HTR4

gene
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Also known as 5-HT4

Summary

HTR4 (5-hydroxytryptamine receptor 4, HGNC:5299) is a protein-coding gene on chromosome 5q32, encoding 5-hydroxytryptamine receptor 4 (Q13639). G-protein coupled receptor for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone and a mitogen.

This gene is a member of the family of serotonin receptors, which are G protein coupled receptors that stimulate cAMP production in response to serotonin (5-hydroxytryptamine). The gene product is a glycosylated transmembrane protein that functions in both the peripheral and central nervous system to modulate the release of various neurotransmitters. Multiple transcript variants encoding proteins with distinct C-terminal sequences have been described.

Source: NCBI Gene 3360 — RefSeq curated summary.

At a glance

  • GWAS associations: 23
  • Clinical variants (ClinVar): 63 total
  • Druggable target: yes — 17 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_000870

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:5299
Approved symbolHTR4
Name5-hydroxytryptamine receptor 4
Location5q32
Locus typegene with protein product
StatusApproved
Aliases5-HT4
Ensembl geneENSG00000164270
Ensembl biotypeprotein_coding
OMIM602164
Entrez3360

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 8 protein_coding, 2 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined, 1 retained_intron

ENST00000360693, ENST00000377888, ENST00000517929, ENST00000519495, ENST00000520086, ENST00000520514, ENST00000521124, ENST00000521530, ENST00000521735, ENST00000522588, ENST00000524063, ENST00000887163

RefSeq mRNA: 6 — MANE Select: NM_000870 NM_000870, NM_001040169, NM_001040172, NM_001040173, NM_001286410, NM_199453

CCDS: CCDS34270, CCDS34271, CCDS34272, CCDS34273, CCDS4291, CCDS75353

Canonical transcript exons

ENST00000377888 — 7 exons

ExonStartEnd
ENSE00001082935148509456148510024
ENSE00003494895148523193148523346
ENSE00003593351148550137148550262
ENSE00003593486148548668148548868
ENSE00003597593148636989148637061
ENSE00003900844148481547148483293
ENSE00003997493148654062148654527

Expression profiles

Bgee: expression breadth ubiquitous, 244 present calls, max score 91.41.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2601 / max 25.9807, expressed in 79 samples.

FANTOM5 promoters (6 alternative TSS)

Promoter IDTPM avgSamples expressed
641140.4339199
641000.159653
641020.049425
641010.040219
641040.00692
641030.00402

Top tissues by expression

278 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
type B pancreatic cellCL:000016991.41silver quality
triceps brachiiUBERON:000150991.40gold quality
olfactory bulbUBERON:000226491.28gold quality
diaphragmUBERON:000110390.92gold quality
gluteal muscleUBERON:000200090.67silver quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047389.68silver quality
tongue squamous epitheliumUBERON:000691989.68gold quality
lateral globus pallidusUBERON:000247688.95gold quality
vena cavaUBERON:000408785.78silver quality
vastus lateralisUBERON:000137985.77silver quality
quadriceps femorisUBERON:000137785.29silver quality
substantia nigra pars reticulataUBERON:000196684.92gold quality
substantia nigra pars compactaUBERON:000196584.77gold quality
epithelium of nasopharynxUBERON:000195184.17silver quality
gingival epitheliumUBERON:000194984.09silver quality
body of tongueUBERON:001187683.68silver quality
lateral nuclear group of thalamusUBERON:000273683.50silver quality
skeletal muscle tissue of biceps brachiiUBERON:000450282.92gold quality
biceps brachiiUBERON:000150782.68gold quality
nasal cavity epitheliumUBERON:000538482.64silver quality
hair follicleUBERON:000207382.30gold quality
cardiac muscle of right atriumUBERON:000337981.87silver quality
upper arm skinUBERON:000426381.50silver quality
myocardiumUBERON:000234981.32silver quality
subthalamic nucleusUBERON:000190681.22gold quality
cervix squamous epitheliumUBERON:000692280.88silver quality
trabecular bone tissueUBERON:000248380.54gold quality
tongueUBERON:000172380.44gold quality
orbitofrontal cortexUBERON:000416780.03silver quality
gingivaUBERON:000182879.95silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes6.29

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

138 targeting HTR4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-1193100.0065.93529
HSA-MIR-432-3P100.0067.86705
HSA-MIR-4425100.0067.591049
HSA-MIR-450A-1-3P100.0069.331837
HSA-MIR-6127100.0066.762188
HSA-MIR-6133100.0066.482064
HSA-MIR-30A-5P100.0076.313233
HSA-MIR-30B-5P100.0076.293248
HSA-MIR-30C-5P100.0076.293248
HSA-MIR-30D-5P100.0076.323233
HSA-MIR-30E-5P100.0076.323242
HSA-MIR-4510100.0066.602050
HSA-MIR-6129100.0066.462080
HSA-MIR-6130100.0066.692012
HSA-MIR-196A-1-3P99.9972.152772
HSA-MIR-450099.9972.722367
HSA-MIR-103A-3P99.9869.141595
HSA-MIR-10799.9869.141595
HSA-LET-7A-5P99.9872.291790
HSA-LET-7B-5P99.9872.311790
HSA-LET-7C-5P99.9872.291790
HSA-LET-7E-5P99.9872.291790
HSA-LET-7F-5P99.9872.561784
HSA-LET-7G-5P99.9872.371784
HSA-LET-7I-5P99.9872.371788
HSA-MIR-98-5P99.9872.331787
HSA-MIR-3688-3P99.9772.022834
HSA-LET-7D-5P99.9671.761632
HSA-MIR-445899.9671.641650
HSA-MIR-548AB99.9571.313488

Literature-anchored findings (GeneRIF, showing 40)

