IFI35
gene geneOn this page
Also known as IFP35
Summary
IFI35 (interferon induced protein 35, HGNC:5399) is a protein-coding gene on chromosome 17q21.31, encoding Interferon-induced 35 kDa protein (P80217). Acts as a signaling pathway regulator involved in innate immune system response.
Enables identical protein binding activity. Involved in several processes, including macrophage activation involved in immune response; negative regulation of non-canonical NF-kappaB signal transduction; and positive regulation of defense response. Located in several cellular components, including cytosol; extracellular space; and nuclear lumen.
Source: NCBI Gene 3430 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 61 total
- MANE Select transcript:
NM_001330230
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:5399 |
| Approved symbol | IFI35 |
| Name | interferon induced protein 35 |
| Location | 17q21.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | IFP35 |
| Ensembl gene | ENSG00000068079 |
| Ensembl biotype | protein_coding |
| OMIM | 600735 |
| Entrez | 3430 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 5 retained_intron, 2 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000246911, ENST00000396722, ENST00000415816, ENST00000438323, ENST00000534876, ENST00000536969, ENST00000538473, ENST00000546325
RefSeq mRNA: 2 — MANE Select: NM_001330230
NM_001330230, NM_005533
CCDS: CCDS11450, CCDS82134
Canonical transcript exons
ENST00000415816 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000727548 | 43013776 | 43013882 |
| ENSE00001288037 | 43013476 | 43013662 |
| ENSE00002253201 | 43006784 | 43006968 |
| ENSE00003484492 | 43013267 | 43013373 |
| ENSE00003512509 | 43012179 | 43012277 |
| ENSE00003576323 | 43013047 | 43013194 |
| ENSE00003900407 | 43014108 | 43014456 |
Expression profiles
Bgee: expression breadth ubiquitous, 241 present calls, max score 96.81.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 19.0161 / max 359.3059, expressed in 1733 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 161042 | 15.3829 | 1717 |
| 161043 | 3.3794 | 939 |
| 161044 | 0.1524 | 62 |
| 161045 | 0.1014 | 47 |
Top tissues by expression
285 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| granulocyte | CL:0000094 | 96.81 | gold quality |
| monocyte | CL:0000576 | 96.43 | gold quality |
| mononuclear cell | CL:0000842 | 96.26 | gold quality |
| leukocyte | CL:0000738 | 96.13 | gold quality |
| decidua | UBERON:0002450 | 95.12 | gold quality |
| right adrenal gland | UBERON:0001233 | 94.92 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 94.30 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 94.14 | gold quality |
| left adrenal gland | UBERON:0001234 | 94.13 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 93.73 | gold quality |
| apex of heart | UBERON:0002098 | 93.68 | gold quality |
| adrenal cortex | UBERON:0001235 | 92.73 | gold quality |
| spleen | UBERON:0002106 | 92.68 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 92.57 | gold quality |
| gall bladder | UBERON:0002110 | 92.31 | gold quality |
| adrenal gland | UBERON:0002369 | 91.96 | gold quality |
| transverse colon | UBERON:0001157 | 91.54 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 91.52 | gold quality |
| tibial nerve | UBERON:0001323 | 91.48 | gold quality |
| omental fat pad | UBERON:0010414 | 91.29 | gold quality |
| peritoneum | UBERON:0002358 | 91.24 | gold quality |
| small intestine | UBERON:0002108 | 91.07 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 91.05 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 90.96 | gold quality |
