IGSF3
geneOn this page
Also known as V8EWI-3MGC117164
Summary
IGSF3 (immunoglobulin superfamily member 3, HGNC:5950) is a protein-coding gene on chromosome 1p13.1, encoding Immunoglobulin superfamily member 3 (O75054).
The protein encoded by this gene is an immunoglobulin-like membrane protein containing several V-type Ig-like domains. A mutation in this gene has been associated with bilateral nasolacrimal duct obstruction (LCDD).
Source: NCBI Gene 3321 — RefSeq curated summary.
At a glance
- Gene–disease (curated): familial congenital nasolacrimal duct obstruction (Supportive, GenCC)
- GWAS associations: 3
- Clinical variants (ClinVar): 216 total — 1 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 8
- MANE Select transcript:
NM_001007237
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:5950 |
| Approved symbol | IGSF3 |
| Name | immunoglobulin superfamily member 3 |
| Location | 1p13.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | V8, EWI-3, MGC117164 |
| Ensembl gene | ENSG00000143061 |
| Ensembl biotype | protein_coding |
| OMIM | 603491 |
| Entrez | 3321 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 7 protein_coding
ENST00000318837, ENST00000369483, ENST00000369486, ENST00000481589, ENST00000897088, ENST00000897089, ENST00000897090
RefSeq mRNA: 2 — MANE Select: NM_001007237
NM_001007237, NM_001542
CCDS: CCDS30813, CCDS30814
Canonical transcript exons
ENST00000369486 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000957893 | 116607942 | 116608331 |
| ENSE00000957897 | 116584645 | 116585052 |
| ENSE00000957898 | 116579392 | 116579877 |
| ENSE00001141822 | 116616080 | 116616457 |
| ENSE00001377727 | 116574408 | 116577562 |
| ENSE00001421221 | 116666284 | 116666956 |
| ENSE00001684018 | 116603624 | 116604025 |
| ENSE00001705441 | 116613765 | 116614175 |
| ENSE00001750577 | 116588694 | 116589104 |
| ENSE00001760323 | 116599941 | 116600345 |
| ENSE00001842317 | 116667618 | 116667733 |
Expression profiles
Bgee: expression breadth ubiquitous, 265 present calls, max score 97.66.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.7844 / max 150.7168, expressed in 1015 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 14017 | 5.9751 | 1004 |
| 201630 | 0.4093 | 273 |
| 14016 | 0.3999 | 219 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 97.66 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 97.56 | gold quality |
| gingival epithelium | UBERON:0001949 | 97.45 | gold quality |
| gingiva | UBERON:0001828 | 96.93 | gold quality |
| tibia | UBERON:0000979 | 96.62 | gold quality |
| squamous epithelium | UBERON:0006914 | 95.60 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 95.24 | gold quality |
| ganglionic eminence | UBERON:0004023 | 95.12 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 94.68 | gold quality |
| embryo | UBERON:0000922 | 94.43 | gold quality |
| mammalian vulva | UBERON:0000997 | 93.25 | gold quality |
| hair follicle | UBERON:0002073 | 93.21 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 92.98 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 90.99 | gold quality |
| placenta | UBERON:0001987 | 90.68 | gold quality |
| ventricular zone | UBERON:0003053 | 90.62 | gold quality |
| oral cavity | UBERON:0000167 | 90.56 | gold quality |
| renal medulla | UBERON:0000362 | 89.90 | gold quality |
| cartilage tissue | UBERON:0002418 | 89.86 | gold quality |
| upper arm skin | UBERON:0004263 | 89.81 | gold quality |
| ileal mucosa | UBERON:0000331 | 88.83 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 88.58 | gold quality |
| heart right ventricle | UBERON:0002080 | 88.45 | gold quality |
| nephron tubule | UBERON:0001231 | 88.23 | gold quality |
| cervix epithelium | UBERON:0004801 | 88.09 | gold quality |