  • This paper presents an analysis of the SH3TC2 promoter after identifying a read-through transcript of the SH3TC2 and HTR4 loci. Available data suggests HTR4 is a separate locus with its own promoter, and not the product of a bi-cistronic transcript. (PMID:11716477)
  • Computational model of the complex between GR113808 and the 5-HT4 receptor guided by site-directed mutagenesis and the crystal structure of rhodopsin. (PMID:11989623)
  • The polymorphisms associated with mood disorder were located within the region that encodes the divergent C-terminal tails of the 5-HT(4) receptor. (PMID:12399948)
  • report the activation of the extracellular signal-regulated kinases (ERKs) 1 and 2 (p44 and p42 MAP kinase) through the human serotonin receptors 5-HT(4(b)) and 5-HT(7(a)) (PMID:12446729)
  • results show an overexpression of the 5-HT4 receptor in cisapride-responsive ACTH-independent bilateral macronodular adrenal hyperplasia (PMID:12519861)
  • A highly significant association between schizophrenia and haplotype A-T (OR = 0.13 [0.03-0.58]) was detected. (PMID:12898568)
  • Our results suggest a complex regulation of the h5-HT4 receptor gene expression involving distinct promoters and non-coding exons. (PMID:15575821)
  • secretion of the non-amyloidogenic form of amyloid precursor protein, sAPPalpha induced by the 5-HT4(e) receptor isoform was not due to a general boost of the constitutive secretory pathway but rather to its specific effect on alpha-secretase activity (PMID:15710402)
  • inhibition of Na+/H+ exchange activity by serotonin is mediated by 5-HT4 receptors in Caco-2 cells (PMID:15825078)
  • coexpression of h5-HT4R and beta2-adrenergic receptor (beta2AR) led to their heterodimerization (PMID:15896782)
  • the uncoupling and endocytosis of 5-HT4R require different GRK2 concentrations and involve distinct molecular events (PMID:15919661)
  • development of an adenovirus expression system to examine the properties of two human 5-HT4 receptor splice variants, h5-HT4(b) and h5-HT4(d), expressed in adult cardiomyocytes devoid of native 5-HT4 receptors (PMID:15950987)
  • These findings provide the first evidence of differential internalization between the two splice variants, 5-HT(4a) and 5-HT(4b) receptors. (PMID:16209130)
  • We show overexpression & different splicing of 5-HT4 receptor in aldosterone-producing adenoma tissues in comparison with normal adrenocortical tissue.Isoforms (a) & (b) were not expressed in any APA but were present in majority of normal adrenal cortex. (PMID:16322401)
  • These results suggest that the HTR4 gene may play a role in the genetic predisposition to ADHD. (PMID:16563621)
  • Data show that 5-HT(4) receptor stimulation in primary neurons produced a potent but transient activation of the ERK pathway that is dependent on Src tyrosine kinase but totally independent of beta-arrestin. (PMID:17377064)
  • We show that disulfide bridges between Cys112 and Cys145 located within transmembrane domain 3 and transmembrane domain 4, respectively, are of critical importance for 5-HT(4)R dimer formation. (PMID:17379184)
  • Our results indicate that h5-HT(4(b)) is the dominant cardiac isoform of human 5-HT(4) receptors and its expression is increased in CAF. (PMID:17418812)
  • Results describe regional differences in expression of TPH-1, SERT, 5-HT(3) and 5-HT(4) receptors in the stomach and duodenum. (PMID:17509016)
  • Functional activiy of 5-HT4 receptors was studied in children with congenital heart disease. (PMID:17603679)
  • In this review, the pathways regulating either beta- or gamma-secretase may be differentially controlled by 5-HT4 receptor isoforms. (PMID:18322379)
  • In failing human ventricle, 5-HT(4) receptor-mediated positive inotropic response was regulated by PDEs in a manner similar to that in postinfarction rat hearts;5-HT, PDE3 and PDE4 may have pathophysiological functions in heart failure. (PMID:18846035)
  • 5-HT4 expression is lower in heart ventricle vs. atrium. Isoform expression in atrium and ventricle is similar. There is a parallel increase of cAMP and in the phosphorylation state of regulatory proteins following stimulation with 5-HT in the atrium. (PMID:19002436)
  • The human 5HT4 receptor, when placed under the influence of the mouse opsin promoter and an opsin rod outer segment (ROS) targeting sequence, localized to ROS of transgenic mouse retina. (PMID:19053287)
  • No association was found in the family sample betweewn HTR4 and schizophrenia. (PMID:19892407)
  • Data show expression of TNS1, GSTCD, AGER, HTR4 and THSD4 in lung tissue and indicate potential targets for interventions to alleviate respiratory disease. (PMID:20010834)
  • This study demonistrated that 5-HT4 receptor is present in the human thalamus prenatally. (PMID:20538346)
  • The relatively stable HT4 5- receptor binding with aging contrasts others in subtypes of receptors, which generally decrease with aging. (PMID:21364600)
  • SNP and haplotypes of the HTR4 gene were associated with the asthma phenotype and genetic variation of HTR4 may affect susceptibility to the development of asthma. (PMID:21382128)
  • 5-HT4 receptor binding was a positively correlated to amyloid beta (A4) burden and negatively to MMSE score of the Alzheimer disease patients (PMID:21673407)
  • HTR4 polymorphism associated with COPD risk and lung function decline (PMID:21965014)
  • The occurrence of heterogeneous post-translational modifications (PTMs) on transgenic proteins, as well as the complications that non-native PTMs can cause, highlight the characterization of both endogenous and heterologous protein targets. (PMID:22145929)
  • Mucosal 5-HT(4) receptor activation can mediate the prokinetic and antinociceptive actions of 5-HT(4)R agonists. (PMID:22226658)
  • staining pattern of serotonin receptors in ovary indicates functional role in ovarian physiology. In ovarian tumours, expression is in harmony with a tumour suppressor role in ovarian carcinogenesis, which is supported by observations in the literature (PMID:22493371)
  • Our findings are consistent with a model wherein the 5-HTTLPR S allele is associated with relatively increased serotonin levels. (PMID:22584237)
  • These findings suggest that the 5-HT(4)R is critically involved in reward circuits that regulate people’s food intake (PMID:22709820)
  • Results suggest an important role for the CHRNA5/3 region as a genetic risk factor for airflow obstruction independent of smoking and implicate the HTR4 gene in the etiology of airflow obstruction. (PMID:22837378)
  • Our results suggest that HTR4 polymorphisms may not play a major role in the susceptibility for suicidal behavior in subjects with schizophrenia. (PMID:22842674)
  • These results suggest a prominent role of 5-HT(4)R in promoting angiogenesis. (PMID:22903372)
  • This is the first transgenic model to study human 5-HTreceptor in the atrium ex vivo or in vivo. (PMID:23307014)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriohtr4ENSDARG00000061940
mus_musculusHtr4ENSMUSG00000026322
rattus_norvegicusHtr4ENSRNOG00000019134

Paralogs (25): DRD4 (ENSG00000069696), HRH3 (ENSG00000101180), HRH2 (ENSG00000113749), CHRM3 (ENSG00000133019), HRH4 (ENSG00000134489), TAAR5 (ENSG00000135569), GPR84 (ENSG00000139572), GPR161 (ENSG00000143147), TAAR2 (ENSG00000146378), TAAR6 (ENSG00000146383), TAAR8 (ENSG00000146385), TAAR1 (ENSG00000146399), DRD3 (ENSG00000151577), CHRM1 (ENSG00000168539), DRD5 (ENSG00000169676), HTR1A (ENSG00000178394), HTR1D (ENSG00000179546), CHRM4 (ENSG00000180720), CHRM2 (ENSG00000181072), DRD1 (ENSG00000184845), CHRM5 (ENSG00000184984), GPR21 (ENSG00000188394), HRH1 (ENSG00000196639), GPR52 (ENSG00000203737), TAAR9 (ENSG00000237110)

Protein

Protein identifiers

5-hydroxytryptamine receptor 4Q13639 (reviewed: Q13639)

Alternative names: Serotonin receptor 4

All UniProt accessions (4): A0A2D3FAF9, Q13639, E5RHV8, E5RK45

UniProt curated annotations — full annotation on UniProt →

Function. G-protein coupled receptor for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone and a mitogen. Ligand binding causes a conformation change that triggers signaling via guanine nucleotide-binding proteins (G proteins) and modulates the activity of downstream effectors. HTR4 is coupled to G(s) G alpha proteins and mediates activation of adenylate cyclase activity.

Subunit / interactions. Interacts (via C-terminus 330-346 AA) with GRK5; this interaction is promoted by 5-HT (serotonin). Interacts with MAGI2, MPP3, NHERF1 and SNX27 isoforms 1 and 2. Forms a complex including NHERF1 and EZR. Interacts with PATJ, NOS1 and SEC23A.

Subcellular location. Cell membrane. Endosome membrane.

Tissue specificity. Expressed in ileum, brain, and atrium, but not in the ventricle. Mainly expressed in atria and cardiac ventricle. Expressed in all cardiovascular tissues analyzed.

Domain organisation. Specificity for G(s) G alpha proteins is determined by the length of transmembrane regions 5 and 6 (TM5 and TM6).

Similarity. Belongs to the G-protein coupled receptor 1 family.

Isoforms (9)

UniProt IDNamesCanonical?
Q13639-15-HT4(B)yes
Q13639-25-HT4(A), 5-HT4S
Q13639-35-HT4(C)
Q13639-45-HT4(D)
Q13639-55-HT4(E), H5-HT4(g)
Q13639-65-HT4(F)
Q13639-75-HT4(G)
Q13639-85-HT4(I)
Q13639-95-HT4c1

RefSeq proteins (6): NP_000861, NP_001035259, NP_001035262, NP_001035263, NP_001273339, NP_955525 (=MANE)

Domains & families (InterPro)

IDNameType
IPR000276GPCR_RhodpsnFamily
IPR0015205HT4_rcptFamily
IPR017452GPCR_Rhodpsn_7TMDomain

Pfam: PF00001

UniProt features (57 total): helix 14, mutagenesis site 10, topological domain 8, splice variant 8, transmembrane region 7, turn 3, binding site 2, sequence variant 2, chain 1, glycosylation site 1, disulfide bond 1

Structure

Experimental structures (PDB)

4 structures.