| mucosa of stomach | UBERON:0001199 | 90.88 | gold quality |
| blood | UBERON:0000178 | 90.84 | gold quality |
| right ovary | UBERON:0002118 | 90.80 | gold quality |
| vermiform appendix | UBERON:0001154 | 90.74 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 90.74 | gold quality |
| left ovary | UBERON:0002119 | 90.73 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-114 | yes | 165.66 |
| E-HCAD-13 | yes | 13.20 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR, IRF1, IRF2, STAT1
miRNA regulators (miRDB)
17 targeting IFI35, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-450B-5P | 99.92 | 71.48 | 3175 |
| HSA-MIR-1255A | 99.74 | 68.09 | 744 |
| HSA-MIR-1255B-5P | 99.74 | 68.16 | 741 |
| HSA-MIR-7106-5P | 99.53 | 67.47 | 3574 |
| HSA-MIR-19A-5P | 99.36 | 66.93 | 1675 |
| HSA-MIR-19B-1-5P | 99.36 | 67.07 | 1669 |
| HSA-MIR-19B-2-5P | 99.36 | 67.07 | 1669 |
| HSA-MIR-589-5P | 98.72 | 66.96 | 927 |
| HSA-MIR-3187-5P | 98.36 | 65.74 | 1776 |
| HSA-MIR-3155A | 98.16 | 66.09 | 965 |
| HSA-MIR-3155B | 98.16 | 66.09 | 965 |
| HSA-MIR-484 | 98.16 | 66.92 | 1074 |
| HSA-MIR-1285-3P | 97.72 | 67.02 | 1932 |
| HSA-MIR-5189-5P | 97.72 | 66.96 | 1814 |
| HSA-MIR-612 | 97.26 | 65.95 | 1597 |
| HSA-MIR-6860 | 97.21 | 66.31 | 1656 |
Literature-anchored findings (GeneRIF, showing 14)
- Dissociation of the IFN-induced protein IFP35 from NMI is a newly defined specific cytoplasmic event occurring during apoptosis. (PMID:11911807)
- The results provide a novel role of CKIP-1 in cytokine signaling response and the biochemical mechanism, by which two previously identified modulators IFP35 and Nmi are involved via interactions. (PMID:17197158)
- IFP35 can interact with the bovine Tas (BTas) regulatory protein of bovine foamy virus; overexpression of IFP35 disturbs the ability of BTas to activate viral-gene transcription and inhibits viral replication. (PMID:18305040)
- IRF-1 also activates IFP35 expression in an IFN-gamma-inducible manner. (PMID:23226549)
- IFI35 negatively regulates RIG-I antiviral signaling and supports vesicular stomatitis virus replication. (PMID:24371060)
- Knockdown of IFP35 expression abolished pEGFP-N1-2C and pEGFP-N1-Nmi-induced activation of type I interferon promoters. (PMID:25085622)
- Trim21 regulates Nmi-IFI35 complex-mediated inhibition of innate antiviral response (PMID:26342464)
- Activation of TLR3 by poly IC induces the IFI35 expression in Mesangial Cells. Regional expression of IFI35 and its dysregulation may be involved in the pathogenesis of glomerular inflammation in CKD. (PMID:27639618)
- IFI35 enhances proliferation of mesangial cells and is regulated by MBD2 in lupus nephritis. (PMID:28064541)
- Study found that TLR3 signaling induces the expression of IFI35, and IFI35 negatively regulates IFN-beta-P-STAT1-RIG-I-CXCL10/CCL5 axis in U373MG cells. This suggests that IFI35 expressed in astrocytes may play an important role in regulating the innate immune system in astrocytoma cells. (PMID:28109979)
- Damage-associated molecular patterns (DAMP) are important mediators of innate immunity. Here the authors show that N-myc and STAT interactor (NMI) and interferon-induced protein 35 (IFP35) act as DAMPs to promote inflammation by activating macrophages via the Toll-like receptor 4 and NF-kappaB pathways. (PMID:29038465)
- inhibits both endothelial cell proliferation and migration by inhibiting the NF-kappaB/p65 pathway; functionally interacts with Nmi through its NID1 domain (PMID:29350881)
