IFNL4
gene geneOn this page
Also known as IFNAN
Summary
IFNL4 (interferon lambda 4 (gene/pseudogene), HGNC:44480) is a protein-coding gene on chromosome 19q13.2, encoding Interferon lambda-4 (K9M1U5). Cytokine that may trigger an antiviral response activating the JAK-STAT pathway and up-regulating specifically some interferon-stimulated genes.
This gene is a polymorphic pseudogene which, in some humans, encodes the interferon (IFN) lambda 4 protein. Humans are polymorphic for the dinucleotide TT/deltaG allele. Compared to the ancestral state in non-human primates, the TT allele produces a frameshift in the coding region of this gene which is predicted to induce nonsense-mediated mRNA decay. This allele, and an allele in the first intron of this gene, have experienced a rapid increase in frequency and show indications of positive selection. The ancestral states of these alleles are associated with an impaired ability to clear hepatitis C virus. This gene, like other type III interferons (IFNs), interacts with the IFN lambda receptor complex (IFNLR) whose signaling is generally restricted to epithelial cells. This gene resides in a cluster of four type III IFN genes and at least two pseudogenes on chromosome 19q13.2. In general, interferons are produced in response to viral infection and block viral replication and propagation to uninfected cells by activating the JAK-STAT pathway and up-regulating antiviral genes. Multiple alternatively spliced transcripts have been described for this gene but their biological validity and protein coding status is still being ascertained.
Source: NCBI Gene 101180976 — RefSeq curated summary.
At a glance
- GWAS associations: 11
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:44480 |
| Approved symbol | IFNL4 |
| Name | interferon lambda 4 (gene/pseudogene) |
| Location | 19q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | IFNAN |
| Ensembl gene | ENSG00000272395 |
| Ensembl biotype | protein_coding |
| OMIM | 615090 |
| Entrez | 101180976 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding_LoF
ENST00000606380, ENST00000634680, ENST00000634967
RefSeq mRNA: 0 — MANE Select: None
Canonical transcript exons
ENST00000606380 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003697533 | 39246314 | 39247231 |
| ENSE00003699536 | 39247389 | 39247463 |
| ENSE00003700526 | 39247924 | 39247995 |
| ENSE00003700571 | 39247708 | 39247851 |
| ENSE00003753056 | 39248429 | 39248856 |
Expression profiles
Bgee: expression breadth broad, 18 present calls, max score 85.96.
Top tissues by expression
107 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.96 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 47.23 | gold quality |
| prefrontal cortex | UBERON:0000451 | 45.49 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 41.36 | silver quality |
| frontal cortex | UBERON:0001870 | 40.41 | gold quality |
| bone marrow cell | CL:0002092 | 40.20 | gold quality |
| hypothalamus | UBERON:0001898 | 39.67 | gold quality |
| granulocyte | CL:0000094 | 39.22 | gold quality |
| cerebral cortex | UBERON:0000956 | 37.90 | gold quality |
| cerebellum | UBERON:0002037 | 37.44 | gold quality |
| cerebellar cortex | UBERON:0002129 | 37.31 | gold quality |
| colonic epithelium | UBERON:0000397 | 37.20 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 37.06 | gold quality |
| sural nerve | UBERON:0015488 | 36.93 | gold quality |
| ventricular zone | UBERON:0003053 | 36.48 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 35.91 | gold quality |
| substantia nigra | UBERON:0002038 | 35.89 | silver quality |
| hindlimb stylopod muscle | UBERON:0004252 | 35.77 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 35.77 | silver quality |
| temporal lobe | UBERON:0001871 | 35.56 | silver quality |
| ganglionic eminence | UBERON:0004023 | 35.49 | gold quality |
| amygdala | UBERON:0001876 | 35.24 | silver quality |
| Ammon’s horn | UBERON:0001954 | 35.24 | silver quality |
| bone marrow | UBERON:0002371 | 35.03 | gold quality |
