IGSF8
gene geneOn this page
Also known as CD81P3EWI2PGRLCD316
Summary
IGSF8 (immunoglobulin superfamily member 8, HGNC:17813) is a protein-coding gene on chromosome 1q23.2, encoding Immunoglobulin superfamily member 8 (Q969P0). Member of the immunoglobulin superfamily (IgSF) that links tetraspanin-enriched microdomains to the actin cytoskeleton and plays several important roles in innate and adaptive immunity.
This gene encodes a member the EWI subfamily of the immunoglobulin protein superfamily. Members of this family contain a single transmembrane domain, an EWI (Glu-Trp-Ile)-motif and a variable number of immunoglobulin domains. This protein interacts with the tetraspanins CD81 and CD9 and may regulate their role in certain cellular functions including cell migration and viral infection. The encoded protein may also function as a tumor suppressor by inhibiting the proliferation of certain cancers. Alternate splicing results in multiple transcript variants that encode the same protein.
Source: NCBI Gene 93185 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 129 total
- MANE Select transcript:
NM_052868
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17813 |
| Approved symbol | IGSF8 |
| Name | immunoglobulin superfamily member 8 |
| Location | 1q23.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CD81P3, EWI2, PGRL, CD316 |
| Ensembl gene | ENSG00000162729 |
| Ensembl biotype | protein_coding |
| OMIM | 606644 |
| Entrez | 93185 |
Gene structure
Transcript identifiers
Ensembl transcripts: 23 — 22 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000314485, ENST00000368086, ENST00000448417, ENST00000460351, ENST00000614243, ENST00000883984, ENST00000883985, ENST00000883986, ENST00000883987, ENST00000883988, ENST00000883989, ENST00000883990, ENST00000883991, ENST00000918089, ENST00000918090, ENST00000918091, ENST00000918092, ENST00000918093, ENST00000918094, ENST00000918095, ENST00000942049, ENST00000942050, ENST00000942051
RefSeq mRNA: 3 — MANE Select: NM_052868
NM_001206665, NM_001320247, NM_052868
CCDS: CCDS1195
Canonical transcript exons
ENST00000314485 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001068019 | 160094869 | 160095246 |
| ENSE00001068024 | 160092924 | 160093331 |
| ENSE00001347776 | 160092282 | 160092695 |
| ENSE00001411208 | 160091808 | 160091938 |
| ENSE00001823566 | 160091343 | 160091608 |
| ENSE00003786642 | 160093710 | 160094171 |
| ENSE00003850938 | 160098409 | 160098619 |
Expression profiles
Bgee: expression breadth ubiquitous, 217 present calls, max score 98.73.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 17.4694 / max 284.1488, expressed in 1766 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 15470 | 11.9343 | 1747 |
| 15467 | 3.4273 | 1152 |
| 15469 | 1.5692 | 777 |
| 15471 | 0.1940 | 79 |
| 15472 | 0.1498 | 64 |
| 15473 | 0.1264 | 58 |
| 15468 | 0.0685 | 8 |
Top tissues by expression
252 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 98.73 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.53 | gold quality |
| right frontal lobe | UBERON:0002810 | 98.43 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.41 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 98.34 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 98.28 | gold quality |
| prefrontal cortex | UBERON:0000451 | 97.70 | gold quality |
| cerebellum | UBERON:0002037 | 97.31 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 97.20 | gold quality |
| spinal cord | UBERON:0002240 | 97.16 | gold quality |
| putamen | UBERON:0001874 | 96.31 | gold quality |
