IGSF9B
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Also known as KIAA1030LINC00947LOC283174
Summary
IGSF9B (immunoglobulin superfamily member 9B, HGNC:32326) is a protein-coding gene on chromosome 11q25, encoding Protein turtle homolog B (Q9UPX0). Transmembrane protein which is abundantly expressed in interneurons, where it may regulate inhibitory synapse development.
Predicted to enable kinase binding activity. Predicted to be involved in synaptic membrane adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules and positive regulation of inhibitory postsynaptic potential. Predicted to be located in dendrite; inhibitory synapse; and neuronal cell body. Predicted to be active in GABA-ergic synapse; neuron projection; and postsynaptic specialization of symmetric synapse.
Source: NCBI Gene 22997 — RefSeq curated summary.
At a glance
- GWAS associations: 20
- Clinical variants (ClinVar): 37 total — 1 pathogenic
- MANE Select transcript:
NM_001277285
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:32326 |
| Approved symbol | IGSF9B |
| Name | immunoglobulin superfamily member 9B |
| Location | 11q25 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1030, LINC00947, LOC283174 |
| Ensembl gene | ENSG00000080854 |
| Ensembl biotype | protein_coding |
| OMIM | 613773 |
| Entrez | 22997 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 4 protein_coding, 2 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000321016, ENST00000526663, ENST00000527648, ENST00000530957, ENST00000533160, ENST00000533871, ENST00000564347
RefSeq mRNA: 1 — MANE Select: NM_001277285
NM_001277285
CCDS: CCDS61010
Canonical transcript exons
ENST00000533871 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000749102 | 133924820 | 133924904 |
| ENSE00001195000 | 133937810 | 133937961 |
| ENSE00001303640 | 133919742 | 133921397 |
| ENSE00001305564 | 133922569 | 133922730 |
| ENSE00001330226 | 133922177 | 133922222 |
| ENSE00001464611 | 133944220 | 133944366 |
| ENSE00001464612 | 133946061 | 133946258 |
| ENSE00001559691 | 133956691 | 133956968 |
| ENSE00003696918 | 133929671 | 133929782 |
| ENSE00003696945 | 133936053 | 133936194 |
| ENSE00003698548 | 133935617 | 133935762 |
| ENSE00003698866 | 133911886 | 133912007 |
| ENSE00003700209 | 133932071 | 133932213 |
| ENSE00003700669 | 133931453 | 133931569 |
| ENSE00003700678 | 133930984 | 133931134 |
| ENSE00003701640 | 133926916 | 133927091 |
| ENSE00003702105 | 133931655 | 133931795 |
| ENSE00003702163 | 133937376 | 133937493 |
| ENSE00003702420 | 133925739 | 133925965 |
| ENSE00003755277 | 133896438 | 133909277 |
Expression profiles
Bgee: expression breadth ubiquitous, 183 present calls, max score 94.19.