- IFI35 as a biomolecular marker of neuroinflammation and treatment response in multiple sclerosis. (PMID:32781067)
- IFP35 family proteins promote neuroinflammation and multiple sclerosis. (PMID:34362845)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ifi35 | ENSDARG00000075643 |
| mus_musculus | Ifi35 | ENSMUSG00000010358 |
| rattus_norvegicus | Ifi35 | ENSRNOG00000020678 |
Paralogs (2): NMI (ENSG00000123609), RBM43 (ENSG00000184898)
Protein
Protein identifiers
Interferon-induced 35 kDa protein — P80217 (reviewed: P80217)
All UniProt accessions (1): P80217
UniProt curated annotations — full annotation on UniProt →
Function. Acts as a signaling pathway regulator involved in innate immune system response. In response to interferon IFN-alpha, associates in a complex with signaling pathway regulator NMI to regulate immune response; the complex formation prevents proteasome-mediated degradation of IFI35 and correlates with IFI35 dephosphorylation. In complex with NMI, inhibits virus-triggered type I interferon/IFN-beta production. In complex with NMI, negatively regulates nuclear factor NF-kappa-B signaling by inhibiting the nuclear translocation, activation and transcription of the NF-kappa-B subunit p65/RELA, resulting in the inhibition of endothelial cell proliferation, migration and re-endothelialization of injured arteries. Beside its role as an intracellular signaling pathway regulator, also functions extracellularly as damage-associated molecular patterns (DAMPs) to promote inflammation when actively released by macrophage to the extracellular space during cell injury and pathogen invasion. Macrophage-secreted IFI35 activates NF-kappa-B signaling in adjacent macrophages through Toll-like receptor 4/TLR4 activation, thereby inducing NF-kappa-B translocation from the cytoplasm into the nucleus which promotes the release of pro-inflammatory cytokines.
Subunit / interactions. Homodimer. Also interacts with BATF. Interacts with TRIM21. Interacts with NMI; the interaction is direct and is facilitated by TRIM21.
Subcellular location. Cytoplasm. Nucleus. Secreted.
Tissue specificity. Expressed in a wide range of cell types, including fibroblasts, macrophages, and epithelial cells.
Post-translational modifications. Phosphorylated. Dephosphorylation correlates with the formation of a complex with NMI.
Domain organisation. The NID domain 1 is involved in the negative regulation of p65/RELA transcription and the negative regulation of NF-kappa-B pathway activation.
Induction. Up-regulated by interferons IFN-alpha and IFN-gamma.
Miscellaneous. Due to a polymorphism at the 3’-splice acceptor site of intron 4.
Similarity. Belongs to the NMI family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P80217-1 | 1 | yes |
| P80217-2 | 2 |
RefSeq proteins (2): NP_001317159, NP_005524 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR009909 | Nmi/IFP35_dom | Domain |
| IPR009938 | Nmi/IFP35_N | Domain |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Homologous_superfamily |
Pfam: PF07292, PF07334
UniProt features (9 total): domain 2, sequence variant 2, initiator methionine 1, chain 1, region of interest 1, splice variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 21NG | X-RAY DIFFRACTION | 1.53 |
| 21OT | X-RAY DIFFRACTION | 2.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P80217-F1 | 83.45 | 0.48 |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-909733 | Interferon alpha/beta signaling |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-168256 | Immune System |
| R-HSA-913531 | Interferon Signaling |