| hypothalamus | UBERON:0001898 | 96.29 | gold quality |
| frontal cortex | UBERON:0001870 | 96.17 | gold quality |
| frontal lobe | UBERON:0016525 | 96.17 | gold quality |
| amygdala | UBERON:0001876 | 96.16 | gold quality |
| nucleus accumbens | UBERON:0001882 | 96.16 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 96.16 | gold quality |
| caudate nucleus | UBERON:0001873 | 95.87 | gold quality |
| neocortex | UBERON:0001950 | 95.64 | gold quality |
| cortical plate | UBERON:0005343 | 94.98 | gold quality |
| popliteal artery | UBERON:0002250 | 94.47 | gold quality |
| tibial artery | UBERON:0007610 | 94.45 | gold quality |
| cerebral cortex | UBERON:0000956 | 94.31 | gold quality |
| brain | UBERON:0000955 | 94.24 | gold quality |
| forebrain | UBERON:0001890 | 94.09 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 94.06 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 93.81 | gold quality |
| aorta | UBERON:0000947 | 93.74 | gold quality |
| Ammon’s horn | UBERON:0001954 | 93.68 | gold quality |
| substantia nigra | UBERON:0002038 | 93.41 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-114 | yes | 12.55 |
| E-ANND-3 | yes | 4.89 |
| E-GEOD-36552 | no | 56.03 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
36 targeting IGSF8, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-1273H-5P | 99.77 | 66.32 | 2471 |
| HSA-MIR-2116-3P | 99.74 | 64.32 | 889 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-30B-3P | 99.70 | 65.76 | 2325 |
| HSA-MIR-3689A-3P | 99.70 | 65.73 | 2306 |
| HSA-MIR-3689B-3P | 99.70 | 65.71 | 2311 |
| HSA-MIR-3689C | 99.70 | 65.71 | 2311 |
| HSA-MIR-6779-5P | 99.70 | 65.76 | 2363 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-7106-5P | 99.53 | 67.47 | 3574 |
| HSA-MIR-4696 | 99.48 | 67.48 | 1040 |
| HSA-MIR-6799-5P | 99.14 | 65.72 | 2093 |
Literature-anchored findings (GeneRIF, showing 18)
- EWI2/PGRL associates with the metastasis suppressor KAI1/CD82 and inhibits the migration of prostate cancer cells. (PMID:12750295)
- EWI-2-dependent reorganization of alpha4beta1-CD81 complexes on the cell surface is responsible for EWI-2 effects on integrin-dependent morphology and motility functions (PMID:15070678)
- EWI proteins EWI-2 and EWI-F, alpha3beta1 and alpha6beta4 integrins, and protein palmitoylation have contrasting effects on cell surface CD9 organization (PMID:16537545)
- EWI-2 and EWI-F link the tetraspanin web to the actin cytoskeleton through their direct association with ezrin-radixin-moesin proteins (PMID:16690612)
- Important functions of recently activated dendritic cells are thus critically modulated by the newly discovered HSPA8-EWI-2 interaction. (PMID:17785435)
- CD81 partner EWI-2wint inhibits hepatitis C virus entry [EWI-2wint] (PMID:18382656)
- EWI-2 causes a substantial molecular reorganization of multiple molecules known to affect proliferation and/or invasion of astrocytes and/or glioblastomas. (PMID:19107234)
- analysis of interacting regions of CD81 and two of its partners, EWI-2 and EWI-2wint, and their effect on hepatitis C virus infection (PMID:21343309)
- A protein encoded by this locus was found to be differentially expressed in postmortem brains from patients with atypical frontotemporal lobar degeneration. (PMID:22360420)
- The EWI-2/alpha-actinin complex is involved in regulation of the actin cytoskeleton at T cell immune and virological synapses, providing a link between membrane microdomains and the formation of polarized membrane structures involved in T cell recognition. (PMID:22689882)