PDBMethodResolution (Å)
5EM9X-RAY DIFFRACTION1.6
7XT8ELECTRON MICROSCOPY3.1
7XT9ELECTRON MICROSCOPY3.2
7XTAELECTRON MICROSCOPY3.2

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q13639-F181.600.58

Antibody-complex structures (SAbDab): 27XT8, 7XTA

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (2): 100; 279

Disulfide bonds (1): 93–184

Glycosylation sites (1): 7

Mutagenesis-validated functional residues (10):

PositionPhenotype
100abolished g-protein coupled receptor activity.
100in d3.32n mutant; abolihed binding to serotonin.
104decreased g-protein coupled receptor activity.
105abolished g-protein coupled receptor activity.
186decreased g-protein coupled receptor activity.
193decreased g-protein coupled receptor activity.
197in s5.43a mutant; abolihed binding to serotonin.
272abolished g-protein coupled receptor activity.
275abolished g-protein coupled receptor activity.
302in y7.43a mutant; abolihed binding to serotonin. abolished g-protein coupled receptor activity.

Function

Pathways and Gene Ontology

Reactome pathways

8 pathways

IDPathway
R-HSA-390666Serotonin receptors
R-HSA-418555G alpha (s) signalling events
R-HSA-162582Signal Transduction
R-HSA-372790Signaling by GPCR
R-HSA-373076Class A/1 (Rhodopsin-like receptors)
R-HSA-375280Amine ligand-binding receptors
R-HSA-388396GPCR downstream signalling
R-HSA-500792GPCR ligand binding

MSigDB gene sets: 216 (showing top): MORF_RAGE, GOBP_DIGESTION, MODULE_52, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, MORF_FLT1, GOMF_G_PROTEIN_COUPLED_SEROTONIN_RECEPTOR_ACTIVITY, YAGI_AML_WITH_INV_16_TRANSLOCATION, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, GOBP_SYNAPSE_ASSEMBLY, MODULE_45, MODULE_64, MORF_ATRX, ASTON_MAJOR_DEPRESSIVE_DISORDER_DN, GOBP_REGULATION_OF_CELL_JUNCTION_ASSEMBLY, MORF_ESR1

GO Biological Process (14): G protein-coupled receptor signaling pathway (GO:0007186), G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger (GO:0007187), adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189), adenylate cyclase-activating serotonin receptor signaling pathway (GO:0007192), adenylate cyclase-inhibiting serotonin receptor signaling pathway (GO:0007198), chemical synaptic transmission (GO:0007268), maintenance of gastrointestinal epithelium (GO:0030277), regulation of appetite (GO:0032098), mucus secretion (GO:0070254), large intestinal transit (GO:0120056), regulation of postsynapse assembly (GO:0150052), system process (GO:0003008), signal transduction (GO:0007165), G protein-coupled serotonin receptor signaling pathway (GO:0098664)

GO Molecular Function (6): G protein-coupled serotonin receptor activity (GO:0004993), neurotransmitter receptor activity (GO:0030594), serotonin binding (GO:0051378), serotonin receptor activity (GO:0099589), G protein-coupled receptor activity (GO:0004930), protein binding (GO:0005515)

GO Cellular Component (9): cytoplasm (GO:0005737), plasma membrane (GO:0005886), endosome membrane (GO:0010008), membrane (GO:0016020), dendrite (GO:0030425), postsynapse (GO:0098794), glutamatergic synapse (GO:0098978), endosome (GO:0005768), synapse (GO:0045202)

Reactome top-level categories

Rollup of top-6 pathways:

CategoryPathways
Signaling by GPCR2
Amine ligand-binding receptors1
GPCR downstream signalling1
Signal Transduction1
GPCR ligand binding1
Class A/1 (Rhodopsin-like receptors)1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
G protein-coupled receptor signaling pathway3
cellular anatomical structure3
G protein-coupled serotonin receptor signaling pathway2
transmembrane signaling receptor activity2
synapse2
G protein-coupled receptor activity1
signal transduction1
adenylate cyclase-modulating G protein-coupled receptor signaling pathway1
adenylate cyclase activator activity1
adenylate cyclase-activating G protein-coupled receptor signaling pathway1
serotonin receptor signaling pathway1
Gi/o-coupled serotonin receptor activity1
adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway1
anterograde trans-synaptic signaling1
epithelial structure maintenance1
digestive system process1
response to nutrient levels1
regulation of biological quality1
body fluid secretion1
secretion by tissue1
intestinal motility1
regulation of synapse assembly1
postsynapse assembly1
regulation of postsynapse organization1
multicellular organismal process1
cell communication1
cellular process1
signaling1
regulation of cellular process1
cellular response to stimulus1
G protein-coupled serotonin receptor activity1
G protein-coupled amine receptor activity1
serotonin binding1
signaling receptor activity1
cation binding1
amine binding1
heterocyclic compound binding1
binding1
intracellular anatomical structure1
membrane1

Protein interactions and networks

STRING

402 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
HTR4GIPRP48546639
HTR4GIPP09681569
HTR4KCNH2Q12809557
HTR4OR52J3Q8NH60497
HTR4LRRC10Q5BKY1462
HTR4OR5B17Q8NGF7433
HTR4OR5B3Q8NH48432
HTR4NPR3P17342419
HTR4MLNP12872395
HTR4POMCP01189391
HTR4RENP00797387
HTR4ITGB3P05106372
HTR4HTR3AP46098369
HTR4AVPR1AP37288368
HTR4CNGA4Q8IV77363

IntAct

40 interactions, top by confidence:

ABTypeScore
GPR37HTR4psi-mi:“MI:0915”(physical association)0.580
GPR37HTR4psi-mi:“MI:2364”(proximity)0.580
GPR37HTR4psi-mi:“MI:0403”(colocalization)0.580
GPRIN2HTR4psi-mi:“MI:0915”(physical association)0.510
HTR4HTR4psi-mi:“MI:2364”(proximity)0.470
HTR4HTR4psi-mi:“MI:0915”(physical association)0.470
HTR4psi-mi:“MI:0915”(physical association)0.400
RAMP1HTR4psi-mi:“MI:0915”(physical association)0.400
RAMP2HTR4psi-mi:“MI:0915”(physical association)0.400
HTR4RAMP2psi-mi:“MI:0915”(physical association)0.400
HTR4RAMP3psi-mi:“MI:0915”(physical association)0.400
RAMP3HTR4psi-mi:“MI:0915”(physical association)0.400
HTR4RAMP1psi-mi:“MI:0915”(physical association)0.400
TMEM230HTR4psi-mi:“MI:0915”(physical association)0.370
CD81HTR4psi-mi:“MI:0915”(physical association)0.370
CLTBHTR4psi-mi:“MI:0915”(physical association)0.370
GDF1HTR4psi-mi:“MI:0915”(physical association)0.370
GHITMHTR4psi-mi:“MI:0915”(physical association)0.370
ANO10HTR4psi-mi:“MI:0915”(physical association)0.370
CERS1HTR4psi-mi:“MI:0915”(physical association)0.370
MGLLHTR4psi-mi:“MI:0915”(physical association)0.370

BioGRID (22): GPRIN2 (Affinity Capture-Western), GPR37 (Affinity Capture-Western), GPRIN2 (Co-localization), GPR37 (Co-localization), GPRIN2 (Two-hybrid), GPR37 (Two-hybrid), TMEM230 (Two-hybrid), CD81 (Two-hybrid), CLTB (Two-hybrid), GDF1 (Two-hybrid), GHITM (Two-hybrid), ANO10 (Two-hybrid), CERS1 (Two-hybrid), MGLL (Two-hybrid), ELOVL5 (Two-hybrid)

ESM2 similar proteins: A0A678XMK4, A6QLE7, G3M4F8, O08890, O42384, O42574, O70528, P07550, P0C5J4, P10608, P17124, P18762, P25021, P25102, P28221, P28222, P28334, P28564, P28565, P28566, P30939, P30940, P35404, P35406, P46636, P47747, P56496, P60020, P60021, P61752, P79748, P97288, Q02284, Q0EAB5, Q13639, Q28044, Q28509, Q588Y6, Q61224, Q62758

Diamond homologs: A0A678XMK4, O02662, O02666, O14804, O19091, O42574, O70528, O77680, O77700, P07700, P11617, P17124, P18089, P21728, P23944, P25021, P25100, P25102, P25115, P28221, P28565, P35405, P35406, P42289, P42290, P42291, P43141, P46626, P47747, P47800, P49145, P50406, P53452, P53454, P60021, P61752, P79400, P97288, P97292, P97714

SIGNOR signaling

10 interactions.