| pancreatic ductal cell | CL:0002079 | 87.77 | gold quality |
| jejunal mucosa | UBERON:0000399 | 87.33 | gold quality |
| skin of hip | UBERON:0001554 | 87.20 | gold quality |
| esophagus mucosa | UBERON:0002469 | 86.81 | gold quality |
| upper leg skin | UBERON:0004262 | 86.69 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 11.02 |
| E-CURD-135 | no | 396.85 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXP3
miRNA regulators (miRDB)
165 targeting IGSF3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-6740-5P | 100.00 | 65.64 | 932 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-3617-3P | 99.98 | 67.86 | 918 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
Literature-anchored findings (GeneRIF, showing 3)
- Based on IGSF3 mutation in a family with congenital nasolacrimal duct obstruction we conclude that the disruption of IGSF3 is the very likely cause of autosomal recessive nasolacrimal duct obstruction. (PMID:24372406)
- the IGSF23 mutation led to decreased c-Fos and NFATC1 expression levels by inhibiting the mitogen-activated protein kinase signalling pathways (PMID:31560140)
- IGSF3 mutation identified in patient with severe COPD alters cell function and motility. (PMID:32573489)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | igsf3 | ENSDARG00000077002 |
| mus_musculus | Igsf3 | ENSMUSG00000042035 |
| rattus_norvegicus | Igsf3 | ENSRNOG00000023851 |
Paralogs (5): PTGFRN (ENSG00000134247), CD101 (ENSG00000134256), IGSF8 (ENSG00000162729), VSTM4 (ENSG00000165633), VSTM2A (ENSG00000170419)
Protein
Protein identifiers
Immunoglobulin superfamily member 3 — O75054 (reviewed: O75054)
Alternative names: Glu-Trp-Ile EWI motif-containing protein 3
All UniProt accessions (1): O75054
UniProt curated annotations — full annotation on UniProt →
Subcellular location. Membrane.
Tissue specificity. Expressed in a wide range of tissues with High expression in Placenta, kidney and lung.
Disease relevance. Lacrimal duct defect (LCDD) [MIM:149700] A condition resulting in the imbalance between tear production and tear drainage. Infants typically manifest persistent epiphora and/or recurrent infections of the lacrimal pathway, such as conjunctivitis. LCDD is caused by failure of the nasolacrimal duct to open into the inferior meatus. The disease is caused by variants affecting the gene represented in this entry.
Miscellaneous. Likely interchromosomal Alu-mediated fusion between IGSF3 on 1p13.1 and GGT on 22q11.2. Breakpoints occurred inside Alu elements as well as in the 5’ or 3’ ends of them.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O75054-1 | 1 | yes |
| O75054-2 | 2 |
RefSeq proteins (2): NP_001007238, NP_001533 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003598 | Ig_sub2 | Domain |
| IPR003599 | Ig_sub | Domain |
| IPR007110 | Ig-like_dom | Domain |
| IPR013106 | Ig_V-set | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR051102 | IgSF_V-set/TM_domain | Family |
Pfam: PF07686
UniProt features (36 total): domain 8, disulfide bond 8, glycosylation site 5, sequence variant 3, sequence conflict 3, topological domain 2, signal peptide 1, chain 1, region of interest 1, short sequence motif 1, compositionally biased region 1, splice variant 1, transmembrane region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O75054-F1 | 81.81 | 0.35 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (8): 42–120, 167–246, 302–376, 432–511, 566–645, 701–782, 838–918, 974–1080
Glycosylation sites (5): 43, 418, 655, 842, 1077
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 199 (showing top):