| myometrium | UBERON:0001296 | 34.70 | silver quality |
| leukocyte | CL:0000738 | 34.44 | gold quality |
| monocyte | CL:0000576 | 34.41 | gold quality |
| body of uterus | UBERON:0009853 | 34.38 | silver quality |
| brain | UBERON:0000955 | 34.32 | silver quality |
| body of pancreas | UBERON:0001150 | 31.82 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.65 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 40)
- A new interferon gene IFNL4 is associated with impaired clearance of hepatitis C virus. (PMID:23291588)
- IFNL4-DeltaG is strongly associated with impaired spontaneous hepatitis C virus clearance. (PMID:23956438)
- IFNL4 improves prediction of response to interferon-based hepatitis C therapies, if SNP rs8099917 is used. (PMID:24205831)
- Its polymorphisms are strongly associated with responses to pegylated interferon (PEG-IFN) and ribavirin (RBV) therapy in patients chronically infected with hepatitis C virus. (PMID:24325405)
- genetic polymorphism is associated with antiviral therapy outcome in the Japanese population (PMID:24355007)
- It was reported that in patients treated with sofosbuvir along with ribavirin, IFNL4-DeltaG is associated with slower early viral decay, due to slower loss of free virus and decreased drug efficacy. (PMID:24367041)
- HCV infection in particular might activate IFNL4 transcription in the liver (PMID:24376784)
- Intrahepatic lymphocyte degranulation activity in HCV-infected patients is associated with IFNL4 polymorphisms and contributes to the clearance of HCV in patients with favorable genotypes under antiviral therapy. (PMID:24415789)
- could not find any difference in the predictive impact of any of three SNPs of IFNL4 or IL-28B with regard to susceptibility to HCV or treatment response (PMID:24646752)
- IFNL3 and IFNL4 single nucleotide polymorphisms correlate with treatment response in hepatitis C patients depending on virus genotype. (PMID:24782280)
- this review summarizes the current knowledge of IFN-l4 and discusses questions that should be addressed to resolve its paradoxical biologic activities.[review] (PMID:24786669)
- This study demonstrates that IFNL4 rs368234815 polymorphism is an important predictor of response to antiviral treatment in the liver transplantation setting. (PMID:25130512)
- Authors report for the first time an association between an IFNL3/4 polymorphism and susceptibility to AIDS-related cytomegalovirus retinitis. (PMID:25259701)
- Polymorphisms in the IFNL3/4 region influence susceptibility to cytomegalovirus replication in solid-organ transplant recipients. (PMID:25301956)
- Natural selection history of IFNL4-inactivating allele has thus shaped present-day heterogeneity across populations not only in genetic variation, but also in relevant phenotypes and susceptibility to hepatitis C. (PMID:25329461)
- IFNL4 gene polymorphisms can predict treatment response in chronic hepatitis C. (PMID:25393304)
- Patients harbouring the impaired IFNlambda4-S70 variant display lower interferon-stimulated gene (ISG) expression levels. (PMID:25534433)
- Among Puerto Rican hepatitis C patients, SNP frequencies of IFNL4 locus ss469415590 were 26% (TT/TT), 48% (TT/DeltaG), and 26% (DeltaG/DeltaG). (PMID:25563035)
- Genetic analysis revealed associations of rs368234815 of IFNL4 with sustained virological response and pre-treatment viral load. (PMID:25577150)
- Overexpression of IFNlambda4 suppressed IL28B induction and promoter activation. (PMID:25611696)
- We found an independent association of the IFNL4 ss469415590 polymorphism with higher prevalence of AIDS-defining illnesses and lower CD4 T cell numbers. (PMID:25658540)
- IFNL4 and IFNL3 associated polymorphisms strongly influence the spontaneous IFN-alpha receptor-1 expression in HCV-infected patients (PMID:25675103)
- Interferon-lambda rs12979860 genotype is a strong aetiology-independent predictor of tissue inflammation and fibrosis in viral and non-viral chronic liver disease. (PMID:25740255)