FANTOM5 (CAGE): breadth broad, TPM avg 2.7744 / max 176.7867, expressed in 679 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 123252 | 2.1856 | 631 |
| 123247 | 0.3229 | 125 |
| 123251 | 0.0956 | 48 |
| 123241 | 0.0691 | 23 |
| 123246 | 0.0471 | 13 |
| 123248 | 0.0283 | 8 |
| 123249 | 0.0259 | 13 |
Top tissues by expression
242 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 94.19 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 94.02 | gold quality |
| cerebellar cortex | UBERON:0002129 | 93.97 | gold quality |
| cerebellum | UBERON:0002037 | 93.91 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 91.25 | gold quality |
| lower esophagus | UBERON:0013473 | 91.16 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 90.98 | gold quality |
| cerebellar vermis | UBERON:0004720 | 90.88 | gold quality |
| right coronary artery | UBERON:0001625 | 89.60 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 89.43 | gold quality |
| popliteal artery | UBERON:0002250 | 89.20 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 89.19 | gold quality |
| tibial artery | UBERON:0007610 | 89.16 | gold quality |
| aorta | UBERON:0000947 | 88.67 | gold quality |
| mucosa of stomach | UBERON:0001199 | 88.65 | gold quality |
| thoracic aorta | UBERON:0001515 | 88.17 | gold quality |
| ascending aorta | UBERON:0001496 | 88.01 | gold quality |
| left coronary artery | UBERON:0001626 | 87.51 | gold quality |
| left uterine tube | UBERON:0001303 | 87.39 | gold quality |
| body of uterus | UBERON:0009853 | 87.02 | gold quality |
| coronary artery | UBERON:0001621 | 86.89 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 86.11 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 85.25 | gold quality |
| right uterine tube | UBERON:0001302 | 84.92 | gold quality |
| heart left ventricle | UBERON:0002084 | 83.44 | gold quality |
| cardiac ventricle | UBERON:0002082 | 83.11 | gold quality |
| cardiac atrium | UBERON:0002081 | 83.07 | gold quality |
| heart | UBERON:0000948 | 82.93 | gold quality |
| apex of heart | UBERON:0002098 | 82.91 | gold quality |
| right atrium auricular region | UBERON:0006631 | 82.80 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 827.90 |
| E-ANND-3 | no | 2.22 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
37 targeting IGSF9B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-3151-5P | 99.86 | 63.83 | 1069 |
| HSA-MIR-548AR-3P | 99.85 | 71.26 | 3889 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-765 | 99.84 | 68.24 | 2442 |
| HSA-MIR-548AZ-3P | 99.82 | 70.56 | 3549 |
| HSA-MIR-548BC | 99.82 | 70.61 | 3524 |
| HSA-MIR-548E-3P | 99.82 | 70.59 | 3514 |
| HSA-MIR-548F-3P | 99.82 | 70.59 | 3540 |
| HSA-MIR-548A-3P | 99.76 | 70.58 | 3524 |
| HSA-MIR-11181-3P | 99.75 | 66.38 | 2205 |
| HSA-MIR-4524A-3P | 99.72 | 66.85 | 2406 |
| HSA-MIR-3059-5P | 99.70 | 69.93 | 2491 |
| HSA-MIR-494-3P | 99.70 | 71.45 | 2795 |
| HSA-MIR-7-5P | 99.67 | 70.53 | 1809 |
| HSA-MIR-4472 | 99.56 | 66.08 | 1478 |
| HSA-MIR-3128 | 99.50 | 67.85 | 1258 |
| HSA-MIR-4426 | 99.17 | 66.74 | 1949 |
| HSA-MIR-491-5P | 99.13 | 65.98 | 1468 |
| HSA-MIR-1286 | 99.09 | 66.23 | 1046 |
| HSA-MIR-877-3P | 99.09 | 68.10 | 1637 |
| HSA-MIR-5000-3P | 98.79 | 65.63 | 1251 |
| HSA-MIR-12114 | 98.70 | 63.45 | 730 |
| HSA-MIR-4662B | 98.33 | 66.37 | 1163 |
| HSA-MIR-4647 | 98.30 | 66.41 | 1139 |
| HSA-MIR-6881-3P | 98.04 | 68.24 | 1777 |
Literature-anchored findings (GeneRIF, showing 5)