MODULE_52, WANG_CLIM2_TARGETS_UP, MYOGENIN_Q6, KAAB_FAILED_HEART_ATRIUM_DN, GOCC_CELL_SURFACE, BROWNE_HCMV_INFECTION_16HR_UP, GGGTGGRR_PAX4_03, MODULE_118, RICKMAN_METASTASIS_DN, GOBP_EXOCRINE_SYSTEM_DEVELOPMENT, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5, LIAO_METASTASIS, TGANTCA_AP1_C, TGACATY_UNKNOWN, NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN
GO Biological Process (1): lacrimal gland development (GO:0032808)
GO Molecular Function (0):
GO Cellular Component (2): cell surface (GO:0009986), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| exocrine system development | 1 |
| gland development | 1 |
Protein interactions and networks
STRING
1072 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| IGSF3 | CD9 | P21926 | 630 |
| IGSF3 | CD81 | P18582 | 595 |
| IGSF3 | ERVFRD-1 | P60508 | 558 |
| IGSF3 | ERV3-1 | Q14264 | 558 |
| IGSF3 | TSPAN7 | P41732 | 524 |
| IGSF3 | GDAP2 | Q9NXN4 | 461 |
| IGSF3 | ERVW-1 | Q9UQF0 | 438 |
| IGSF3 | TTC12 | Q9H892 | 424 |
| IGSF3 | WDR3 | Q9UNX4 | 421 |
| IGSF3 | CROCC | Q5TZA2 | 415 |
| IGSF3 | IGSF22 | Q8N9C0 | 404 |
| IGSF3 | MRFAP1L2 | B2RBV5 | 399 |
| IGSF3 | APMAP | Q9HDC9 | 394 |
| IGSF3 | ZNF717 | Q9BY31 | 394 |
| IGSF3 | PARP4 | Q9UKK3 | 389 |
IntAct
69 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TSPAN15 | ADAM10 | psi-mi:“MI:0914”(association) | 0.840 |
| TSPAN5 | ADAM10 | psi-mi:“MI:0914”(association) | 0.800 |
| CD9 | ADAM10 | psi-mi:“MI:0914”(association) | 0.750 |
| TSPAN14 | ADAM10 | psi-mi:“MI:0914”(association) | 0.740 |
| DYNLL1 | BLTP3B | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| FBXO6 | MAN2B1 | psi-mi:“MI:0914”(association) | 0.640 |
| SLC39A5 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.640 |
| PICK1 | ILVBL | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| DEFA1 | MANBA | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS1 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| CDR2 | IGSF3 | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS1 | LAMA5 | psi-mi:“MI:0914”(association) | 0.530 |
| IGSF3 | HDLBP | psi-mi:“MI:0915”(physical association) | 0.400 |
| IGSF3 | H4C16 | psi-mi:“MI:0915”(physical association) | 0.400 |
| IGSF3 | H2BC21 | psi-mi:“MI:0915”(physical association) | 0.400 |
| IGSF3 | RAN | psi-mi:“MI:0915”(physical association) | 0.400 |
| IGSF3 | H1-2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| IGSF3 | H2BC5 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (112): IGSF3 (Affinity Capture-MS), IGSF3 (Affinity Capture-MS), IGSF3 (Affinity Capture-MS), IGSF3 (Affinity Capture-MS), IGSF3 (Affinity Capture-MS), IGSF3 (Affinity Capture-MS), IGSF3 (Affinity Capture-MS), IGSF3 (Affinity Capture-MS), IGSF3 (Affinity Capture-MS), IGSF3 (Affinity Capture-MS), IGSF3 (Proximity Label-MS), IGSF3 (Affinity Capture-RNA), IGSF3 (Affinity Capture-MS), HIST1H1C (Proximity Label-MS), HIST1H2BD (Proximity Label-MS)
ESM2 similar proteins: A6NMB1, D3ZQE1, E9QA28, G1T7E7, G1TR84, O75054, O75144, P05362, P07722, P09564, P11364, P15151, P16573, P20916, P20917, P32506, P32942, P33729, Q08ET2, Q1WIM1, Q1WIM3, Q28110, Q28125, Q28730, Q28806, Q2WEN9, Q5DRQ8, Q5NKU6, Q5NKV4, Q5NKV6, Q5NKV9, Q5R996, Q60625, Q64JA4, Q6BAA4, Q7TSU7, Q8N126, Q8NFZ8, Q8R464, Q8VBT3
Diamond homologs: A0JPB1, A8E0Y8, O75054, Q5U5A3, Q6ZQA6, Q8R366, Q93033, Q969P0, Q62786, Q9WV91
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 77 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Amyloid fiber formation | 7 | 12.9× | 4e-04 |
| Neutrophil degranulation | 11 | 4.5× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
216 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 1 |
| Uncertain significance | 176 |
| Likely benign | 19 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 162496 | NM_001007237.3(IGSF3):c.2935del (p.Arg979fs) | Pathogenic |
| 1678181 | NM_001007237.3(IGSF3):c.3063del (p.Asp1021fs) | Likely pathogenic |
SpliceAI