- Authors demonstrated that EWI-2wint promotes CD81 clustering and confinement in CD81-enriched areas. (PMID:23351194)
- EWI-2 negatively regulates TGF-beta signaling and its downstream events including cytostasis (in vitro and in vivo), EMT-like changes, cell migration, CD271-dependent invasion, and lung metastasis (in vivo). (PMID:25656846)
- EWI-2 Inhibits Cell-Cell Fusion at the HIV-1 Virological Presynapse. (PMID:31757023)
- EWI-2 controls nucleocytoplasmic shuttling of EGFR signaling molecules and miRNA sorting in exosomes to inhibit prostate cancer cell metastasis. (PMID:33605506)
- EWI2 promotes endolysosome-mediated turnover of growth factor receptors and integrins to suppress lung cancer. (PMID:35339615)
- EWI2 prevents EGFR from clustering and endocytosis to reduce tumor cell movement and proliferation. (PMID:35773608)
- EWI2 and its relatives in Tetraspanin-enriched membrane domains regulate malignancy. (PMID:36788350)
- IGSF8 is an innate immune checkpoint and cancer immunotherapy target. (PMID:38657602)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | igsf8 | ENSDARG00000038467 |
| mus_musculus | Igsf8 | ENSMUSG00000038034 |
| rattus_norvegicus | Igsf8 | ENSRNOG00000007604 |
Paralogs (5): PTGFRN (ENSG00000134247), CD101 (ENSG00000134256), IGSF3 (ENSG00000143061), VSTM4 (ENSG00000165633), VSTM2A (ENSG00000170419)
Protein
Protein identifiers
Immunoglobulin superfamily member 8 — Q969P0 (reviewed: Q969P0)
Alternative names: CD81 partner 3, Glu-Trp-Ile EWI motif-containing protein 2, Keratinocytes-associated transmembrane protein 4, LIR-D1, Prostaglandin regulatory-like protein
All UniProt accessions (2): C9J8Z4, Q969P0
UniProt curated annotations — full annotation on UniProt →
Function. Member of the immunoglobulin superfamily (IgSF) that links tetraspanin-enriched microdomains to the actin cytoskeleton and plays several important roles in innate and adaptive immunity. Acts as an inducible receptor of HSPA8 on dendritic cells to enhance the CCL21/SLC-dependent migration of activated mature dendritic cells while attenuating their antigen-specific stimulatory capacities. In complex with alpha-actinins ACTN1 and ACTN4, regulates actin dynamics in the immune synapse and subsequent T-cell activation. Inhibits the entry of several viruses such as hepatitis C Virus (HCV) or HIV-1. Mechanistically, promotes a change in CD81 organization at the plasma membrane by significantly restricting its diffusion which in turn influences CD81 interaction with Claudin-1/CLDN1, preventing CLDN1 from acting as a co-receptor required for HCV entry. Accumulates at the presynaptic terminal, the producer cell side of the virological synapse, to prevent HIV-1 Env-mediated cell-cell fusion. Highly expressed on malignant cells with antigen presentation defects, interacts with NK receptor KIR3DL2 to suppress NK-cell cytotoxicity. May participate in the regulation of neurite outgrowth and maintenance of the neural network in the adult brain.
Subunit / interactions. Interacts directly with CD82, CD81/tetraspanin-28 and CD9/tetraspanin-29. Also interacts with integrin alpha-3/beta-1 and integrin alpha-4/beta-1. Interacts with HSPA8; this interaction modulates migratory and antigen-presenting capacities of dendritic cells.
Subcellular location. Cell membrane.
Tissue specificity. Expressed in brain, kidney, testis, liver and placenta with moderate expression in all other tissues. Detected on a majority of B-cells, T-cells, and natural killer cells. Expressed on dendritic cells.