- The transcriptional level of MIR4697HG in cancerous tissues increased twofold compared with that in adjacent noncancerous tissues. MIR4697HG was differentially expressed in ovarian cancer cell lines, with the highest levels in OVCAR3 and SKOV3 cells. (PMID:28168162)
- Polymorphism in IGSF9B gene is associated with schizophrenia and bipolar disorder. (PMID:28786528)
- The Genetic variants located in IGSF9B has the potential to modulate disease course in MS patients and may be used as disease activity biomarkers to identify patients with divergent disease courses. (PMID:30217166)
- The role of cell adhesion molecule IgSF9b at the inhibitory synapse and psychiatric disease. (PMID:38029609)
- LncRNA MIR4697HG Alleviates Endothelial Cell Injury and Atherosclerosis Progression in Mice via the FUS/ANXA5 Axis. (PMID:38082058)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | igsf9bb | ENSDARG00000069467 |
| mus_musculus | Igsf9b | ENSMUSG00000034275 |
| rattus_norvegicus | Igsf9b | ENSRNOG00000009253 |
Paralogs (36): CNTN1 (ENSG00000018236), CDON (ENSG00000064309), NEO1 (ENSG00000067141), SDK2 (ENSG00000069188), IGSF9 (ENSG00000085552), NRCAM (ENSG00000091129), MXRA5 (ENSG00000101825), IGDCC4 (ENSG00000103742), CNTN3 (ENSG00000113805), IGSF21 (ENSG00000117154), CNTN6 (ENSG00000134115), CHL1 (ENSG00000134121), PTPRQ (ENSG00000139304), CNTN4 (ENSG00000144619), BOC (ENSG00000144857), SDK1 (ENSG00000146555), HMCN2 (ENSG00000148357), NCAM1 (ENSG00000149294), CNTN5 (ENSG00000149972), IGSF10 (ENSG00000152580), ROBO4 (ENSG00000154133), ROBO3 (ENSG00000154134), NCAM2 (ENSG00000154654), VCAM1 (ENSG00000162692), NFASC (ENSG00000163531), PRTG (ENSG00000166450), ROBO1 (ENSG00000169855), DSCAM (ENSG00000171587), IGDCC3 (ENSG00000174498), VSIG10 (ENSG00000176834), DSCAML1 (ENSG00000177103), CNTN2 (ENSG00000184144), ROBO2 (ENSG00000185008), VSIG10L (ENSG00000186806), DCC (ENSG00000187323), L1CAM (ENSG00000198910)
Protein
Protein identifiers
Protein turtle homolog B — Q9UPX0 (reviewed: Q9UPX0)
Alternative names: Immunoglobulin superfamily member 9B
All UniProt accessions (3): Q9UPX0, E9PRP3, H0YDP1
UniProt curated annotations — full annotation on UniProt →
Function. Transmembrane protein which is abundantly expressed in interneurons, where it may regulate inhibitory synapse development. May mediate homophilic cell adhesion. Is involved in the organization and maintenance of axon initial segment (AIS) architecture, likely cooperating with PRICKLE2 to regulate ANK3/ANKG localization to AIS.
Subunit / interactions. Found in a complex with MAGI2 and NLGN2, where it interacts with MAGI2 (via PDZ 5 and PDZ 6 domains). Interacts with PRICKLE2; the interaction is required for correct IGSF9B and ANK3/ANKG localization in axons.
Subcellular location. Postsynaptic cell membrane. Postsynaptic density. Cell projection. Axon.
Post-translational modifications. N-glycosylated and sialylated. Not significantly O-glycosylated.
Similarity. Belongs to the immunoglobulin superfamily. Turtle family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UPX0-1 | 1 | yes |
| Q9UPX0-2 | 2 |
RefSeq proteins (1): NP_001264214* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003598 | Ig_sub2 | Domain |
| IPR003599 | Ig_sub | Domain |
| IPR003961 | FN3_dom | Domain |
| IPR007110 | Ig-like_dom | Domain |
| IPR013106 | Ig_V-set | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036116 | FN3_sf | Homologous_superfamily |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR051170 | Neural/epithelial_adhesion | Family |