2421 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:116577558:GGGAC:G | acceptor_gain | 1.0000 |
| 1:116577559:GGAC:G | acceptor_gain | 1.0000 |
| 1:116577560:GACC:G | acceptor_loss | 1.0000 |
| 1:116577563:C:CC | acceptor_gain | 1.0000 |
| 1:116577564:T:C | acceptor_loss | 1.0000 |
| 1:116577574:CA:C | acceptor_gain | 1.0000 |
| 1:116577575:A:C | acceptor_gain | 1.0000 |
| 1:116579385:AACT:A | donor_loss | 1.0000 |
| 1:116579386:ACTC:A | donor_loss | 1.0000 |
| 1:116579388:TCA:T | donor_loss | 1.0000 |
| 1:116579389:CA:C | donor_loss | 1.0000 |
| 1:116579390:A:AC | donor_gain | 1.0000 |
| 1:116579391:C:CA | donor_gain | 1.0000 |
| 1:116579391:CTTGT:C | donor_gain | 1.0000 |
| 1:116579873:AGCAT:A | acceptor_gain | 1.0000 |
| 1:116579875:CAT:C | acceptor_gain | 1.0000 |
| 1:116579885:A:C | acceptor_gain | 1.0000 |
| 1:116584639:CCTCA:C | donor_loss | 1.0000 |
| 1:116584640:CTCAC:C | donor_loss | 1.0000 |
| 1:116584641:TCA:T | donor_loss | 1.0000 |
| 1:116584642:CAC:C | donor_loss | 1.0000 |
| 1:116584643:A:T | donor_loss | 1.0000 |
| 1:116584644:CCTG:C | donor_loss | 1.0000 |
| 1:116588688:CCTTA:C | donor_loss | 1.0000 |
| 1:116588689:CTTA:C | donor_loss | 1.0000 |
| 1:116588690:TTACC:T | donor_loss | 1.0000 |
| 1:116588691:TAC:T | donor_loss | 1.0000 |
| 1:116588692:A:C | donor_loss | 1.0000 |
| 1:116588693:C:CA | donor_loss | 1.0000 |
| 1:116588693:CCTGG:C | donor_gain | 1.0000 |
AlphaMissense
7844 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:116588788:G:C | C782W | 1.000 |
| 1:116588789:C:G | C782S | 1.000 |
| 1:116588789:C:T | C782Y | 1.000 |
| 1:116588790:A:G | C782R | 1.000 |
| 1:116588790:A:T | C782S | 1.000 |
| 1:116588834:A:G | L767P | 1.000 |
| 1:116588942:A:G | L731P | 1.000 |
| 1:116588983:C:A | W717C | 1.000 |
| 1:116588983:C:G | W717C | 1.000 |
| 1:116588985:A:G | W717R | 1.000 |
| 1:116588985:A:T | W717R | 1.000 |
| 1:116589031:G:C | C701W | 1.000 |
| 1:116589032:C:G | C701S | 1.000 |
| 1:116589032:C:T | C701Y | 1.000 |
| 1:116589033:A:G | C701R | 1.000 |
| 1:116589033:A:T | C701S | 1.000 |
| 1:116600036:C:G | C645S | 1.000 |
| 1:116600037:A:G | C645R | 1.000 |
| 1:116600037:A:T | C645S | 1.000 |
| 1:116600043:A:C | Y643D | 1.000 |
| 1:116600226:A:G | W582R | 1.000 |
| 1:116600226:A:T | W582R | 1.000 |
| 1:116600272:A:C | C566W | 1.000 |
| 1:116600273:C:G | C566S | 1.000 |
| 1:116600274:A:G | C566R | 1.000 |
| 1:116600274:A:T | C566S | 1.000 |
| 1:116608037:C:G | C376S | 1.000 |
| 1:116608038:A:G | C376R | 1.000 |
| 1:116608038:A:T | C376S | 1.000 |
| 1:116608212:A:G | W318R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000035330 (1:116587196 T>C,G), RS1000052371 (1:116630118 G>A,C), RS1000308253 (1:116574831 T>G), RS1000353789 (1:116663721 G>A), RS1000376397 (1:116623956 G>A), RS1000413314 (1:116581260 G>A), RS1000444067 (1:116659756 C>T), RS1000563159 (1:116659982 G>C), RS1000581093 (1:116617476 G>A,C), RS1000617940 (1:116580877 T>C), RS1000630325 (1:116610545 T>C), RS1000742625 (1:116653594 C>A,T), RS1000753311 (1:116647107 C>T), RS1000766129 (1:116617208 A>G), RS1000779721 (1:116598959 T>C)
Disease associations
OMIM: gene MIM:603491 | disease phenotypes: MIM:149700
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| familial congenital nasolacrimal duct obstruction | Supportive | Autosomal recessive |
Mondo (4): familial congenital nasolacrimal duct obstruction (MONDO:0007871), myoepithelial tumor (MONDO:0002380), esophageal atresia (MONDO:0001044), pyloric stenosis (MONDO:0001561)
Orphanet (1): Familial congenital nasolacrimal duct obstruction (Orphanet:451612)
HPO phenotypes
8 total (10 of 8 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000246 | Sinusitis |
| HP:0000509 | Conjunctivitis |
| HP:0000564 | Lacrimal duct atresia |
| HP:0000620 | Dacryocystitis |