- The IFNL3.rs12979860 and IFNL4.ss469415590 variants have comparable effects on spontaneous resolution of hepatitis C virus infection among Egyptians. (PMID:25788203)
- HCV infection is proposed to induce a more efficient antiviral response in individuals with the IFNL4 TT/TT genotype that results either in viral clearance or selection for viral adaptations. (PMID:25849245)
- Females with the IFNL4 genotype detected were more likely to have HCV reclearance. (PMID:25883387)
- IFNL4 polymorphisms were predictive of treatment outcome only for patients infected with HCV-1. (PMID:25938236)
- Transcriptome analysis reveals a classical interferon signature induced by IFNlambda4 in human primary cells (PMID:26066369)
- The current study is the first to investigate the effect of IFNL3 and IFNL4 polymorphisms on liver-related mortality. The lower risk of death among African American HIV/HCV-coinfected women is not explained by genetic variation in the IFN-lambda region. (PMID:26115445)
- IFN-l4 may have at least 3 functions in human hepatic cells-activation of interferon signaling, inhibition of cell proliferation, and induction of cell death (PMID:26134097)
- IFNL3 and IFNL4 genotyping could identify those likely to clear naturally and in whom treatment could be delayed, or help prioritize Directly-acting antivirals treatment to those less likely to respond to interferon-containing regimens. (PMID:26150150)
- IFNL4-DeltaG/TT is the primary IFN-lambda region polymorphism for impaired HCV clearance (PMID:26186989)
- Studies indicate that the type III interferons (IFNs) or IFN-lambdas consists of four members: IFN-lambda1 (IL-29), IFN-lambda2 (IL28A), IFN-lambda3 (IL-28B) and IFN-lambda4. (PMID:26194286)
- Single Nucleotide Polymorphism of Interferon Lambda-4 Gene is not Associated with Treatment Response to Pegylated Interferon in Chronic Hepatitis B. (PMID:26225703)
- Despite differences in protein sequences, functional properties of the recombinant human and nonhuman IFN-l4 proteins are comparable-they are all biologically active for induction of interferon signaling. (PMID:26308395)
- The hepatitis C protective allele TT was associated with decreased likelihood of HIV-1 infection in male intravenous drug users [odds ratio (OR): 0.3; P = 0.006], and this association was not modified by the genotype of CCR5. (PMID:26372394)
- Single-nucleotide polymorphisms (SNPs) in the interferon lambda 4 (IFNL4) gene are predictors for treatment success in patients with hepatitis C virus (HCV) infection (PMID:26406534)
- IFNL4-DeltaG/TT genotype was not associated with HSV-related outcomes, including episodes of oral or genital herpes (PMID:26431156)
- Single-nucleotide polymorphisms (rs12979860) in the intronic region of the interferon-lambda4 (IFNL4) gene modulate liver inflammation and fibrosis, in an etiology independent manner. (PMID:26592354)
- data on ex vivo derived liver tissue samples argue against an attenuating impact of IFNL3 rs4803217 or IFNL4 rs368234815 minor alleles on hepatic IFNL3 gene expression in vivo. (PMID:26606750)
Cross-species orthologs
0 orthologs
Protein
Protein identifiers
Interferon lambda-4 — K9M1U5 (reviewed: K9M1U5)
All UniProt accessions (1): K9M1I6
UniProt curated annotations — full annotation on UniProt →
Function. Cytokine that may trigger an antiviral response activating the JAK-STAT pathway and up-regulating specifically some interferon-stimulated genes.
Subcellular location. Cytoplasm. Secreted.
Induction. Up-regulated by polyinosinic:polycytidylic acid (polyI:C) which mimics the double-stranded hepatitis C virus.
Polymorphism. A one-base insertion, introducing a frameshift at position 22, results in inactivation of the gene in a majority of the population. That polymorphism is a good marker for predicting spontaneous hepatitis C virus (HCV) clearance and the response to treatment of chronic hepatitis C. The allele producing a functional protein able to induce an antiviral response and to prevent HCV replication in cell cultures, is less frequent in human populations and is associated with impaired spontaneous clearance of HCV.
