:T:A | F104I | 0.999 |
| 7:76303022:T:G | F104V | 0.999 |
| 7:76303038:T:A | L109Q | 0.999 |
| 7:76303038:T:C | L109P | 0.999 |
| 7:76303076:G:C | G122R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000061797 (7:76304219 C>G,T), RS1000151523 (7:76303262 T>C), RS1000484222 (7:76303412 A>G,T), RS1000666283 (7:76303371 CCCCGCG>C), RS1001604174 (7:76302280 T>C), RS1001668001 (7:76302465 G>A,T), RS1002587710 (7:76302264 T>A), RS1002606976 (7:76301014 T>C), RS1003066231 (7:76301988 C>A,T), RS1003586748 (7:76304665 TGTG>T), RS1004054928 (7:76304623 A>G), RS1004519769 (7:76303614 A>C,G), RS1004998334 (7:76303749 G>A), RS1005472547 (7:76300684 G>A), RS1006067529 (7:76301942 C>G,T)
Disease associations
OMIM: gene MIM:602195 | disease phenotypes: MIM:606595, MIM:608634, MIM:118220, MIM:608323
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Charcot-Marie-Tooth disease axonal type 2F | Definitive | Autosomal dominant |
| neuronopathy, distal hereditary motor, type 2B | Moderate | Autosomal dominant |
| distal hereditary motor neuropathy type 2 | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Charcot-Marie-Tooth disease axonal type 2F | Definitive | AD |
Mondo (8): Charcot-Marie-Tooth disease axonal type 2F (MONDO:0011687), neuronopathy, distal hereditary motor, type 2B (MONDO:0012080), Charcot-Marie-Tooth disease (MONDO:0015626), distal hereditary motor neuropathy type 2 (MONDO:0015352), distal hereditary motor neuropathy (MONDO:0018894), hereditary peripheral neuropathy (MONDO:0020127), Charcot-Marie-Tooth disease type 4 (MONDO:0018995), Charcot-Marie-Tooth disease dominant intermediate C (MONDO:0012012)
Orphanet (7): Distal hereditary motor neuropathy type 2 (Orphanet:139525), Autosomal dominant Charcot-Marie-Tooth disease type 2F (Orphanet:99940), Charcot-Marie-Tooth disease/Hereditary motor and sensory neuropathy (Orphanet:166), Distal hereditary motor neuropathy (Orphanet:53739), Genetic peripheral neuropathy (Orphanet:98497), Charcot-Marie-Tooth disease type 4 (Orphanet:64749), Autosomal dominant intermediate Charcot-Marie-Tooth disease type C (Orphanet:100045)
HPO phenotypes
36 total (30 of 36 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0001178 | Ulnar claw |
| HP:0001288 | Gait disturbance |
| HP:0001315 | Reduced tendon reflexes |
| HP:0001761 | Pes cavus |
| HP:0001762 | Talipes equinovarus |
| HP:0002380 | Fasciculations |
| HP:0002460 | Distal muscle weakness |
| HP:0002522 | Areflexia of lower limbs |
| HP:0002600 | Hyporeflexia of lower limbs |
| HP:0002601 | Paresis of extensor muscles of the big toe |
| HP:0002936 | Distal sensory impairment |
| HP:0003376 | Steppage gait |
| HP:0003394 | Muscle spasm |
| HP:0003431 | Decreased motor nerve conduction velocity |
| HP:0003444 | EMG: chronic denervation signs |
| HP:0003445 | EMG: neuropathic changes |
| HP:0003470 | Paralysis |
| HP:0003477 | Peripheral axonal neuropathy |
| HP:0003581 | Adult onset |
| HP:0003584 | Late onset |
| HP:0003596 | Middle age onset |
| HP:0003677 | Slowly progressive |
| HP:0007267 | Chronic axonal neuropathy |
| HP:0007289 | Limb fasciculations |
| HP:0007328 | Impaired pain sensation |
| HP:0007340 | Lower limb muscle weakness |
| HP:0008944 | Distal lower limb amyotrophy |
| HP:0009027 | Foot dorsiflexor weakness |
| HP:0009053 | Distal lower limb muscle weakness |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006585_1383 | Blood protein levels | 2.000000e-16 |
| GCST007205_5 | Schizophrenia | 3.000000e-07 |
| GCST009731_74 | Blood protein levels in cardiovascular risk | 2.000000e-25 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010595 | heat shock protein beta-1 measurement |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002607 | Charcot-Marie-Tooth Disease | C10.500.300.200; C10.574.500.495.200; C10.668.829.800.300.200; C16.131.666.300.200; C16.320.400.375.200 |
| C564257 | Charcot-Marie-Tooth Disease, Dominant Intermediate C (supp.) | |
| C535413 | Charcot-Marie-Tooth disease, Type 2F (supp.) | |
| C580044 | Distal Hereditary Motor Neuropathy, Type II (supp.) | |
| C567084 | Neuronopathy, Distal Hereditary Motor, Type IIB (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5976 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,681 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL103667 | DORAMAPIMOD | 2 | 1,681 |
Clinical evidence (CIViC)
Drug × variant × indication: 1 predictive associations from 1 curated evidence items.