| HP:0009926 | Epiphora |
| HP:0030752 | Dacryocystocele |
| HP:0100539 | Periorbital edema |
| HP:0002032 | Esophageal atresia |
| HP:0002021 | Pyloric stenosis |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002088_6 | Asthma (childhood onset) | 5.000000e-06 |
| GCST006585_2680 | Blood protein levels | 2.000000e-06 |
| GCST011122_28 | Walking pace | 2.000000e-08 |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D004933 | Esophageal Atresia | C06.198.330; C06.405.117.260; C16.131.314.330 |
| D017219 | Gastric Outlet Obstruction | C06.405.748.340 |
| D009208 | Myoepithelioma | C04.557.435.585 |
| D011707 | Pyloric Stenosis | C06.405.748.340.690 |
| C566703 | Lacrimal Puncta, Absence of (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases methylation, affects cotreatment, increases expression | 6 |
| sodium arsenite | decreases expression, increases expression | 3 |
| bisphenol A | decreases expression, decreases methylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| TL8-506 | affects cotreatment, increases expression | 1 |
| methylselenic acid | affects expression | 1 |
| afimoxifene | decreases expression, decreases reaction | 1 |
| butyraldehyde | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | decreases reaction, increases expression | 1 |
| tebuconazole | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| ICG 001 | increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Decitabine | affects expression | 1 |
| Leflunomide | decreases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Calcitriol | increases expression | 1 |
| Cisplatin | affects expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Estrogens | decreases expression, decreases reaction | 1 |
| Gasoline | increases abundance, increases expression, affects cotreatment | 1 |
| Hydrogen Peroxide | increases expression | 1 |
| Lipopolysaccharides | increases expression, decreases reaction | 1 |
| Nicotine | increases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D9GU | Ubigene HEK293 IGSF3 KO | Transformed cell line | Female |
Clinical trials (associated diseases)
64 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00556283 | PHASE4 | COMPLETED | RCT: STARR vs Biofeedback |
| NCT00226044 | PHASE3 | COMPLETED | Rectal and Oral Omeprazole Treatment of Reflux Disease in Infants. |
| NCT03127345 | PHASE2 | WITHDRAWN | Omega 3 Fatty Acid Treatment for Pediatric Musculoskeletal Health |
| NCT03600649 | PHASE1 | UNKNOWN | Clinical Trial of SP-2577 (Seclidemstat) in Patients With Relapsed or Refractory Ewing or Ewing-related Sarcomas |
| NCT05266196 | PHASE1/PHASE2 | UNKNOWN | A Rollover Protocol to Allow for Continued Access to the LSD1 Inhibitor Seclidemstat (SP-2577) |
| NCT06239272 | PHASE1/PHASE2 | RECRUITING | NRSTS2021, A Risk Adapted Study Evaluating Maintenance Pazopanib, Limited Margin, Dose-Escalated Radiation Therapy and Selinexor in Non-Rhabdomyosarcoma Soft Tissue Sarcoma (NRSTS) |
| NCT06625190 | PHASE1/PHASE2 | RECRUITING | Alpha/Beta T and B Cell Depletion With Zoledronic Acid for Solid Tumors |
| NCT06244420 | Not specified | COMPLETED | Malignant Myoepithelioma of Bone and Soft Tissues: Diagnostic Imaging and Histology in Relation to Prognosis |
| NCT02033772 | Not specified | COMPLETED | Prospective Data Collection of Patients < 6 Months of Age Undergoing Thoracoscopic Surgery |
| NCT02466451 | Not specified | COMPLETED | Study in Children With the Diagnosis of Congenital Diaphragmatic Hernia (CDH) and Oesophageal Atresia (EA) |
| NCT02525705 | Not specified | COMPLETED | Dumping Syndrome After Operation of Esophageal Atresia Type III |
| NCT02883725 | Not specified | COMPLETED | National Register of Oesophageal Atresia |