Miscellaneous. Active form which is able to induce an antiviral response and prevent hepatitis C virus (HCV) replication in cell cultures. Inactive form. Inactive form unable to elicit an antiviral response. Inactive form unable to elicit an antiviral response.
Similarity. Belongs to the type-III (or lambda) interferon family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| K9M1U5-1 | 1, IFNL4, p179 | yes |
| K9M1U5-2 | 2, p170 | |
| K9M1U5-3 | 3, p131 | |
| K9M1U5-4 | 4, p107 |
RefSeq proteins (0): (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR029177 | INF_lambda | Family |
| IPR038326 | IFN-lambda_sf | Homologous_superfamily |
Pfam: PF15177
UniProt features (16 total): helix 6, disulfide bond 3, splice variant 3, signal peptide 1, chain 1, region of interest 1, sequence conflict 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9BPU | ELECTRON MICROSCOPY | 3.26 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-K9M1U5-F1 | 77.09 | 0.26 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (3): 27–122, 62–152, 76–178
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 30 (showing top):
GOBP_CELLULAR_RESPONSE_TO_VIRUS, GOBP_RESPONSE_TO_PEPTIDE, GOBP_CELL_SURFACE_RECEPTOR_SIGNALING_PATHWAY_VIA_JAK_STAT, GOBP_REGULATION_OF_IMMUNE_RESPONSE, GOBP_DEFENSE_RESPONSE_TO_OTHER_ORGANISM, GOBP_DEFENSE_RESPONSE_TO_VIRUS, GOMF_CYTOKINE_ACTIVITY, GOMF_SIGNALING_RECEPTOR_BINDING, GOBP_RESPONSE_TO_VIRUS, GOMF_SIGNALING_RECEPTOR_REGULATOR_ACTIVITY, GOBP_PEPTIDYL_TYROSINE_MODIFICATION, GOBP_CELL_SURFACE_RECEPTOR_SIGNALING_PATHWAY_VIA_STAT, BLANCO_MELO_COVID19_SARS_COV_2_INFECTION_CALU3_CELLS_UP, BLANCO_MELO_BRONCHIAL_EPITHELIAL_CELLS_INFLUENZA_A_DEL_NS1_INFECTION_UP, GOBP_PEPTIDYL_AMINO_ACID_MODIFICATION
GO Biological Process (6): tyrosine phosphorylation of STAT protein (GO:0007260), type III interferon-mediated signaling pathway (GO:0038196), innate immune response (GO:0045087), positive regulation of immune response (GO:0050778), defense response to virus (GO:0051607), cellular response to virus (GO:0098586)
GO Molecular Function (2): signaling receptor binding (GO:0005102), cytokine activity (GO:0005125)
GO Cellular Component (2): obsolete extracellular space (GO:0005615), cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| immune response | 2 |
| response to virus | 2 |
| cell surface receptor signaling pathway via JAK-STAT | 1 |
| peptidyl-tyrosine phosphorylation | 1 |
| cellular response to type III interferon | 1 |
| interferon-mediated signaling pathway | 1 |
| defense response to symbiont | 1 |
| positive regulation of immune system process | 1 |
| positive regulation of response to stimulus | 1 |
| regulation of immune response | 1 |
| defense response | 1 |
| protein binding | 1 |
| receptor ligand activity | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
0 interactions, top by confidence:
BioGRID (1): RIOK2 (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A0A140LIA7, A0A1B0GTL2, A2VDX9, A3FFS8, A6NCS6, A8MVW0, K9M1U5, O43541, P01588, P03971, P03972, P07321, P07865, P0C7N4, P0DPE3, P13725, P27106, P29676, P33707, P33708, P33709, P48617, P49000, P49157, P53346, P79295, Q02011, Q0Z956, Q16619, Q1HCM0, Q28513, Q29RM6, Q5BLP8, Q5S1V9, Q60753, Q63086, Q65Z15, Q6H8S9, Q6H8T0, Q6H8T1
Diamond homologs: B4ER10, K9M1U5, Q4VK74, Q8CGK6, Q8IU54, Q8IZI9, Q8IZJ0