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| HSPB1 EXPRESSION | Gemcitabine | Pancreatic Ductal Adenocarcinoma | Sensitivity/Response | CIViC D | EID939 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
10 potent at pChembl≥5 of 20 total, top 10 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.22 | IC50 | 6 | nM | CHEMBL476141 |
| 7.96 | Kd | 10.94 | nM | CHEMBL5653589 |
| 7.96 | ED50 | 10.94 | nM | CHEMBL5653589 |
| 7.60 | IC50 | 25 | nM | Skepinone-L |
| 7.57 | IC50 | 27 | nM | GW775608X |
| 7.28 | IC50 | 53 | nM | CHEMBL478649 |
| 7.24 | IC50 | 58 | nM | DORAMAPIMOD |
| 7.06 | IC50 | 88 | nM | GW743024X |
| 6.80 | IC50 | 160 | nM | SB-242235 |
| 6.70 | IC50 | 200 | nM | CHEMBL1935538 |
PubChem BioAssay actives
8 with measured affinity, of 185 total; 8 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-[3-[4-(cyclopropylmethylcarbamoyl)phenyl]-4-methylphenyl]-2-piperidin-1-ylpyridine-4-carboxamide | 341051: Inhibition of HSP27 phosphorylation in IL-1-alpha-stimulated HLF cells | ic50 | 0.0060 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148557: Binding affinity to human HSPB1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0109 | uM |
| N-[3-[4-(cyclopropylmethylcarbamoyl)phenyl]-4-methylphenyl]-2-morpholin-4-ylpyridine-4-carboxamide | 341051: Inhibition of HSP27 phosphorylation in IL-1-alpha-stimulated HLF cells | ic50 | 0.0270 | uM |
| N-cyclopropyl-3-[4-(cyclopropylmethylcarbamoyl)phenyl]-4-methylbenzamide | 341051: Inhibition of HSP27 phosphorylation in IL-1-alpha-stimulated HLF cells | ic50 | 0.0530 | uM |
| 1-[3-tert-butyl-1-(4-methylphenyl)pyrazol-5-yl]-3-[4-(2-morpholin-4-ylethoxy)naphthalen-1-yl]urea | 341051: Inhibition of HSP27 phosphorylation in IL-1-alpha-stimulated HLF cells | ic50 | 0.0580 | uM |
| N-[3-[4-(cyclopropylmethylcarbamoyl)phenyl]-4-methylphenyl]furan-3-carboxamide | 341051: Inhibition of HSP27 phosphorylation in IL-1-alpha-stimulated HLF cells | ic50 | 0.0880 | uM |
| 4-[5-(4-fluorophenyl)-3-piperidin-4-ylimidazol-4-yl]-2-methoxypyrimidine | 341051: Inhibition of HSP27 phosphorylation in IL-1-alpha-stimulated HLF cells | ic50 | 0.1600 | uM |
| N-[3-[(2,5-dimethylphenyl)methoxy]-4-[methyl(methylsulfonyl)amino]phenyl]-1,3-benzodioxole-5-carboxamide | 1231949: Inhibition of HSP27 (unknown origin) by insulin aggregation assay | ic50 | 0.2000 | uM |
CTD chemical–gene interactions
186 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects cotreatment, increases expression, decreases expression, increases abundance, increases phosphorylation | 16 |
| Particulate Matter | decreases expression, increases abundance, increases expression, affects cotreatment, affects expression (+2 more) | 7 |
| Arsenic Trioxide | decreases expression, increases expression | 6 |
| Resveratrol | affects cotreatment, decreases expression, increases response to substance, increases expression, increases phosphorylation | 5 |
| bisphenol A | increases expression | 4 |
| Benzo(a)pyrene | decreases expression, increases expression | 4 |
| Doxorubicin | increases expression, affects response to substance, decreases response to substance, increases reaction, decreases expression (+1 more) | 4 |
| Estradiol | increases expression, decreases expression, affects binding, increases activity, increases reaction (+1 more) | 4 |
| Quercetin | increases response to substance, affects cotreatment, increases expression, affects expression, decreases reaction (+2 more) | 4 |
| Tobacco Smoke Pollution | affects expression, increases expression | 4 |
| Cadmium Chloride | decreases reaction, increases abundance, increases palmitoylation, affects expression, increases expression | 4 |
| SB 203580 | decreases phosphorylation, decreases reaction, increases phosphorylation, increases expression | 3 |
| Air Pollutants | increases abundance, increases expression, decreases expression | 3 |
| Cisplatin | affects response to substance, affects cotreatment, increases expression, increases reaction | 3 |
| Tretinoin | affects cotreatment, increases expression, decreases expression | 3 |