| NCT03023865 | Not specified | UNKNOWN | Individualized Management for Long Gap Esophageal Atresia |
| NCT03415893 | Not specified | COMPLETED | High-resolution Esophageal Manometry |
| NCT03455881 | Not specified | UNKNOWN | Phenotypic and Genetic Assessment of Tracheal and Esophageal Birth Defects in Patients |
| NCT03615495 | Not specified | COMPLETED | Flourish™ Pediatric Esophageal Atresia |
| NCT03619408 | Not specified | UNKNOWN | Management of Esophagitis Following Repair of Esophageal Atresia |
| NCT03666767 | Not specified | COMPLETED | Management and Outcomes of Congenital Anomalies in Low-, Middle- and High-Income Countries |
| NCT03730454 | Not specified | ACTIVE_NOT_RECRUITING | Transanastomotic Tube for Proximal Esophageal Atresia With Distal Tracheoesophageal Fistula Repair |
| NCT03767673 | Not specified | UNKNOWN | Cardiorespiratory Performance and Pulmonary Microbiome in Patients After Repair of Esophageal Atresia |
| NCT03999008 | Not specified | UNKNOWN | Oral Viscous Budesonide in Anastomotic Stricture After Esophageal Atresia Repair (OVB in EA) |
| NCT04072419 | Not specified | UNKNOWN | Application of Enhanced Recovery After Surgery for Congenital Esophageal Atresia During Perioperative Period |
| NCT04136795 | Not specified | UNKNOWN | Evaluation of the Respiratory Impact After Conventional or Minimally Invasive Esophageal Atresia Surgery |
| NCT04259528 | Not specified | UNKNOWN | Endoscopic Ultrasound Findings in Esophageal Atresia Following Surgical Repair |
| NCT04522193 | Not specified | RECRUITING | Dumping Syndrome and Esophageal Atresia |
| NCT04901546 | Not specified | COMPLETED | Esophageal Atresia: a Natural Experiment of the Effects of Oral Inoculation on the Gut Microbiome |
| NCT04932746 | Not specified | COMPLETED | The Effect of Dexmedetomidine on Oxygen During One Lung Ventilation in Pediatric Surgery. |
| NCT05129930 | Not specified | COMPLETED | Fluid Overload and Pulmonary Function |
| NCT05527873 | Not specified | COMPLETED | Respiratory Complications of Operated Esophageal Atresia in Children |
| NCT05995171 | Not specified | RECRUITING | Long Term Outcome of Easophageal Atresia : Transmics Profiles in Adolescence |
| NCT06073158 | Not specified | COMPLETED | Molecular Signatures of Esophageal Atresia |
| NCT06208449 | Not specified | UNKNOWN | Robotic Versus Thoracoscopy Versus Thoracotomy Repair for Congenital Esophageal Atresia |
| NCT06335862 | Not specified | ENROLLING_BY_INVITATION | Primary Posterior Tracheopexy Prevents Tracheal Collapse |
| NCT06731855 | Not specified | RECRUITING | An Exploratory Physiological Study of Post-operative Recovery in Surgical Neonates and Dimethylarginine:Arginine Levels |
| NCT06860919 | Not specified | RECRUITING | Prospective Evaluation of the Results of Multidisciplinary Follow-up After a Transitional Consultation for Esophageal Atresia |
| NCT06975982 | Not specified | RECRUITING | Symptoms, Pulmonary Function, Muscle Strength, Exercise Capacity, and Frailty in Esophageal Atresia vs. Healthy Peers |
| NCT07100379 | Not specified | RECRUITING | Balloon Inflation Time for Esophageal Strictures (BITES): A Randomized Multi-Center Study |
| NCT07210736 | Not specified | NOT_YET_RECRUITING | Brazilian Multicenter Study on Esophageal Atresia |
| NCT03223480 | PHASE2/PHASE3 | COMPLETED | EUS - Guided Balloon-occluded Gastrojejunostomy Bypass |
| NCT01139853 | EARLY_PHASE1 | COMPLETED | Post-Operative Impact of Nasogastric Tubes on Rates of Emesis in Infants Diagnosed With Pyloric Stenosis |
Related Atlas pages
- Associated diseases: familial congenital nasolacrimal duct obstruction
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): esophageal atresia, familial congenital nasolacrimal duct obstruction, myoepithelial tumor, pyloric stenosis