Pfam: PF00041, PF13895, PF13927
UniProt features (40 total): domain 7, compositionally biased region 7, modified residue 6, disulfide bond 5, region of interest 3, glycosylation site 3, topological domain 2, sequence variant 2, signal peptide 1, chain 1, transmembrane region 1, splice variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UPX0-F1 | 62.71 | 0.29 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (6): 775, 783, 794, 1136, 1207, 1215
Disulfide bonds (5): 45–113, 161–208, 250–303, 346–397, 442–488
Glycosylation sites (3): 241, 258, 624
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 125 (showing top):
MORF_RAGE, TGGTGCT_MIR29A_MIR29B_MIR29C, CAR_TNFRSF25, XU_GH1_AUTOCRINE_TARGETS_UP, AREB6_01, MEF2_02, MORF_FANCG, CAR_MYST2, HFH4_01, HFH3_01, CAR_MLANA, TATA_C, MORF_PML, GOCC_NEURON_PROJECTION, MORF_PDPK1
GO Biological Process (2): cell adhesion (GO:0007155), nervous system development (GO:0007399)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (7): postsynaptic density (GO:0014069), neuron projection (GO:0043005), postsynaptic membrane (GO:0045211), GABA-ergic synapse (GO:0098982), plasma membrane (GO:0005886), membrane (GO:0016020), synapse (GO:0045202)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular process | 1 |
| system development | 1 |
| binding | 1 |
| asymmetric synapse | 1 |
| postsynaptic specialization | 1 |
| plasma membrane bounded cell projection | 1 |
| synaptic membrane | 1 |
| postsynapse | 1 |
| synapse | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
828 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| IGSF9B | NLGN2 | Q8NFZ4 | 707 |
| IGSF9B | MAGI2 | Q86UL8 | 565 |
| IGSF9B | ELFN1 | P0C7U0 | 528 |
| IGSF9B | IGSF21 | Q96ID5 | 490 |
| IGSF9B | LHFPL4 | Q7Z7J7 | 464 |
| IGSF9B | GAD1 | Q99259 | 439 |
| IGSF9B | DLX1 | P56177 | 428 |
| IGSF9B | NRXN2 | Q9P2S2 | 425 |
| IGSF9B | NRXN1 | Q9ULB1 | 419 |
| IGSF9B | KCNC3 | Q14003 | 404 |
| IGSF9B | LHFPL3 | Q86UP9 | 399 |
| IGSF9B | LRRN4CL | Q8ND94 | 393 |
| IGSF9B | RBM46 | Q8TBY0 | 391 |
| IGSF9B | GRIN2B | Q13224 | 380 |
| IGSF9B | SLC32A1 | Q9H598 | 378 |
| IGSF9B | DLX5 | P56178 | 378 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| YAP1 | IGSF9B | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| IGSF9B | NEGR1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Prdm16 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| Mecom | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (8): IGSF9B (Affinity Capture-RNA), IGSF9B (Affinity Capture-MS), IGSF9B (Affinity Capture-MS), IGSF9B (Protein-peptide), IGSF9B (Affinity Capture-MS), IGSF9B (Affinity Capture-MS), IGSF9B (Affinity Capture-MS), IGSF9B (Affinity Capture-MS)
ESM2 similar proteins: D3ZB51, E9PZ19, M0RAS4, O60242, O60245, O70472, O75882, O94779, P13590, P13591, P13595, P13596, P15209, P24786, P31836, P51641, P68500, P78539, P97300, P97527, P97546, Q01973, Q03351, Q15223, Q16288, Q16620, Q5IFJ9, Q5IS37, Q5IS82, Q63604, Q63769, Q6A051, Q6AZB0, Q6GQT9, Q6P1D5, Q6VNS1, Q7TNR6, Q80T74, Q80ZF8, Q8R4I7
Diamond homologs: A4FUY1, A6QQC6, A8MVW5, D3YXG0, D3ZB51, D3ZQE1, E9PZ19, O08775, P13595, P13596, P16573, P31809, P35968, P52583, Q00889, Q14CZ8, Q3KPI0, Q4VAH7, Q52KR2, Q62845, Q640R3, Q69Z26, Q9D2Z1, Q9HBG7, Q9UPX0, A2AJ76, A6NDA9, O55005, O75962, P0C6S8, Q1LUA6, Q3SXY7, Q3URE9, Q4R8Y9, Q504C1, Q6GQU6, Q6PFC5, Q7L985, Q80X72, Q8K099
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