AEffectBMechanism
HTR4“up-regulates activity”GNASbinding
HTR4“up-regulates activity”GNALbinding
HTR4“up-regulates activity”GNAI1binding
HTR4“up-regulates activity”GNAI3binding
HTR4“up-regulates activity”GNAO1binding
HTR4“up-regulates activity”GNAZbinding
HTR4“up-regulates activity”GNAQbinding
HTR4“up-regulates activity”GNA14binding
serotonin(1+)“up-regulates activity”HTR4“chemical activation”
serotonin“up-regulates activity”HTR4“chemical activation”

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 21 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

GO biological processes:

GO termPartnersFoldFDR
calcium ion transport545.3×1e-05

Disease & clinical

Clinical variants and AI predictions

ClinVar

63 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance52
Likely benign5
Benign4

Top pathogenic / likely-pathogenic (0)

SpliceAI

1965 predictions. Top by Δscore:

VariantEffectΔscore
5:148548826:C:CTacceptor_gain1.0000
5:148550131:GCTCA:Gdonor_loss1.0000
5:148550132:CTCA:Cdonor_loss1.0000
5:148550133:TCA:Tdonor_loss1.0000
5:148550134:CA:Cdonor_loss1.0000
5:148550136:C:CTdonor_loss1.0000
5:148550258:CAGAA:Cacceptor_gain1.0000
5:148550260:GAAC:Gacceptor_loss1.0000
5:148550262:ACT:Aacceptor_loss1.0000
5:148550263:C:CCacceptor_gain1.0000
5:148550263:C:CGacceptor_loss1.0000
5:148550264:T:Cacceptor_loss1.0000
5:148654061:C:CTdonor_loss1.0000
5:148654061:CCCG:Cdonor_gain1.0000
5:148509451:CTCA:Cdonor_loss0.9900
5:148509452:TCA:Tdonor_loss0.9900
5:148509453:CACC:Cdonor_loss0.9900
5:148509454:A:ACdonor_gain0.9900
5:148509455:C:CAdonor_loss0.9900
5:148509455:C:CCdonor_gain0.9900
5:148509971:C:CTacceptor_gain0.9900
5:148510032:T:Cacceptor_gain0.9900
5:148510032:T:TCacceptor_gain0.9900
5:148523184:GATAC:Gdonor_loss0.9900
5:148523185:ATACT:Adonor_loss0.9900
5:148523186:TAC:Tdonor_loss0.9900
5:148523187:ACTC:Adonor_loss0.9900
5:148523188:C:CGdonor_loss0.9900
5:148523189:TCACC:Tdonor_loss0.9900
5:148523190:CACCA:Cdonor_loss0.9900

AlphaMissense

2552 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
5:148509718:A:GW272R1.000
5:148509718:A:TW272R1.000
5:148509630:C:TG301D0.999
5:148509637:A:GW299R0.999
5:148509637:A:TW299R0.999
5:148509704:A:CF276L0.999
5:148509704:A:TF276L0.999
5:148509706:A:GF276L0.999
5:148509707:G:CF275L0.999
5:148509707:G:TF275L0.999
5:148509709:A:GF275L0.999
5:148509711:G:CP274R0.999
5:148509716:C:AW272C0.999
5:148509716:C:GW272C0.999
5:148509721:A:GC271R0.999
5:148509728:G:CF268L0.999
5:148509728:G:TF268L0.999
5:148509730:A:GF268L0.999
5:148509921:G:CP204R0.999
5:148509921:G:TP204Q0.999
5:148509929:G:CF201L0.999
5:148509929:G:TF201L0.999
5:148509931:A:GF201L0.999
5:148523264:A:GW146R0.999
5:148523264:A:TW146R0.999
5:148548668:C:AR118M0.999
5:148550178:G:CN37K0.999
5:148550178:G:TN37K0.999
5:148509575:A:CF319L0.998
5:148509575:A:TF319L0.998

dbSNP variants (sampled 300 via entrez): RS1000000263 (5:148481530 A>G), RS1000004399 (5:148452819 A>T), RS1000011599 (5:148492384 T>A), RS1000079867 (5:148622477 T>C), RS1000084690 (5:148483848 T>C), RS1000093875 (5:148499008 T>G), RS1000099746 (5:148567732 T>A,G), RS1000111497 (5:148544890 A>C), RS1000112089 (5:148535715 C>G,T), RS1000124042 (5:148561643 C>G), RS1000131562 (5:148488071 G>A), RS1000138970 (5:148536052 C>T), RS1000139377 (5:148640564 G>A), RS1000183328 (5:148631096 T>C), RS1000185381 (5:148545207 A>G)

Disease associations

OMIM: gene MIM:602164 | disease phenotypes:

GenCC curated gene-disease

Mondo (2): lung adenocarcinoma (MONDO:0005061), squamous cell carcinoma (MONDO:0005096)

Orphanet (1): NON RARE IN EUROPE: Adenocarcinoma of the lung (Orphanet:415268)

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

23 associations (top):

StudyTraitp-value
GCST000542_7Pulmonary function1.000000e-11
GCST000544_5Pulmonary function4.000000e-09
GCST001588_14Periodontal microbiota2.000000e-06
GCST001621_2Airflow obstruction4.000000e-09
GCST001784_1Pulmonary function (smoking interaction)5.000000e-17
GCST004147_10Chronic obstructive pulmonary disease5.000000e-26
GCST004183_5Lung function (FEV1)2.000000e-11
GCST004185_39Lung function (FEV1/FVC)8.000000e-23
GCST007267_48Systolic blood pressure6.000000e-14
GCST007268_72Diastolic blood pressure2.000000e-10
GCST007429_11Lung function (FVC)6.000000e-06
GCST007430_106Peak expiratory flow6.000000e-33
GCST007431_100Lung function (FEV1/FVC)2.000000e-96
GCST007432_165FEV17.000000e-47
GCST007611_18Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)1.000000e-13
GCST007692_54Chronic obstructive pulmonary disease3.000000e-33
GCST007941_26Medication use (adrenergics, inhalants)7.000000e-09
GCST008357_10Mood instability1.000000e-08
GCST008647_9Urinary sodium excretion9.000000e-12
GCST008659_4Lung function in heavy smokers (low FEV1 vs high FEV1)5.000000e-09
GCST008664_6Lung function (low FEV1 vs high FEV1)9.000000e-11
GCST90002383_217Hematocrit1.000000e-09
GCST90002384_116Hemoglobin3.000000e-09

EFO canonical traits (12, from GWAS)

EFO IDTrait name
EFO:0003892pulmonary function measurement
EFO:0004713FEV/FVC ratio
EFO:0004314forced expiratory volume
EFO:0006335systolic blood pressure
EFO:0006336diastolic blood pressure
EFO:0004312vital capacity
EFO:0009718peak expiratory flow
EFO:0009941Inhalant adrenergic use measurement
EFO:0008475mood instability measurement
EFO:0009282sodium measurement
EFO:0004348hematocrit
EFO:0004509hemoglobin measurement

MeSH disease descriptors (1)

DescriptorNameTree numbers
D002294Carcinoma, Squamous CellC04.557.470.200.400; C04.557.470.700.400

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL1875 (SINGLE PROTEIN), CHEMBL2096904 (PROTEIN FAMILY)

Molecules with ChEMBL bioactivity

17 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 318,182 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL117287PRUCALOPRIDE42,516
CHEMBL1729CISAPRIDE414,365
CHEMBL56564TROPISETRON419,312
CHEMBL76370TEGASEROD44,580
CHEMBL86METOCLOPRAMIDE437,825
CHEMBL11IMIPRAMINE448,893
CHEMBL39SEROTONIN3186,160
CHEMBL2087337VELUSETRAG2107
CHEMBL2402904FELCISETRAG2158
CHEMBL3306918PRX-031402147
CHEMBL356359PIBOSEROD2316
CHEMBL471036LITOXETINE22,122
CHEMBL7257MEBUFOTENIN21,595
CHEMBL2152922PF-04995274123
CHEMBL2179582PF-033827921
CHEMBL3950712DA-6886111
CHEMBL4297327SUVN-D4010152