Domain organisation. The Ig-like C2-type domains 3 and 4 are required for interaction with CD81. The short cytoplasmic domain is very basic, interacts with membrane PIPs, and mediates plasma membrane localization.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q969P0-1 | 1 | yes |
| Q969P0-2 | 2 | |
| Q969P0-3 | 3 |
RefSeq proteins (3): NP_001193594, NP_001307176, NP_443100* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003599 | Ig_sub | Domain |
| IPR007110 | Ig-like_dom | Domain |
| IPR013106 | Ig_V-set | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR051102 | IgSF_V-set/TM_domain | Family |
Pfam: PF07686
UniProt features (26 total): disulfide bond 4, domain 4, glycosylation site 3, splice variant 3, lipid moiety-binding region 2, topological domain 2, sequence conflict 2, signal peptide 1, chain 1, short sequence motif 1, modified residue 1, transmembrane region 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q969P0-F1 | 88.24 | 0.66 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 518, 604, 605
Disulfide bonds (4): 49–127, 186–270, 326–406, 462–544
Glycosylation sites (3): 50, 327, 463
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 114 (showing top):
GOBP_SINGLE_FERTILIZATION, GOBP_MUSCLE_TISSUE_DEVELOPMENT, MYOGENIN_Q6, GCANCTGNY_MYOD_Q6, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, EFC_Q6, GOBP_MUSCLE_STRUCTURE_DEVELOPMENT, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM1, NF1_Q6_01, GOBP_SKELETAL_MUSCLE_ORGAN_DEVELOPMENT, TGANTCA_AP1_C, E12_Q6, GOBP_FERTILIZATION, CUI_TCF21_TARGETS_2_UP, MILI_PSEUDOPODIA_CHEMOTAXIS_DN
GO Biological Process (6): single fertilization (GO:0007338), nervous system development (GO:0007399), skeletal muscle tissue development (GO:0007519), positive regulation of cell migration (GO:0030335), cell motility (GO:0048870), regulation of cell motility (GO:2000145)
GO Molecular Function (2): signaling receptor activity (GO:0038023), protein binding (GO:0005515)
GO Cellular Component (5): plasma membrane (GO:0005886), membrane (GO:0016020), presynaptic membrane (GO:0042734), extracellular exosome (GO:0070062), hippocampal mossy fiber to CA3 synapse (GO:0098686)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| fertilization | 1 |
| system development | 1 |
| striated muscle tissue development | 1 |
| skeletal muscle organ development | 1 |
| cell migration | 1 |
| regulation of cell migration | 1 |
| positive regulation of cell motility | 1 |
| cellular process | 1 |
| regulation of locomotion | 1 |
| cell motility | 1 |
| regulation of cellular process | 1 |
| molecular transducer activity | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
| synaptic membrane | 1 |
| presynapse | 1 |
| extracellular vesicle | 1 |
| thorny excrescence | 1 |
| neuron to neuron synapse | 1 |
| hippocampal mossy fiber expansion | 1 |
Protein interactions and networks
STRING
784 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| IGSF8 | CD9 | P21926 | 997 |
| IGSF8 | CD81 | P18582 | 995 |
| IGSF8 | B4E171 | B4E171 | 937 |
| IGSF8 | CD82 | P27701 | 840 |
| IGSF8 | EZR | P15311 | 693 |
| IGSF8 | RDX | P35241 | 677 |
| IGSF8 | MSN | P26038 | 631 |
| IGSF8 | CD151 | P48509 | 582 |
| IGSF8 | ITGA3 | P26006 | 504 |
| IGSF8 | HSPA8 | P11142 | 499 |
| IGSF8 | ACTN4 | O43707 | 490 |
| IGSF8 | EGFR | P00533 | 478 |
| IGSF8 | STOM | P27105 | 476 |