MSigDB gene sets: 383 (showing top):
JI_RESPONSE_TO_FSH_UP, CHIARADONNA_NEOPLASTIC_TRANSFORMATION_KRAS_DN, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_INFLAMMATORY_RESPONSE, GOBP_MACROPHAGE_ACTIVATION_INVOLVED_IN_IMMUNE_RESPONSE, MODULE_45, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GRAESSMANN_RESPONSE_TO_MC_AND_SERUM_DEPRIVATION_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GOBP_REGULATION_OF_TOLL_LIKE_RECEPTOR_4_SIGNALING_PATHWAY, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION, FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_DN, CHANG_IMMORTALIZED_BY_HPV31_DN, GOBP_CELL_ACTIVATION_INVOLVED_IN_IMMUNE_RESPONSE, GOBP_POSITIVE_REGULATION_OF_RESPONSE_TO_EXTERNAL_STIMULUS
GO Biological Process (10): macrophage activation involved in immune response (GO:0002281), negative regulation of cell population proliferation (GO:0008285), positive regulation of toll-like receptor 4 signaling pathway (GO:0034145), innate immune response (GO:0045087), positive regulation of innate immune response (GO:0045089), positive regulation of inflammatory response (GO:0050729), negative regulation of non-canonical NF-kappaB signal transduction (GO:1901223), positive regulation of non-canonical NF-kappaB signal transduction (GO:1901224), immune system process (GO:0002376), regulation of innate immune response (GO:0045088)
GO Molecular Function (2): identical protein binding (GO:0042802), protein binding (GO:0005515)
GO Cellular Component (8): obsolete extracellular space (GO:0005615), nucleus (GO:0005634), nucleoplasm (GO:0005654), nucleolus (GO:0005730), cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020), extracellular region (GO:0005576)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Interferon Signaling | 1 |
| Immune System | 1 |
| Cytokine Signaling in Immune system | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| immune response | 2 |
| positive regulation of defense response | 2 |
| positive regulation of response to external stimulus | 2 |
| innate immune response | 2 |
| non-canonical NF-kappaB signal transduction | 2 |
| regulation of non-canonical NF-kappaB signal transduction | 2 |
| nuclear lumen | 2 |
| myeloid cell activation involved in immune response | 1 |
| leukocyte activation involved in immune response | 1 |
| macrophage activation | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| toll-like receptor 4 signaling pathway | 1 |
| regulation of toll-like receptor 4 signaling pathway | 1 |
| positive regulation of pattern recognition receptor signaling pathway | 1 |
| defense response to symbiont | 1 |
| positive regulation of response to biotic stimulus | 1 |
| regulation of innate immune response | 1 |
| positive regulation of immune response | 1 |
| inflammatory response | 1 |
| regulation of inflammatory response | 1 |
| negative regulation of intracellular signal transduction | 1 |
| positive regulation of intracellular signal transduction | 1 |
| biological_process | 1 |
| regulation of response to biotic stimulus | 1 |
| regulation of defense response | 1 |
| regulation of response to external stimulus | 1 |
| regulation of immune response | 1 |
| protein binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular membraneless organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
2763 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| IFI35 | IFITM3 | Q01628 | 721 |
| IFI35 | RND2 | P52198 | 716 |
| IFI35 | IRF1 | P10914 | 678 |
| IFI35 | STAT2 | P52630 | 675 |
| IFI35 | IFIT3 | O14879 | 673 |
| IFI35 | IFIT1 | P09914 | 670 |