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
0 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 0 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
579 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:39247852:C:CC | acceptor_gain | 1.0000 |
| 19:39248427:A:AC | donor_gain | 1.0000 |
| 19:39248428:C:CC | donor_gain | 1.0000 |
| 19:39248428:CGTAG:C | donor_gain | 1.0000 |
| 19:39247722:C:A | donor_gain | 0.9900 |
| 19:39247847:CAGGA:C | acceptor_gain | 0.9900 |
| 19:39247848:AGGA:A | acceptor_gain | 0.9900 |
| 19:39247849:GGA:G | acceptor_gain | 0.9900 |
| 19:39247850:GA:G | acceptor_gain | 0.9900 |
| 19:39247850:GAC:G | acceptor_loss | 0.9900 |
| 19:39247852:C:T | acceptor_loss | 0.9900 |
| 19:39247944:T:TA | donor_gain | 0.9900 |
| 19:39248422:GACTT:G | donor_loss | 0.9900 |
| 19:39248423:ACTTA:A | donor_loss | 0.9900 |
| 19:39248424:CTTA:C | donor_loss | 0.9900 |
| 19:39248425:TTACG:T | donor_loss | 0.9900 |
| 19:39248426:TACG:T | donor_loss | 0.9900 |
| 19:39248427:A:AG | donor_loss | 0.9900 |
| 19:39248428:C:A | donor_loss | 0.9900 |
| 19:39248432:G:C | donor_gain | 0.9900 |
| 19:39247239:C:CT | acceptor_gain | 0.9800 |
| 19:39247706:A:AC | donor_gain | 0.9800 |
| 19:39247707:C:CC | donor_gain | 0.9800 |
| 19:39247707:CG:C | donor_gain | 0.9800 |
| 19:39248428:CG:C | donor_gain | 0.9800 |
| 19:39248428:CGT:C | donor_gain | 0.9800 |
| 19:39248428:CGTA:C | donor_gain | 0.9800 |
| 19:39248421:TGAC:T | donor_loss | 0.9700 |
| 19:39248442:AGCG:A | donor_gain | 0.9700 |
| 19:39247388:CCG:C | donor_gain | 0.9600 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000085840 (19:39248277 T>C), RS1001485874 (19:39249500 T>C), RS1001585285 (19:39248316 G>A), RS1001953072 (19:39249462 T>C,G), RS1002384269 (19:39249178 A>G), RS1003426909 (19:39246228 C>T), RS1003660380 (19:39250355 G>A), RS1003888415 (19:39245982 A>G), RS1004129451 (19:39250073 G>T), RS1004348645 (19:39249106 G>A), RS1004683763 (19:39250257 C>T), RS1004936794 (19:39246689 T>C,G), RS1005397451 (19:39246328 G>A), RS1005887188 (19:39247655 G>A), RS1005945581 (19:39247570 C>A,G,T)
Disease associations
OMIM: gene MIM:615090 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
11 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002967_3 | Mucinous ovarian carcinoma | 7.000000e-13 |
| GCST002967_6 | Mucinous ovarian carcinoma | 1.000000e-08 |
| GCST005017_16 | Hepatitis A | 6.000000e-08 |
| GCST007631_2 | Hepatitis C (spontaneous viral clearance) | 6.000000e-50 |
| GCST007632_1 | Hepatitis C (spontaneous viral clearance) | 1.000000e-15 |
| GCST007633_1 | Hepatitis C (spontaneous viral clearance) | 7.000000e-24 |
| GCST007634_1 | Hepatitis C (spontaneous viral clearance) | 3.000000e-12 |
| GCST009439_25 | Age-related cognitive decline (language) (slope of z-scores) | 6.000000e-06 |
| GCST011878_7 | Mitochondrial heteroplasmy measurement | 6.000000e-13 |
| GCST011999_13 | Hepatitis C (spontaneous viral clearance) | 5.000000e-21 |
| GCST011999_5 | Hepatitis C (spontaneous viral clearance) | 4.000000e-25 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008415 | susceptibility to hepatitis A infection measurement |
| EFO:0009785 | remission |
| EFO:0007710 | cognitive decline measurement |
| EFO:0600008 | mitochondrial heteroplasmy measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