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB variants

4 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs1971431HTR40.000
rs4264931HTR40.000
rs2068190HTR40.000
rs1862342HTR40.000

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: gpcr — 5-Hydroxytryptamine receptors

Most potent curated ligand interactions (42 total), top 25:

LigandActionAffinityParameter
RS 100235Antagonist12.2pKi
GR 125487Antagonist10.7pKi
SB 204070Antagonist10.41pKi
piboserodAntagonist10.4pKi
GR 113808Antagonist10.3pKi
SB 207710Antagonist10.3pKi
[3H]GR 113808Antagonist10.3pKd
[123I]SB 207710Antagonist10.07pKd
ML 10375Antagonist10.0pKi
PF-04995274Partial agonist9.82pKi
[3H]RS 57639Antagonist9.7pKd
RS 116 0086Inverse agonist9.5pKi
TD-8954Agonist9.4pKi
RO 116 1148Inverse agonist9.3pKi
capeserodPartial agonist9.2pKi
ML 10302Partial agonist9.0pKi
RS 57639Partial agonist8.9pKi
SB 203186Antagonist8.9pKi
RS67506Agonist8.8pEC50
RS 67333Partial agonist8.7pKi
RS 39604Antagonist8.7pKi
[11C]SB207145Antagonist8.6pKd
prucalopridePartial agonist8.6pKi
tegaserodPartial agonist8.4pKi
BIMU 1Full agonist8.4pKi

Binding affinities (BindingDB)

137 measured of 143 human assays (154 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
4-amino-5-chloro-N-[[2-(1H-indol-3-ylmethyl)piperidin-4-yl]methyl]-2-methoxybenzamideIC500.002 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-N-[[1-(5-indol-1-ylpentyl)piperidin-4-yl]methyl]-2-methoxybenzamideIC500.005 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-N-[[1-(3-indol-1-ylpropyl)piperidin-4-yl]methyl]-2-methoxybenzamideIC500.039 nMUS-9221790: Benzamide derivatives
SB207710KI0.05 nM
4-amino-5-chloro-2-methoxy-N-[[1-[3-(triazol-1-yl)propyl]piperidin-4-yl]methyl]benzamideIC500.067 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-2-methoxy-N-[[1-[(1-methylindol-3-yl)methyl]piperidin-4-yl]methyl]benzamideIC500.076 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-2-methoxy-N-[[1-[5-(triazol-1-yl)pentyl]piperidin-4-yl]methyl]benzamideIC500.103 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-N-[[1-[(4-fluorophenyl)methyl]piperidin-4-yl]methyl]-2-methoxybenzamideIC500.134 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-2-methoxy-N-[[1-[3-(tetrazol-1-yl)propyl]piperidin-4-yl]methyl]benzamideIC500.164 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-2-methoxy-N-[[1-[3-(triazol-2-yl)propyl]piperidin-4-yl]methyl]benzamideIC500.182 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-2-methoxy-N-[[1-[3-(1,2,4-triazol-1-yl)propyl]piperidin-4-yl]methyl]benzamideIC500.226 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-2-methoxy-N-[[1-[3-(2-methylimidazol-1-yl)propyl]piperidin-4-yl]methyl]benzamideIC500.229 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-2-methoxy-N-[[1-(pyridin-3-ylmethyl)piperidin-4-yl]methyl]benzamideIC500.267 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-N-[[1-[(4-hydroxyphenyl)methyl]piperidin-4-yl]methyl]-2-methoxybenzamideIC500.375 nMUS-9221790: Benzamide derivatives
ML10375KI0.41 nM
4-amino-5-chloro-2-methoxy-N-[[1-[(1-methylpyrrol-2-yl)methyl]piperidin-4-yl]methyl]benzamideIC500.421 nMUS-9221790: Benzamide derivatives
4-amino-5-chloro-N-[[1-(1H-imidazol-2-ylmethyl)piperidin-4-yl]methyl]-2-methoxybenzamideIC500.454 nMUS-9221790: Benzamide derivatives
CHEMBL2059582KI0.794 nM
[1-(cyclohexylmethyl)piperidin-4-yl]methyl 4-amino-5-chloro-2-methoxybenzoateKI0.9 nMUS-9663465: Acetylcholinesterase inhibitors and promnesiant serotonin 5-HT4 receptor agonists, their methods of preparation and the pharmaceutical compositions containing the same
CHEMBL2059578KI1 nM
CHEMBL2059580KI1 nM
14C-5-hydroxy tryptamine creatinine disulfateKI1.2 nM
6-Chloro-8-[5-(1-cyclobutyl-piperidin-4-yl)-[1,3,4]oxadiazol-2-yl]-chroman-5-ylamineEC501.3 nMUS-9636335: Heteroaryl compounds as 5-HT4 receptor ligands
CAS_135938-17-9KI1.3 nM
CHEMBL2059584KI1.58 nM
CHEMBL3329226KI1.6 nM
ML10302 scaffold, 9{b;w}KI2 nM
CHEMBL2059577KI2 nM
6-Chloro-8-[5-(1-cyclopentyl-piperidin-4-yl)-[1,3,4]oxadiazol-2-yl]-chroman-5-ylamineEC502.3 nMUS-9636335: Heteroaryl compounds as 5-HT4 receptor ligands
4-amino-5-chloro-[[1-(cyclohexylmethyl)-4-piperidyl]methyl]-2-methoxybenzamideKI2.3 nMUS-9663465: Acetylcholinesterase inhibitors and promnesiant serotonin 5-HT4 receptor agonists, their methods of preparation and the pharmaceutical compositions containing the same
6-Chloro-8-{5-[1-(3-methyl-butyl)-piperidin-4-yl]-[1,3,4]oxadiazol-2-yl}-chroman-5-ylamineEC502.4 nMUS-9636335: Heteroaryl compounds as 5-HT4 receptor ligands
1-(4-amino-5-chloro-2-methoxyphenyl)-3-[1-[(piperidin-4-yl)methyl]-4-piperidyl] propan-1-oneKI2.5 nMUS-9663465: Acetylcholinesterase inhibitors and promnesiant serotonin 5-HT4 receptor agonists, their methods of preparation and the pharmaceutical compositions containing the same
1-[4-amino-5-chloro-2-(2-fluoroéthoxy)phenyl]-3-[1-(cyclohexylmethyl)-4-piperidyl]propan-1-oneKI2.5 nMUS-9663465: Acetylcholinesterase inhibitors and promnesiant serotonin 5-HT4 receptor agonists, their methods of preparation and the pharmaceutical compositions containing the same
CHEMBL2059583KI2.51 nM
CHEMBL2059586KI2.51 nM
CHEMBL2059588KI2.51 nM
1-(4-amino-5-chloro-2-methoxyphenyl)-3-[1-(cyclopentylmethyl)piperidin-4-yl]propan-1-oneKI3 nMUS-9663465: Acetylcholinesterase inhibitors and promnesiant serotonin 5-HT4 receptor agonists, their methods of preparation and the pharmaceutical compositions containing the same
1-(4-amino-5-fluoro-2-methoxyphenyl)-3-[1-(cyclohexylmethyl)-4-piperidyl]propan-1-oneKI3.8 nMUS-9663465: Acetylcholinesterase inhibitors and promnesiant serotonin 5-HT4 receptor agonists, their methods of preparation and the pharmaceutical compositions containing the same
1-(4-amino-5-chloro-2-methoxyphenyl)-3-[1-(cycloheptylmethyl)piperidin-4-yl]propan-1-oneKI3.9 nMUS-9663465: Acetylcholinesterase inhibitors and promnesiant serotonin 5-HT4 receptor agonists, their methods of preparation and the pharmaceutical compositions containing the same
CHEMBL2059579KI3.98 nM
CHEMBL2059585KI3.98 nM
CHEMBL2059581KI3.98 nM
ML10302 scaffold, 9{a;y}EC504 nM
6-Chloro-8-[5-(3-cyclobutyl-3-aza bicyclo[3.1.0]hex-6-yl)-[1,3,4]oxadiazol-2-yl]chroman-5-ylamineEC504.2 nMUS-9636335: Heteroaryl compounds as 5-HT4 receptor ligands
ML10302 scaffold, 9{a;q}KI5 nM
4-[5-(4-Amino-5-chloro-2,3-dihydro-benzofuran-7-yl)-[1,3,4]oxadiazol-2-yl]-[1,4′]bipiperidinyl-1′-carboxylicacid ethyl esterEC505 nMUS-9636335: Heteroaryl compounds as 5-HT4 receptor ligands
4-amino-5-bromo-N-[[1-(cyclohexylmethyl)-4-piperidyl]methyl]-2-methoxybenzamideKI5.4 nMUS-9663465: Acetylcholinesterase inhibitors and promnesiant serotonin 5-HT4 receptor agonists, their methods of preparation and the pharmaceutical compositions containing the same
6-Chloro-8-[5-(1-cyclobutylmethyl-piperidin-4-yl)-[1,3,4]oxadiazol-2-yl]-chroman-5-ylamineEC505.7 nMUS-9636335: Heteroaryl compounds as 5-HT4 receptor ligands
6-Chloro-8-{5-[1-(tetrahydro-pyran-4-yl)-piperidin-4-yl]-[1,3,4]oxadiazol-2-yl}-chroman-5-ylamineEC505.7 nMUS-9636335: Heteroaryl compounds as 5-HT4 receptor ligands
6-Chloro-8-[5-(1-cyclobutylmethyl-piperidin-4-yl)-[1,3,4]oxadiazol-2-yl]-2,3-dihydro-benzo[1,4]dioxin-5-ylamineEC506.2 nMUS-9636335: Heteroaryl compounds as 5-HT4 receptor ligands