| IFI35 | NBR1 | Q14596 | 669 |
| IFI35 | PSMB8 | P28062 | 668 |
| IFI35 | IFI44 | Q8TCB0 | 664 |
| IFI35 | IFITM1 | P13164 | 661 |
| IFI35 | IFI6 | P09912 | 655 |
| IFI35 | OAS1 | P00973 | 621 |
| IFI35 | ISG15 | P05161 | 619 |
| IFI35 | IFI27 | P40305 | 619 |
| IFI35 | CREB3 | O43889 | 614 |
IntAct
15 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CLEC4G | IFI35 | psi-mi:“MI:0915”(physical association) | 0.540 |
| IFI35 | CLEC4G | psi-mi:“MI:0915”(physical association) | 0.540 |
| IFI35 | CLEC4G | psi-mi:“MI:0403”(colocalization) | 0.540 |
| PHF19 | EPOP | psi-mi:“MI:0914”(association) | 0.530 |
| FCN1 | IFI35 | psi-mi:“MI:0915”(physical association) | 0.370 |
| IFI35 | KDM1A | psi-mi:“MI:0915”(physical association) | 0.370 |
| IFI35 | TFAP2A | psi-mi:“MI:0915”(physical association) | 0.370 |
| NMI | TARS3 | psi-mi:“MI:0914”(association) | 0.350 |
| IFI35 | CYTH3 | psi-mi:“MI:0914”(association) | 0.350 |
| IFI35 | MAPK1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| IFI35 | PLEKHO1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| CLEC4G | IFI35 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (51): IFI35 (Affinity Capture-MS), TRIM21 (Affinity Capture-MS), TRIM21 (Affinity Capture-Western), NMI (Affinity Capture-Western), IFI35 (Affinity Capture-Western), NMI (Two-hybrid), IFI35 (Affinity Capture-MS), IFI35 (Affinity Capture-Western), IFI35 (Two-hybrid), FHL2 (Two-hybrid), BCAS2 (Two-hybrid), NMI (Two-hybrid), EML2 (Two-hybrid), IFI35 (Two-hybrid), IFI35 (Two-hybrid)
ESM2 similar proteins: A0A1B0GUJ8, A0JPF9, A5A6J9, A6H5X4, B1ARD8, E1C3S7, F6QZ15, G1SRW8, O14862, O14879, O35309, O95256, P0C7P3, P80217, Q13287, Q14B46, Q1LZ50, Q2EMV9, Q2T9U5, Q3B7D9, Q3ZCL3, Q460N5, Q4R7Q1, Q5I0E2, Q5I0J8, Q5RCZ8, Q5XGX5, Q5XIZ9, Q6IEE8, Q6NVF4, Q6ZSC3, Q80VH0, Q8BVM9, Q8C8H8, Q8CAS9, Q8IXQ6, Q8IYM2, Q91VJ1, Q99J64, Q99MV5
Diamond homologs: O35309, P80217, Q13287, Q3ZCL3, Q9D8C4
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
61 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 47 |
| Likely benign | 4 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
953 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:43012176:CAGGC:C | acceptor_loss | 1.0000 |
| 17:43012177:A:AG | acceptor_gain | 1.0000 |
| 17:43012177:AG:A | acceptor_gain | 1.0000 |
| 17:43012178:G:GA | acceptor_gain | 1.0000 |
| 17:43012178:GG:G | acceptor_gain | 1.0000 |
| 17:43012178:GGC:G | acceptor_gain | 1.0000 |
| 17:43012178:GGCC:G | acceptor_gain | 1.0000 |
| 17:43012274:CAAG:C | donor_loss | 1.0000 |
| 17:43012275:AAG:A | donor_loss | 1.0000 |
| 17:43012278:G:GG | donor_gain | 1.0000 |
| 17:43012278:GT:G | donor_loss | 1.0000 |
| 17:43012279:T:G | donor_loss | 1.0000 |
| 17:43013192:AAGGT:A | donor_loss | 1.0000 |
| 17:43013193:AGGT:A | donor_loss | 1.0000 |
| 17:43013194:GGTA:G | donor_loss | 1.0000 |
| 17:43013196:T:G | donor_loss | 1.0000 |
| 17:43013261:A:AG | acceptor_gain | 1.0000 |
| 17:43013262:C:G | acceptor_gain | 1.0000 |
| 17:43013265:A:AG | acceptor_gain | 1.0000 |
| 17:43013265:AGT:A | acceptor_gain | 1.0000 |
| 17:43013265:AGTG:A | acceptor_gain | 1.0000 |
| 17:43013266:G:GA | acceptor_gain | 1.0000 |
| 17:43013266:GT:G | acceptor_gain | 1.0000 |
| 17:43013266:GTG:G | acceptor_gain | 1.0000 |
| 17:43013266:GTGG:G | acceptor_gain | 1.0000 |
| 17:43013266:GTGGC:G | acceptor_gain | 1.0000 |
| 17:43013267:T:TA | acceptor_gain | 1.0000 |
| 17:43013590:A:T | donor_gain | 1.0000 |
| 17:43013594:G:GT | donor_gain | 1.0000 |
| 17:43013608:G:GT | donor_gain | 1.0000 |
AlphaMissense