| IGSF8 | ITGA4 | P13612 | 465 |
| IGSF8 | CD63 | P08962 | 452 |
IntAct
101 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TSPAN15 | ADAM10 | psi-mi:“MI:0914”(association) | 0.840 |
| TSPAN5 | ADAM10 | psi-mi:“MI:0914”(association) | 0.800 |
| CD9 | IGSF8 | psi-mi:“MI:0914”(association) | 0.760 |
| CD9 | ADAM10 | psi-mi:“MI:0914”(association) | 0.750 |
| ADAM10 | CD9 | psi-mi:“MI:0914”(association) | 0.750 |
| IGSF8 | KRTAP10-7 | psi-mi:“MI:0915”(physical association) | 0.720 |
| IGSF8 | KRTAP10-8 | psi-mi:“MI:0915”(physical association) | 0.720 |
| KRTAP10-7 | IGSF8 | psi-mi:“MI:0915”(physical association) | 0.720 |
| KRTAP10-8 | IGSF8 | psi-mi:“MI:0915”(physical association) | 0.720 |
| IGSF8 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| KRTAP10-4 | IGSF8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| IGSF8 | KRTAP10-9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| IGSF8 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| KRTAP10-9 | IGSF8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP1-1 | IGSF8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| IGSF8 | KRTAP2-4 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (275): KRTAP10-4 (Two-hybrid), KRTAP10-7 (Two-hybrid), KRTAP10-9 (Two-hybrid), KRTAP10-8 (Two-hybrid), KRTAP10-3 (Two-hybrid), EIF2B5 (Affinity Capture-MS), HADHB (Affinity Capture-MS), TMEM160 (Affinity Capture-MS), EIF2B4 (Affinity Capture-MS), TBRG4 (Affinity Capture-MS), DNM3 (Affinity Capture-MS), CD9 (Affinity Capture-MS), EIF2B2 (Affinity Capture-MS), DNAJC14 (Affinity Capture-MS), ADPRHL2 (Affinity Capture-MS)
ESM2 similar proteins: A4FV98, A5D7B1, A5PK51, A6QLN9, A8MUP2, D3ZVU9, O15527, O35595, O75078, O95848, P57775, Q05B60, Q06643, Q14728, Q14CX5, Q1LZB9, Q27HK4, Q2T9T5, Q2TBS1, Q3UGX3, Q4R3I0, Q4V892, Q58CT4, Q5E9H2, Q5RCI5, Q5SUV1, Q5TM22, Q642A6, Q6IA17, Q6PCB0, Q6XQN6, Q862Z7, Q8N8L6, Q8R2R5, Q8R2Z5, Q8R366, Q8WUG5, Q95JH0, Q95JH2, Q969P0
Diamond homologs: A0JPB1, A8E0Y8, O75054, Q5U5A3, Q6ZQA6, Q8R366, Q93033, Q969P0, Q62786, Q9P2B2, Q9WV91
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 76 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Keratinization | 10 | 10.5× | 7e-06 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
129 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 106 |
| Likely benign | 1 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1161 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:160091939:C:CC | acceptor_gain | 1.0000 |
| 1:160092693:CAC:C | acceptor_gain | 1.0000 |
| 1:160092694:ACCT:A | acceptor_loss | 1.0000 |
| 1:160092696:CTGC:C | acceptor_loss | 1.0000 |
| 1:160092697:T:G | acceptor_loss | 1.0000 |
| 1:160091934:CAGGG:C | acceptor_gain | 0.9900 |
| 1:160091936:GGG:G | acceptor_gain | 0.9900 |
| 1:160091936:GGGC:G | acceptor_loss | 0.9900 |
| 1:160091937:GGCT:G | acceptor_loss | 0.9900 |
| 1:160091938:GC:G | acceptor_loss | 0.9900 |
| 1:160091939:CTGG:C | acceptor_loss | 0.9900 |
| 1:160091940:T:A | acceptor_loss | 0.9900 |
| 1:160092276:ACTC:A | donor_loss | 0.9900 |
| 1:160092277:CTCA:C | donor_loss | 0.9900 |
| 1:160092278:TCA:T | donor_loss | 0.9900 |
| 1:160092279:CACCA:C | donor_loss | 0.9900 |
| 1:160092280:A:C | donor_loss | 0.9900 |
| 1:160092281:C:CA | donor_loss | 0.9900 |
| 1:160092281:CCATG:C | donor_gain | 0.9900 |