ChEMBL bioactivities

1094 potent at pChembl≥5 of 1099 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.80Ki0.01585nMCHEMBL180835
10.80Ki0.01585nMCHEMBL68131
10.60Ki0.02512nMCHEMBL361118
10.60Ki0.02512nMCHEMBL181202
10.50Ki0.03162nMCHEMBL367354
10.50Ki0.03162nMCHEMBL181126
10.50Ki0.03162nMCHEMBL182999
10.41IC500.039nMCHEMBL3967117
10.40Ki0.03981nMCHEMBL2181170
10.40Ki0.04nMCHEMBL2181170
10.40Ki0.03981nMCHEMBL33884
10.37Ki0.04266nMCHEMBL1632165
10.30Ki0.05012nMCHEMBL2440460
10.30Ki0.05012nMCHEMBL424790
10.30Ki0.05012nMCHEMBL180680
10.30Ki0.05012nMCHEMBL3329805
10.28Ki0.05248nMPIBOSEROD
10.27Ki0.0537nMCHEMBL1632163
10.20Ki0.0631nMCHEMBL2440457
10.20Ki0.0631nMCHEMBL180201
10.19Ki0.06457nMCHEMBL1632169
10.17IC500.067nMDA-6886
10.15EC500.07nMCHEMBL6171570
10.13Ki0.07413nMCHEMBL33884
10.12IC500.076nMCHEMBL3934371
10.11Ki0.078nMCHEMBL33884
10.10Ki0.07943nMCHEMBL2177130
10.10Ki0.07943nMCHEMBL360449
10.10Ki0.07943nMCHEMBL3329814
10.00Ki0.1nMCHEMBL2179697
10.00Ki0.1nMPIBOSEROD
10.00Ki0.1nMCHEMBL180830
10.00Ki0.1nMCHEMBL360245
10.00EC500.1nMCHEMBL4215329
10.00Ki0.1nMCHEMBL33884
9.99IC500.103nMCHEMBL3926377
9.99Ki0.1023nMCHEMBL1632157
9.97Ki0.1072nMCHEMBL1632158
9.96Ki0.11nMCHEMBL3093186
9.90Ki0.1259nMCHEMBL2391994
9.90Ki0.1259nMCHEMBL179833
9.90Ki0.1259nMCHEMBL178285
9.90Ki0.1259nMCHEMBL178669
9.87IC500.134nMCHEMBL3890747
9.85Ki0.1413nMCHEMBL1632167
9.82Ki0.15nMPF-04995274
9.80Ki0.1585nMCHEMBL2179699
9.80Ki0.1585nMPIBOSEROD
9.80Ki0.1585nMCHEMBL181415
9.80Ki0.1585nMCHEMBL180697