| thiodipropionic acid | increases expression | 2 |
| cobaltous chloride | increases expression | 2 |
| ochratoxin A | decreases expression | 2 |
| Vorinostat | affects cotreatment, affects expression, decreases expression | 2 |
| Caffeine | decreases expression, decreases phosphorylation | 2 |
| Cannabidiol | affects cotreatment, increases expression | 2 |
| Copper | affects binding, affects expression, decreases expression | 2 |
| Fluorouracil | affects cotreatment, affects response to substance, decreases response to substance | 2 |
| Glucose | increases secretion, decreases reaction, increases phosphorylation | 2 |
| Hydrogen Peroxide | increases expression, increases phosphorylation, decreases phosphorylation | 2 |
| Oxygen | increases reaction, increases expression, decreases reaction, affects expression | 2 |
| Plant Extracts | affects expression, affects cotreatment, decreases expression | 2 |
| Polycyclic Aromatic Hydrocarbons | increases abundance, increases expression, affects cotreatment | 2 |
| Silver | increases expression | 2 |
| Smoke | decreases expression, increases abundance, increases expression | 2 |
ChEMBL screening assays
70 unique, capped per target: 70 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2060020 | Binding | Binding affinity to Hsp27 in human SKBR3 cell lysate at 25 uM after 30 mins by mass spectrometric analysis | Identification of a class of novel tubulin inhibitors. — J Med Chem |
Cellosaurus cell lines
7 cell lines: 7 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1U0 | Abcam HeLa HSPB1 KO | Cancer cell line | Female |
| CVCL_D8MM | Ubigene HCT 116 HSPB1 KO | Cancer cell line | Male |
| CVCL_E0EI | Ubigene HeLa HSPB1 KO | Cancer cell line | Female |
| CVCL_SR77 | HAP1 HSPB1 (-) 1 | Cancer cell line | Male |
| CVCL_SR78 | HAP1 HSPB1 (-) 2 | Cancer cell line | Male |
| CVCL_SR79 | HAP1 HSPB1 (-) 3 | Cancer cell line | Male |
| CVCL_SR80 | HAP1 HSPB1 (-) 4 | Cancer cell line | Male |
Clinical trials (associated diseases)
60 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04762758 | PHASE3 | UNKNOWN | Phase III Trial Assessing the Efficacy and Safety of PXT3003 in CMT1A Patients |
| NCT00271635 | PHASE2 | COMPLETED | Ascorbic Acid Treatment in CMT1A Trial (AATIC) |
| NCT01401257 | PHASE2 | COMPLETED | Phase II, Randomized, Placebo-controlled Trial in Patients With Charcot-marie-tooth Disease Type 1A |
| NCT02561702 | PHASE2 | COMPLETED | Mexiletine for Muscle Cramps in Charcot Marie Tooth Disease |
| NCT02967679 | PHASE2 | COMPLETED | SERENDEM : MD1003 in Patients Suffering From Demyelinating Neuropathies, an Open Label Pilot Study |
| NCT03124459 | PHASE2 | TERMINATED | Study of ACE-083 in Patients With Charcot-Marie-Tooth Disease |
| NCT03254199 | PHASE2 | TERMINATED | A Study to Assess the Safety and Effectiveness of FLX-787 in Subjects With Charcot-Marie-Tooth Disease Experiencing Muscle Cramps. |
| NCT03943290 | PHASE2 | TERMINATED | Extension Study to Evaluate the Long-Term Effects of ACE-083 in Patients With Facioscapulohumeral Muscular Dystrophy (FSHD) and Charcot-Marie Tooth (CMT) Disease Types 1 and X (CMT1 and CMTX) |
| NCT05777226 | PHASE2 | UNKNOWN | Research of SORD-CMT Natural History and Epalrestat Treatment |
| NCT06482437 | PHASE2 | COMPLETED | Safety and Efficacy of NMD670 in Adult Patients With Type 1 and Type 2 Charcot-Marie-Tooth Disease |
| NCT01289704 | PHASE2/PHASE3 | UNKNOWN | Treadmill, Stretching and Proprioceptive Exercise (TreSPE) Rehabilitation Program for Charcot-Marie-Tooth Neuropathy Type 1A (CMT1A) |
| NCT00541164 | PHASE1/PHASE2 | COMPLETED | Effects of Coenzyme Q10 on Charcot-Marie-Tooth Disease |
| NCT05361031 | PHASE1/PHASE2 | COMPLETED | The Safety and Tolerability of Engensis (VM202) in Patients With Charcot-Marie-Tooth Disease Subtype 1A (CMT1A) |
| NCT07223632 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Treatment of Charcot-Marie-Tooth Disease, Axonal, Type 2S (CMT2S) in an Individual Patient |