21 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs11322783 | Efficacy | 1B | peginterferon alfa-2a;peginterferon alfa-2b;ribavirin | Chronic hepatitis C virus infection |
| rs11322783 | Efficacy | 3 | peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;simeprevir | Chronic hepatitis C virus infection |
| rs11322783 | Efficacy | 3 | direct acting antivirals | Sustained virological response (SVR) |
| rs11322783 | Efficacy | 3 | sofosbuvir | Chronic hepatitis C virus infection |
| rs117648444 | Efficacy | 3 | peginterferon alfa-2a;peginterferon alfa-2b;ribavirin | Chronic hepatitis C virus infection |
| rs12979860 | Efficacy | 1A | peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;telaprevir | Chronic hepatitis C virus infection |
| rs12979860 | Efficacy | 3 | interferons | Hepatitis C virus infection |
| rs12979860 | Efficacy | 3 | peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;simeprevir | Chronic hepatitis C virus infection |
| rs12979860 | Efficacy | 3 | daclatasvir;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin | Chronic hepatitis C virus infection |
| rs12979860 | Efficacy | 3 | ledipasvir;sofosbuvir | Chronic hepatitis C virus infection |
| rs12979860 | Metabolism/PK | 3 | tenofovir | HIV infectious disease |
| rs12979860 | Efficacy | 1A | peginterferon alfa-2a;peginterferon alfa-2b;ribavirin | Hepatitis C virus infection |
| rs12979860 | Efficacy | 1A | boceprevir;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin | Chronic hepatitis C virus infection |
| rs12979860 | Efficacy | 3 | deleobuvir;faldaprevir | Chronic hepatitis C virus infection |
| rs12979860 | Efficacy | 3 | ledipasvir;sofosbuvir | Chronic hepatitis C virus infection;Recurrence |
| rs12979860 | Efficacy | 3 | sofosbuvir;velpatasvir;voxilaprevir | Chronic hepatitis C virus infection |
| rs12979860 | Efficacy | 3 | peginterferon alfa-2a;peginterferon alfa-2b | Myeloproliferative Disorder |
| rs12979860 | Efficacy | 3 | peginterferon alfa-2a | Hepatitis B;Chronic |
| rs12979860 | Efficacy | 3 | sofosbuvir | Chronic hepatitis C virus infection |
| rs8099917 | Efficacy | 3 | ledipasvir;sofosbuvir | Chronic hepatitis C virus infection |
PharmGKB variants
4 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs8099917 | IFNL3, IFNL4 | 1B | 93.25 | 4 | interferons;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;telaprevir;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;simeprevir;ledipasvir;sofosbuvir |
| rs12979860 | IFNL3, IFNL4 | 1A | 350.50 | 15 | boceprevir;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;telaprevir;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;simeprevir;ledipasvir;sofosbuvir;daclatasvir;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;sofosbuvir;velpatasvir;voxilaprevir;peginterferon alfa-2a;peginterferon alfa-2b;peginterferon alfa-2a;sofosbuvir |
| rs117648444 | IFNL3, IFNL4 | 3 | 3.50 | 1 | peginterferon alfa-2a;peginterferon alfa-2b;ribavirin |
| rs11322783 | IFNL4 | 1B | 65.00 | 4 | sofosbuvir;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;simeprevir;peginterferon alfa-2a;peginterferon alfa-2b;ribavirin;direct acting antivirals |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hepatitis C virus infection, ovarian mucinous adenocarcinoma