PubChem BioAssay actives

941 with measured affinity, of 2064 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
[1-[2-(methanesulfonamido)ethyl]piperidin-4-yl]methyl 1-methylindole-3-carboxylate754104: Displacement of [3H]GR113808 from human 5-HT4B receptor expressed in HEK293 cells after 1 hr by liquid scintillation counting analysiski<0.0001uM
(1-butylpiperidin-4-yl)methyl 5-amino-6-chloro-2,3-dihydro-1,4-benzodioxine-8-carboxylate416400: Binding affinity at 5HT4 receptorki<0.0001uM
N-[[1-[3-(4-butan-2-ylpiperazin-1-yl)sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki<0.0001uM
benzyl 5-[4-[(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonylamino)methyl]piperidin-1-yl]pentanoate548651: Displacement of [3H]GR113808 from human 5HT4 receptor expressed in HEK293 cells by liquid scintillation countingki<0.0001uM
benzyl 4-[4-[(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonylamino)methyl]piperidin-1-yl]butanoate548651: Displacement of [3H]GR113808 from human 5HT4 receptor expressed in HEK293 cells by liquid scintillation countingki<0.0001uM
7-fluoro-5-[(1-propylpiperidin-4-yl)methoxy]benzo[h][1,6]naphthyridine1057029: Binding affinity to human 5HT4Rki<0.0001uM
methanesulfonic acid;[1-[[4-(2-methoxycarbonylphenyl)phenyl]methyl]piperidin-4-yl]methyl 3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carboxylate781013: Displacement of [3H]GR113808 from human 5HT4B receptor expressed in HEK293 cellski<0.0001uM
N-[[1-[3-(4-propylpiperazin-1-yl)sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki<0.0001uM
N-[[1-[3-[4-(4-fluorophenyl)sulfonylpiperazin-1-yl]sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki<0.0001uM
N-[[1-[3-(4-propan-2-ylpiperazin-1-yl)sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki<0.0001uM
N-[[1-[3-(8-azaspiro[4.5]decan-8-ylsulfonyl)propyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki<0.0001uM
N-[[1-[3-(4-cyclopentylpiperazin-1-yl)sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki<0.0001uM
N-[[1-[[4-(2-methylpropylsulfonylamino)phenyl]methyl]piperidin-4-yl]methyl]-3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carboxamide1160988: Displacement of [3H]GR113808 from human 5HT4b receptor expressed in HEK293 cell membraneski0.0001uM
N-[[1-(oxan-4-ylmethyl)piperidin-4-yl]methyl]-2-propan-2-ylpyrazolo[1,5-a]pyridine-7-carboxamide1375752: Agonist activity at recombinant human 5-HT4E receptor expressed in CHO cells assessed as induction of c-AMP accumulation after 4 hrs by luciferase reporter assayec500.0001uM
N-[[1-[3-(4-propylsulfonylpiperazin-1-yl)sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0001uM
N-[(1-butylpiperidin-4-yl)methyl]-3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carboxamide548651: Displacement of [3H]GR113808 from human 5HT4 receptor expressed in HEK293 cells by liquid scintillation countingki0.0001uM
1-propan-2-yl-N-[[1-(2-pyridin-2-ylethyl)piperidin-4-yl]methyl]indazole-3-carboxamide;hydrochloride707296: Displacement of 3Hmethyl 1-methyl-1H-indole-3-carboxylate from human 5HT4R expressed in HEK293 cellski0.0001uM
N-[[1-[3-(4-acetylpiperazin-1-yl)sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0001uM
N-[[1-[3-[4-(furan-2-carbonyl)piperazin-1-yl]sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0001uM
N-[[1-[3-(4-pyrrolidin-1-ylsulfonylpiperazin-1-yl)sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0001uM
N-[[1-[3-(4,4-dimethylpiperidin-1-yl)sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0001uM
N-[[1-[3-(4-propan-2-ylsulfonylpiperazin-1-yl)sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0001uM
methyl 2-[4-[[4-[(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonylamino)methyl]piperidin-1-yl]methyl]phenyl]benzoate781013: Displacement of [3H]GR113808 from human 5HT4B receptor expressed in HEK293 cellski0.0001uM
2-[4-[[4-(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonyloxymethyl)piperidin-1-yl]methyl]phenyl]-2-methylpropanoic acid754104: Displacement of [3H]GR113808 from human 5-HT4B receptor expressed in HEK293 cells after 1 hr by liquid scintillation counting analysiski0.0001uM
2,2-dimethylpropanoyloxymethyl 6-[4-[(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonylamino)methyl]piperidin-1-yl]hexanoate548651: Displacement of [3H]GR113808 from human 5HT4 receptor expressed in HEK293 cells by liquid scintillation countingki0.0001uM
benzyl 6-[4-[(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonylamino)methyl]piperidin-1-yl]hexanoate548651: Displacement of [3H]GR113808 from human 5HT4 receptor expressed in HEK293 cells by liquid scintillation countingki0.0001uM
tert-butyl 6-[4-[(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonylamino)methyl]piperidin-1-yl]hexanoate548651: Displacement of [3H]GR113808 from human 5HT4 receptor expressed in HEK293 cells by liquid scintillation countingki0.0001uM
methyl 6-[4-[(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonylamino)methyl]piperidin-1-yl]hexanoate548651: Displacement of [3H]GR113808 from human 5HT4 receptor expressed in HEK293 cells by liquid scintillation countingki0.0001uM
ethyl 4-[4-[(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonylamino)methyl]piperidin-1-yl]butanoate548651: Displacement of [3H]GR113808 from human 5HT4 receptor expressed in HEK293 cells by liquid scintillation countingki0.0001uM
4-[[4-[[4-[(3R)-oxolan-3-yl]oxy-1,2-benzoxazol-3-yl]oxymethyl]piperidin-1-yl]methyl]oxan-4-ol706253: Displacement of [3H]GR113808 from human 5HT4D receptor expressed in HEK293 cells after 30 mins by liquid scintillation countingki0.0001uM
2-[4-[[4-(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonyloxymethyl)piperidin-1-yl]methyl]phenyl]benzoic acid;methanesulfonic acid781013: Displacement of [3H]GR113808 from human 5HT4B receptor expressed in HEK293 cellski0.0001uM
7-fluoro-5-[[1-(3,3,3-trifluoropropyl)piperidin-4-yl]methoxy]benzo[h][1,6]naphthyridine1057029: Binding affinity to human 5HT4Rki0.0001uM
[1-(2,3-dihydroxypropyl)piperidin-4-yl]methyl 3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carboxylate1160988: Displacement of [3H]GR113808 from human 5HT4b receptor expressed in HEK293 cell membraneski0.0001uM
N-[[1-[3-[4-(4-fluorophenyl)piperazin-1-yl]sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0001uM
N-[[1-[3-(4-ethylpiperazin-1-yl)sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0001uM
N-[[1-[3-(4-propylpiperidin-1-yl)sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0001uM
N-[[1-(2-phenylethyl)piperidin-4-yl]methyl]-1-propan-2-ylindazole-3-carboxamide;hydrochloride707296: Displacement of 3Hmethyl 1-methyl-1H-indole-3-carboxylate from human 5HT4R expressed in HEK293 cellski0.0001uM
N-[[1-(3-piperazin-1-ylsulfonylpropyl)piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0002uM
N-[[1-[2-(4-aminophenyl)ethyl]piperidin-4-yl]methyl]-1-propan-2-ylindazole-3-carboxamide;dihydrochloride707296: Displacement of 3Hmethyl 1-methyl-1H-indole-3-carboxylate from human 5HT4R expressed in HEK293 cellski0.0002uM
N-[[1-[[4-(methanesulfonamido)phenyl]methyl]piperidin-4-yl]methyl]-3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carboxamide1160988: Displacement of [3H]GR113808 from human 5HT4b receptor expressed in HEK293 cell membraneski0.0002uM
N-[[1-[[4-(cyclohexylsulfonylamino)phenyl]methyl]piperidin-4-yl]methyl]-3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carboxamide1160988: Displacement of [3H]GR113808 from human 5HT4b receptor expressed in HEK293 cell membraneski0.0002uM
N-[[1-[[4-(methanesulfonamido)phenyl]methyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide1160988: Displacement of [3H]GR113808 from human 5HT4b receptor expressed in HEK293 cell membraneski0.0002uM
N-[[1-[[4-(2-methylpropylsulfonylamino)phenyl]methyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide1160988: Displacement of [3H]GR113808 from human 5HT4b receptor expressed in HEK293 cell membraneski0.0002uM
N-[[1-(2-cyclohexylethyl)piperidin-4-yl]methyl]-1-propan-2-ylindazole-3-carboxamide;hydrochloride707296: Displacement of 3Hmethyl 1-methyl-1H-indole-3-carboxylate from human 5HT4R expressed in HEK293 cellski0.0002uM
(4-oxo-2-azatricyclo[3.3.1.02,7]nonan-8-yl) 1H-indole-3-carboxylate200911: Potency was evaluated on rabbit heart serotonergic receptorskd0.0002uM
N-[[1-(3-piperidin-1-ylsulfonylpropyl)piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0002uM
N-[[1-[3-[4-(pyridin-3-ylmethyl)piperazin-1-yl]sulfonylpropyl]piperidin-4-yl]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide239909: Inhibitory constant for human cloned 5-HT4 receptorki0.0002uM
(1-butylpiperidin-4-yl)methyl 4-amino-2-methoxybenzoate517043: Agonist activity at 5HT4 receptor expressed in HEK293/L9 cells by cAMP assayec500.0002uM
methyl 10-[4-[(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonylamino)methyl]piperidin-1-yl]decanoate548651: Displacement of [3H]GR113808 from human 5HT4 receptor expressed in HEK293 cells by liquid scintillation countingki0.0002uM
tert-butyl 4-[4-[(3,4-dihydro-2H-[1,3]oxazino[3,2-a]indole-10-carbonylamino)methyl]piperidin-1-yl]butanoate548651: Displacement of [3H]GR113808 from human 5HT4 receptor expressed in HEK293 cells by liquid scintillation countingki0.0002uM

CTD chemical–gene interactions

19 total (human), top 19 by PubMed support.

ChemicalActions (top 5)PubMed papers
tegaserodaffects binding, increases activity2
Valproic Aciddecreases methylation, increases expression2
psilocinincreases response to substance, increases phosphorylation, increases activity1
sodium arseniteaffects methylation1
GR 113808affects binding1
CGP 52608affects binding, increases reaction1
2-piperidinoethyl 4-amino-5-chloro-2-methoxybenzoateaffects binding, increases activity1
bazedoxifeneincreases expression1
Zoledronic Acidincreases expression1
Benzo(a)pyrenedecreases methylation, increases methylation, affects methylation1
Etoposideaffects response to substance1
Lipopolysaccharidesincreases secretion, increases reaction, decreases reaction1
Piperazinesaffects binding, decreases activity1
Psilocybinincreases phosphorylation, increases activity, increases response to substance1
Seleniumincreases expression1
Silicon Dioxidedecreases expression1
Testosteronedecreases expression1
Aflatoxin B1decreases methylation1
Cadmium Chlorideincreases expression1

ChEMBL screening assays

349 unique, capped per target: 233 binding, 113 functional, 2 admet, 1 unclassified

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1000204BindingBinding affinity to 5HT4e receptorSynthesis and evaluation of dibenzothiazepines: a novel class of selective cannabinoid-1 receptor inverse agonists. — J Med Chem
CHEMBL1048160FunctionalAgonist activity at human recombinant 5-HT4 receptormu-Opioid/5-HT4 dual pharmacologically active agents-efforts towards an effective opioid analgesic with less GI and respiratory side effects (Part I). — Bioorg Med Chem Lett
CHEMBL1738126UnclassifiedPUBCHEM_BIOASSAY: Late-stage radioligand binding dose response assay to identify inhibitors of NADPH oxidase 1 (NOX1): PDSP screen Ki. (Class of assay: screening) [Related pubchem assays (depositor defined):AID1792, AID1796, AID1823, AID253PubChem BioAssay data set