37 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 3 |
| Likely benign | 6 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 625595 | GRCh37/hg19 11q25(chr11:133325079-134157243) | Pathogenic |
SpliceAI
4842 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:133921394:CAAG:C | acceptor_gain | 1.0000 |
| 11:133921398:C:CC | acceptor_gain | 1.0000 |
| 11:133922175:A:AC | donor_gain | 1.0000 |
| 11:133922176:C:CC | donor_gain | 1.0000 |
| 11:133922564:CCCA:C | donor_loss | 1.0000 |
| 11:133922568:C:CA | donor_loss | 1.0000 |
| 11:133922589:CG:C | donor_gain | 1.0000 |
| 11:133922726:GATGT:G | acceptor_gain | 1.0000 |
| 11:133922727:ATGT:A | acceptor_gain | 1.0000 |
| 11:133922728:TGT:T | acceptor_gain | 1.0000 |
| 11:133922729:GT:G | acceptor_gain | 1.0000 |
| 11:133922731:C:CA | acceptor_loss | 1.0000 |
| 11:133922731:C:CC | acceptor_gain | 1.0000 |
| 11:133924914:C:CT | acceptor_gain | 1.0000 |
| 11:133925733:CCTCA:C | donor_loss | 1.0000 |
| 11:133925734:CTCA:C | donor_loss | 1.0000 |
| 11:133925735:TCAC:T | donor_loss | 1.0000 |
| 11:133925736:CAC:C | donor_loss | 1.0000 |
| 11:133925738:C:G | donor_loss | 1.0000 |
| 11:133925766:T:A | donor_gain | 1.0000 |
| 11:133925961:GAATG:G | acceptor_gain | 1.0000 |
| 11:133925963:ATG:A | acceptor_gain | 1.0000 |
| 11:133925964:TG:T | acceptor_gain | 1.0000 |
| 11:133925964:TGC:T | acceptor_loss | 1.0000 |
| 11:133925966:C:CA | acceptor_loss | 1.0000 |
| 11:133925966:C:CC | acceptor_gain | 1.0000 |
| 11:133925970:G:T | acceptor_gain | 1.0000 |
| 11:133925972:C:CT | acceptor_gain | 1.0000 |
| 11:133925973:G:T | acceptor_gain | 1.0000 |
| 11:133926912:TCACC:T | donor_loss | 1.0000 |
AlphaMissense
9259 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:133922627:G:C | S741R | 1.000 |
| 11:133922627:G:T | S741R | 1.000 |
| 11:133922629:T:G | S741R | 1.000 |
| 11:133922656:A:G | C732R | 1.000 |
| 11:133924885:C:G | R685P | 1.000 |
| 11:133925873:A:G | W634R | 1.000 |
| 11:133925873:A:T | W634R | 1.000 |
| 11:133926978:A:T | V582D | 1.000 |
| 11:133926984:A:G | F580S | 1.000 |
| 11:133929717:A:G | W529R | 1.000 |
| 11:133929717:A:T | W529R | 1.000 |
| 11:133930995:A:G | L503P | 1.000 |
| 11:133931027:G:C | N492K | 1.000 |
| 11:133931027:G:T | N492K | 1.000 |
| 11:133931034:G:T | A490D | 1.000 |
| 11:133931039:A:C | C488W | 1.000 |
| 11:133931040:C:G | C488S | 1.000 |
| 11:133931041:A:G | C488R | 1.000 |
| 11:133931041:A:T | C488S | 1.000 |
| 11:133931045:C:A | W486C | 1.000 |
| 11:133931045:C:G | W486C | 1.000 |
| 11:133931047:A:G | W486R | 1.000 |
| 11:133931047:A:T | W486R | 1.000 |
| 11:133931459:C:A | W454C | 1.000 |
| 11:133931459:C:G | W454C | 1.000 |
| 11:133931461:A:G | W454R | 1.000 |
| 11:133931461:A:T | W454R | 1.000 |
| 11:133931472:G:T | P450H | 1.000 |
| 11:133931485:C:A | G446W | 1.000 |
| 11:133931495:A:C | C442W | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000047841 (11:133935404 C>T), RS1000081660 (11:133907032 C>G), RS1000113208 (11:133916409 G>A), RS1000148936 (11:133899044 C>A,G), RS1000171208 (11:133950107 G>A), RS1000229479 (11:133916098 C>T), RS1000309837 (11:133938354 C>T), RS1000338923 (11:133955147 G>A), RS1000341360 (11:133920591 A>G), RS1000368236 (11:133898877 G>A,C,T), RS1000511863 (11:133915392 C>CCAA), RS1000520319 (11:133934860 G>A,C), RS1000540056 (11:133951069 G>A), RS1000563541 (11:133917147 G>A,T), RS1000606851 (11:133949839 G>A)
Disease associations
OMIM: gene MIM:613773 | disease phenotypes: MIM:147791