| NCT00149045 | Not specified | COMPLETED | Follow up and Observation of Charcot Marie Tooth Disease in Families |
| NCT01193075 | Not specified | RECRUITING | Natural History Evaluation of Charcot Marie Tooth Disease (CMT) Types CMT1B, CMT2A, CMT4A, CMT4C, and Others |
| NCT01203085 | Not specified | COMPLETED | Development of Charcot Marie Tooth Disease (CMT) Pediatric Scale for Children With CMT |
| NCT01455623 | Not specified | COMPLETED | Development and Validation of a Disability Severity Index for CMT |
| NCT01918826 | Not specified | UNKNOWN | Evaluation of the Analgesic Efficiency of the Transcutaneous Neurostimulation in the Charcot Syndrome Marie Tooth on the Pains of Lower Limbs |
| NCT02001038 | Not specified | COMPLETED | Survey of Current Management of Orthopaedic Complications in CMT Patients |
| NCT02011204 | Not specified | COMPLETED | Study of Electrical Impedance Myography (EIM) in ALS |
| NCT02194010 | Not specified | COMPLETED | Disability Severity Scale (DSI) and Hereditary Motor and Sensory Neuropathy Overall Disability Scale (HMSN-R-ODS) |
| NCT02429947 | Not specified | COMPLETED | An Analysis of the Symptomatic Domains Most Relevant to Charcot Marie Tooth Neuropathy (CMT) Patients |
| NCT02532244 | Not specified | COMPLETED | Genetics of Pediatric-Onset Motor Neuron and Neuromuscular Diseases |
| NCT02699190 | Not specified | COMPLETED | LeukoSEQ: Whole Genome Sequencing as a First-Line Diagnostic Tool for Leukodystrophies |
| NCT02788734 | Not specified | COMPLETED | Patient Reported Outcomes Measures (PROM) in Carpal Tunnel Therapies in Patients With Inherited Neuropathies |
| NCT02979145 | Not specified | UNKNOWN | Charcot-Marie-Tooth Disease (CMT) Infant Scale (INC-6611) |
| NCT03047369 | Not specified | RECRUITING | The Myelin Disorders Biorepository Project |
| NCT03460951 | Not specified | COMPLETED | Diffusion Tensor Imaging in Chronic Inflammatory Demyelinating Polyneuropathy (PIDC) |
| NCT03715283 | Not specified | COMPLETED | Change in MUNIX in Patients With CMT1A Undergoing a Home Ankle Strengthening Program Versus Standard of Care |
| NCT03782883 | Not specified | COMPLETED | The Impact of Charcot-Marie-Tooth Disease in the Real World |
| NCT03810508 | Not specified | TERMINATED | A Natural History Study of Charcot-Marie-Tooth 4J (CMT4J) |
| NCT03966287 | Not specified | COMPLETED | Analysis of Pain and Quality of Life in Patients With Charcot-Marie-Tooth Neuropathy (CMT) |
| NCT04010188 | Not specified | RECRUITING | A Registered Cohort Study on Charcot-Marie-Tooth Disease |
| NCT04283175 | Not specified | COMPLETED | Validation Study of Posturology Platforms for Evaluating Postural Control of Hemiparetic and Neuro-muscular Patients |
| NCT04461613 | Not specified | UNKNOWN | Physical Activity in Persons With Charcot-Marie-Tooth: Developing a Measurement Instrument |
| NCT04786522 | Not specified | COMPLETED | Irisin Levels in Patients With Charcot-Marie-Tooth (CMT) Disease |
| NCT04967716 | Not specified | UNKNOWN | Genetics of Charcot-Marie-Tooth Dystrophy and Related Diseases |
| NCT04980807 | Not specified | COMPLETED | Observational Study of Neuromuscular Function in CMT Type 1&2 and Healthy Controls |
| NCT05011006 | Not specified | NOT_YET_RECRUITING | NT-3 Levels and Function in Individuals With CMT |
Related Atlas pages
- Associated diseases: neuronopathy, distal hereditary motor, type 2B, Charcot-Marie-Tooth disease axonal type 2F, distal hereditary motor neuropathy type 2, pancreatic ductal adenocarcinoma
- Biomarker drugs (CIViC) (drugs whose response is associated with variants in this gene — CIViC predictive evidence, not targeting): Gemcitabine
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Charcot-Marie-Tooth disease axonal type 2F, Charcot-Marie-Tooth disease dominant intermediate C, Charcot-Marie-Tooth disease type 4, distal hereditary motor neuropathy, distal hereditary motor neuropathy type 2, hereditary peripheral neuropathy, neuronopathy, distal hereditary motor, type 2B, pancreatic ductal adenocarcinoma