Cellosaurus cell lines

3 cell lines: 1 transformed cell line, 1 cancer cell line, 1 spontaneously immortalized cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_C0SZACTOne HTR4Transformed cell lineFemale
CVCL_D7RLUbigene A-549 HTR4 KOCancer cell lineMale
CVCL_H382CHO-K1/5-HT4/Galpha15Spontaneously immortalized cell lineFemale

Clinical trials (associated diseases)

214 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT02399566PHASE4UNKNOWNClinical Trial of Erlotinib and Pemetrexed for Maintenance Treatment in Lung Adenocarcinoma
NCT02804646PHASE4UNKNOWNEndostar Durative Transfusion Combined With Chemotherapy in the Treatment of Advanced Lung Adenocarcinoma
NCT00002852PHASE3COMPLETEDSurgery With or Without Chemotherapy in Treating Patients With Stage I Non-small Cell Lung Cancer
NCT00005838PHASE3COMPLETEDCombination Chemotherapy Plus Radiation Therapy With or Without AE-941 in Treating Patients With Stage III Non-small Cell Lung Cancer That Cannot Be Removed By Surgery
NCT00020709PHASE3COMPLETEDCombination Chemotherapy and Radiation Therapy With or Without Gefitinib in Treating Patients With Stage III Non-Small Cell Lung Cancer That Cannot Be Removed By Surgery
NCT00049543PHASE3COMPLETEDGefitinib in Treating Patients With Stage IB, II, or IIIA Non-small Cell Lung Cancer That Was Completely Removed by Surgery
NCT00946712PHASE3TERMINATEDS0819: Carboplatin and Paclitaxel With or Without Bevacizumab and/or Cetuximab in Treating Patients With Stage IV or Recurrent Non-Small Cell Lung Cancer
NCT01798485PHASE3TERMINATEDA Phase 3 Study of Ganetespib in Combination With Docetaxel Versus Docetaxel Alone in Patients With Advanced NSCLC
NCT02011997PHASE3UNKNOWNComparison of cVATS Segmentectomy Versus Lobectomy for Lung Adenocarcinoma in Situ and With Microinvasion
NCT03391869PHASE3ACTIVE_NOT_RECRUITINGNivolumab and Ipilimumab With or Without Local Consolidation Therapy in Treating Patients With Stage IV Non-Small Cell Lung Cancer
NCT03676192PHASE3COMPLETEDTo Compare Efficacy and Safety of CT-P16 and European Union-Approved Avastin as First-Line Treatment for Metastatic or Recurrent Non-Squamous Non-Small Cell Lung Cancer
NCT04339218PHASE3RECRUITINGCryoablation in Combination (or Not) With Pembrolizumab and Pemetrexed-carboplatin in 1st-line Treatment for Patients With Metastatic Lung Adenocarcinoma
NCT05204758PHASE3COMPLETEDProphylactic TCM for Mitigation of EGFR-TKI Related Dermatological Adverse Effect
NCT05717803PHASE3RECRUITINGSegmentectomy for Ground Glass-dominant Invasive Lung Cancer (ECTOP-1012)
NCT05943795PHASE3ACTIVE_NOT_RECRUITINGA Clinical Study of SI-B001 Combined With Docetaxel in the Treatment of Non-small Cell Lung Adenocarcinoma and Lung Squamous Cell Carcinoma
NCT06031181PHASE3RECRUITINGSublobar Resection for Adenocarcinoma in Situ/Minimally Invasive Adenocarcinoma Diagnosed by Intraoperative Frozen Section (ECTOP-1019)
NCT06031246PHASE3RECRUITINGSelective Lymph Node Dissection for cT1N0M0 Invasive NSCLC With CTR>0.5 Located in the Apical Segment (ECTOP-1018)
NCT06634966PHASE3RECRUITINGSegmentectomy for Solid-dominant Lung Cancer
NCT07169903PHASE3NOT_YET_RECRUITINGSegmentectomy vs Lobectomy for 2 - 3cm IASLC Grade 1-2 Lung Adenocarcinoma: A Multi-center RCT
NCT07481786PHASE3RECRUITINGBevacizumab Plus FSRT Versus Hippocampus-Avoidant WBRT in Lung Adenocarcinoma With Extensive Brain Metastases
NCT00040794PHASE2COMPLETEDCombination Chemotherapy, Radiation Therapy, and Gefitinib in Treating Patients With Stage III Non-Small Cell Lung Cancer
NCT00087412PHASE2COMPLETEDS0341: Erlotinib in Treating Patients With Advanced Primary Non-Small Cell Lung Cancer
NCT00118144PHASE2COMPLETEDBortezomib in Treating Patients With Stage IIIB or Stage IV Lung Cancer
NCT00118183PHASE2COMPLETEDDocetaxel With Either Cetuximab or Bortezomib as First-Line Therapy in Treating Patients With Stage III or Stage IV Non-Small Cell Lung Cancer
NCT00126581PHASE2COMPLETEDErlotinib Hydrochloride With or Without Carboplatin and Paclitaxel in Treating Patients With Stage III-IV Non-small Cell Lung Cancer
NCT00334815PHASE2ACTIVE_NOT_RECRUITINGCombination Chemotherapy, Radiation Therapy, and Bevacizumab in Treating Patients With Newly Diagnosed Stage III Non-small Cell Lung Cancer That Cannot Be Removed by Surgery
NCT00368992PHASE2COMPLETEDS0536: Cetuximab, Paclitaxel, Carboplatin, and Bevacizumab in Treating Patients With Advanced Non-Small Cell Lung Cancer
NCT00511485PHASE2COMPLETEDStudy of Vintafolide (MK-8109, EC145) in Participants With Progressive Adenocarcinoma of the Lung (MK-8109-008, EC-FV-03)
NCT00950365PHASE2COMPLETEDPemetrexed Disodium With or Without Erlotinib Hydrochloride in Treating Patients With Stage IIIB-IV or Recurrent Non-Small Cell Lung Cancer
NCT00955305PHASE2TERMINATEDPaclitaxel, Carboplatin, and Bevacizumab With or Without Cixutumumab in Treating Patients With Stage IV or Recurrent Non-small Cell Lung Cancer
NCT01218516PHASE2COMPLETEDA Safety and Efficacy Study of Farletuzumab in Participants With Adenocarcinoma of the Lung
NCT01294306PHASE2COMPLETEDMK2206 and Erlotinib Hydrochloride in Treating Patients With Advanced Non-Small Cell Lung Cancer Who Have Progressed After Previous Response to Erlotinib Hydrochloride Therapy
NCT01557959PHASE2COMPLETEDDocetaxel, Cisplatin, Pegfilgrastim, and Erlotinib Hydrochloride in Treating Patients With Stage IIIB or Stage IV Non-Small Cell Lung Cancer
NCT01561456PHASE2COMPLETEDStudy of AXL1717 Compared to Docetaxel to Treat Squamous Cell Carcinoma or Adenocarcinoma of the Lung
NCT01578551PHASE2TERMINATEDStudy of Metformin Plus Paclitaxel/Carboplatin/Bevacizumab in Patients With Adenocarcinoma.
NCT01578668PHASE2COMPLETEDErlotinib Plus Pemetrexed to Treat Lung Adenocarcinoma With Brain Metastases
NCT01819428PHASE2TERMINATEDNOV120101 (Poziotinib) for 1st Line Monotherapy in Patients With Lung Adenocarcinoma
NCT01935336PHASE2COMPLETEDStudy of Ponatinib in Patients With Lung Cancer Preselected Using Different Candidate Predictive Biomarkers
NCT02134912PHASE2TERMINATEDS1300: Pemetrexed Disodium With or Without Crizotinib in Treating Patients With Stage IV Non-Small Cell Lung Cancer That Has Progressed After Crizotinib
NCT02186847PHASE2COMPLETEDChemotherapy and Radiation Therapy With or Without Metformin Hydrochloride in Treating Patients With Stage III Non-small Cell Lung Cancer