GenCC curated gene-disease
Mondo (1): Jacobsen syndrome (MONDO:0007838)
Orphanet (1): Jacobsen syndrome (Orphanet:2308)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
20 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_866 | Obesity-related traits | 1.000000e-06 |
| GCST002539_12 | Schizophrenia | 4.000000e-11 |
| GCST002981_3 | Longitudinal alcohol consumption | 5.000000e-07 |
| GCST003720_11 | Migraine | 3.000000e-08 |
| GCST004521_133 | Autism spectrum disorder or schizophrenia | 2.000000e-09 |
| GCST004946_25 | Schizophrenia | 9.000000e-13 |
| GCST005235_2 | Hand grip strength | 3.000000e-08 |
| GCST006803_19 | Schizophrenia | 5.000000e-14 |
| GCST006940_159 | Neurociticism | 3.000000e-08 |
| GCST006950_6 | Feeling worry | 4.000000e-09 |
| GCST007201_128 | Schizophrenia | 1.000000e-12 |
| GCST007201_157 | Schizophrenia | 2.000000e-11 |
| GCST008477_20 | Emphysema annual change measurement in smokers (adjusted lung density) | 9.000000e-06 |
| GCST008522_4 | Bitter alcoholic beverage consumption | 3.000000e-08 |
| GCST008595_112 | Cognitive ability, years of educational attainment or schizophrenia (pleiotropy) | 2.000000e-10 |
| GCST008757_39 | Alcohol consumption | 3.000000e-09 |
| GCST009325_7 | Parkinson’s disease or first degree relation to individual with Parkinson’s disease | 6.000000e-20 |
| GCST009600_134 | Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy) | 6.000000e-10 |
| GCST010988_508 | Adult body size | 2.000000e-10 |
| GCST010991_12 | Parkinson’s disease | 7.000000e-09 |
EFO canonical traits (9, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005116 | urinary metabolite measurement |
| EFO:0007645 | longitudinal alcohol consumption measurement |
| EFO:0006941 | grip strength measurement |
| EFO:0007660 | neuroticism measurement |
| EFO:0009589 | worry measurement |
| EFO:0007626 | emphysema imaging measurement |
| EFO:0010092 | bitter alcoholic beverage consumption measurement |
| EFO:0004337 | intelligence |
| EFO:0004784 | self reported educational attainment |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases methylation | 2 |
| Aflatoxin B1 | increases methylation | 2 |
| FR900359 | increases phosphorylation | 1 |
| Esketamine | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases abundance, increases methylation | 1 |
| sodium arsenite | affects methylation | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| bisphenol S | decreases methylation | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | affects methylation, increases methylation | 1 |
| Carbamazepine | affects expression | 1 |
| Cisplatin | increases expression, affects cotreatment | 1 |
| Diethylhexyl Phthalate | increases abundance, increases methylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Estradiol | increases expression | 1 |
| Lead | affects expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Silicon Dioxide | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Vanadium | increases abundance, increases methylation | 1 |
| Propofol | decreases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
| Metals, Heavy | increases abundance, increases methylation | 1 |
| Cadmium Chloride | increases expression | 1 |
Clinical trials (associated diseases)
1 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04463316 | Not specified | RECRUITING | GROWing Up With Rare GENEtic Syndromes |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Jacobsen syndrome, migraine disorder