1838 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:43013647:T:C | F183L | 0.993 |
| 17:43013649:T:A | F183L | 0.993 |
| 17:43013649:T:G | F183L | 0.993 |
| 17:43013648:T:C | F183S | 0.988 |
| 17:43014202:T:C | F255S | 0.988 |
| 17:43013648:T:G | F183C | 0.982 |
| 17:43014201:T:C | F255L | 0.982 |
| 17:43014203:C:A | F255L | 0.982 |
| 17:43014203:C:G | F255L | 0.982 |
| 17:43013179:T:C | F85L | 0.977 |
| 17:43013181:T:A | F85L | 0.977 |
| 17:43013181:T:G | F85L | 0.977 |
| 17:43013510:T:A | V137D | 0.972 |
| 17:43013572:T:C | F158L | 0.970 |
| 17:43013574:C:A | F158L | 0.970 |
| 17:43013574:C:G | F158L | 0.970 |
| 17:43013805:T:C | F198L | 0.969 |
| 17:43013807:C:A | F198L | 0.969 |
| 17:43013807:C:G | F198L | 0.969 |
| 17:43014279:T:C | F281L | 0.967 |
| 17:43014281:C:A | F281L | 0.967 |
| 17:43014281:C:G | F281L | 0.967 |
| 17:43013575:T:C | F159L | 0.966 |
| 17:43013577:T:A | F159L | 0.966 |
| 17:43013577:T:G | F159L | 0.966 |
| 17:43013080:T:C | F52L | 0.962 |
| 17:43013082:C:A | F52L | 0.962 |
| 17:43013082:C:G | F52L | 0.962 |
| 17:43014280:T:C | F281S | 0.956 |
| 17:43014206:G:C | Q256H | 0.955 |
dbSNP variants (sampled 300 via entrez): RS1000057655 (17:43014740 T>A), RS1000529574 (17:43014481 T>C), RS1000581878 (17:43014940 T>C), RS1001071099 (17:43009558 T>C,G), RS1001216878 (17:43005936 C>T), RS1001335123 (17:43009274 C>T), RS1001514036 (17:43008583 G>A), RS1001697524 (17:43005247 C>T), RS1001732294 (17:43012302 T>C), RS1001994736 (17:43012067 C>A,T), RS1002014565 (17:43005107 TAAC>T), RS1002469298 (17:43010810 C>A,T), RS1002597752 (17:43013494 G>C), RS1002700524 (17:43006734 C>A,T), RS1003279466 (17:43006692 C>A,T)
Disease associations
OMIM: gene MIM:600735 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005194_158 | Coronary artery disease | 6.000000e-07 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
61 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cyclosporine | decreases expression, increases expression | 4 |
| Cisplatin | affects cotreatment, increases expression, affects reaction, decreases expression, decreases reaction | 2 |
| Estradiol | affects cotreatment, decreases expression, increases expression | 2 |
| Nickel | decreases expression, increases expression | 2 |
| Tretinoin | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| sotorasib | affects cotreatment, increases expression | 1 |
| aminomethylphosphonic acid (AMPA) | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases expression | 1 |
| glycidyl methacrylate | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| tamibarotene | increases expression | 1 |
| K 7174 | decreases expression | 1 |
| erastin | decreases reaction, affects reaction, decreases expression | 1 |
| tofacitinib | decreases expression | 1 |
| nutlin 3 | increases expression, affects cotreatment | 1 |
| ICG 001 | increases expression | 1 |
| N4-(2,2-dimethyl-3-oxo-4H-pyrid(1,4)oxazin-6-yl)-5-fluoro-N2-(3,4,5-trimethoxyphenyl)-2,4-pyrimidinediamine | decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| trametinib | affects cotreatment, increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression, increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Air Pollutants | decreases expression | 1 |
| Air Pollutants, Occupational | decreases expression | 1 |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2N9 | Abcam A-549 IFI35 KO | Cancer cell line | Male |
| CVCL_E1D0 | Ubigene THP-1 IFI35 KO | Cancer cell line | Male |
| CVCL_SS13 | HAP1 IFI35 (-) 1 | Cancer cell line | Male |
| CVCL_SS14 | HAP1 IFI35 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.