| 1:160092691:CACAC:C | acceptor_gain | 0.9900 |
| 1:160092696:C:CC | acceptor_gain | 0.9900 |
| 1:160092926:T:TA | donor_gain | 0.9900 |
| 1:160093328:CTGG:C | acceptor_gain | 0.9900 |
| 1:160093329:TGG:T | acceptor_gain | 0.9900 |
| 1:160093708:A:AC | donor_gain | 0.9900 |
| 1:160093709:C:CC | donor_gain | 0.9900 |
| 1:160093709:CA:C | donor_gain | 0.9900 |
| 1:160093709:CACA:C | donor_gain | 0.9900 |
| 1:160093709:CACAG:C | donor_gain | 0.9900 |
| 1:160094867:A:AG | donor_loss | 0.9900 |
AlphaMissense
3824 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:160093201:C:A | W345C | 1.000 |
| 1:160093201:C:G | W345C | 1.000 |
| 1:160093019:C:G | C406S | 0.999 |
| 1:160093020:A:G | C406R | 0.999 |
| 1:160093020:A:T | C406S | 0.999 |
| 1:160093026:A:C | Y404D | 0.999 |
| 1:160093203:A:G | W345R | 0.999 |
| 1:160093203:A:T | W345R | 0.999 |
| 1:160093259:C:G | C326S | 0.999 |
| 1:160093259:C:T | C326Y | 0.999 |
| 1:160093260:A:T | C326S | 0.999 |
| 1:160093018:G:C | C406W | 0.998 |
| 1:160093019:C:T | C406Y | 0.998 |
| 1:160093258:G:C | C326W | 0.998 |
| 1:160093259:C:A | C326F | 0.998 |
| 1:160093260:A:G | C326R | 0.998 |
| 1:160093812:A:C | Y268D | 0.998 |
| 1:160094931:C:G | C127S | 0.998 |
| 1:160094932:A:T | C127S | 0.998 |
| 1:160092623:C:G | C462S | 0.997 |
| 1:160092624:A:T | C462S | 0.997 |
| 1:160093026:A:T | Y404N | 0.997 |
| 1:160093064:A:G | L391P | 0.997 |
| 1:160093202:C:G | W345S | 0.997 |
| 1:160093805:C:G | C270S | 0.997 |
| 1:160093806:A:T | C270S | 0.997 |
| 1:160094057:C:G | C186S | 0.997 |
| 1:160094058:A:T | C186S | 0.997 |
| 1:160092384:A:C | Y542D | 0.996 |
| 1:160092623:C:T | C462Y | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000792721 (1:160101259 CACACACAG>C), RS1000863795 (1:160095448 C>T), RS1000947679 (1:160099510 G>A), RS1001086451 (1:160093747 T>C), RS1001623096 (1:160095825 G>A), RS1001751076 (1:160096755 T>G), RS1001953466 (1:160097425 C>A), RS1002256293 (1:160097701 T>C), RS1002469964 (1:160091955 G>T), RS1003217770 (1:160098730 G>C), RS1003592769 (1:160091740 C>G), RS1003721604 (1:160096080 G>A,C,T), RS1004742509 (1:160100495 C>A,T), RS1005082624 (1:160101027 G>C,T), RS1005273634 (1:160098708 T>A,C)
Disease associations
OMIM: gene MIM:606644 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
29 total (human), top 29 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases expression | 2 |
| Cyclosporine | decreases expression, decreases methylation | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| titanium dioxide | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | decreases expression | 1 |
| 3-(2-hydroxy-4-(2-methylnonan-2-yl)phenyl)cyclohexan-1-ol | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Amiodarone | increases expression | 1 |
| Vehicle Emissions | decreases expression, increases abundance | 1 |
| Cisplatin | increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Environmental Pollutants | affects expression | 1 |
| Estradiol | increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Silicon Dioxide | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Thiram | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Valproic Acid | increases expression | 1 |
| 1-Methyl-4-phenylpyridinium | increases expression | 1 |
| Gold Compounds | increases expression | 1 |
| Genistein | increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.