IK
gene geneOn this page
Also known as REDRER
Summary
IK (IK cytokine, HGNC:5958) is a protein-coding gene on chromosome 5q31.3, encoding Protein Red (Q13123). Involved in pre-mRNA splicing as a component of the spliceosome. It is a common-essential gene (DepMap: required in 99.9% of cancer cell lines).
The protein encoded by this gene was identified by its RED repeat, a stretch of repeated arginine, glutamic acid and aspartic acid residues. The protein localizes to discrete dots within the nucleus, excluding the nucleolus. Its function is unknown. This gene maps to chromosome 5; however, a pseudogene may exist on chromosome 2.
Source: NCBI Gene 3550 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 84 total
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 99.9% of screened cell lines (common-essential)
- MANE Select transcript:
NM_006083
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:5958 |
| Approved symbol | IK |
| Name | IK cytokine |
| Location | 5q31.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RED, RER |
| Ensembl gene | ENSG00000113141 |
| Ensembl biotype | protein_coding |
| OMIM | 600549 |
| Entrez | 3550 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 6 protein_coding, 3 retained_intron, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000417647, ENST00000502899, ENST00000503332, ENST00000507593, ENST00000508301, ENST00000512827, ENST00000513256, ENST00000515015, ENST00000515592, ENST00000523672, ENST00000947150
RefSeq mRNA: 1 — MANE Select: NM_006083
NM_006083
CCDS: CCDS47280
Canonical transcript exons
ENST00000417647 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001127945 | 140654516 | 140654586 |
| ENSE00001127951 | 140653938 | 140654052 |
| ENSE00001193801 | 140652977 | 140653144 |
| ENSE00001342828 | 140662302 | 140662480 |
| ENSE00002039967 | 140647829 | 140647924 |
| ENSE00002434175 | 140660758 | 140660815 |
| ENSE00002472438 | 140661620 | 140661708 |
| ENSE00002504506 | 140658737 | 140658776 |
| ENSE00002514209 | 140657554 | 140657662 |
| ENSE00002528703 | 140658939 | 140659164 |
| ENSE00002530330 | 140662179 | 140662213 |
| ENSE00003464147 | 140661899 | 140662007 |
| ENSE00003554155 | 140648471 | 140648537 |
| ENSE00003565785 | 140652088 | 140652147 |
| ENSE00003575219 | 140659315 | 140659333 |
| ENSE00003614023 | 140660115 | 140660195 |
| ENSE00003636273 | 140659756 | 140659834 |
| ENSE00003688994 | 140651714 | 140651806 |
| ENSE00003784412 | 140655829 | 140655992 |
| ENSE00003786618 | 140654681 | 140654727 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 99.34.
FANTOM5 (CAGE): breadth broad, TPM avg 0.5624 / max 32.3279, expressed in 317 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 58924 | 91.5731 | 1824 |
| 58925 | 0.5624 | 317 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| tendon of biceps brachii | UBERON:0008188 | 99.34 | gold quality |
| bronchial epithelial cell | CL:0002328 | 99.31 | gold quality |
| right uterine tube | UBERON:0001302 | 99.27 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 99.14 | gold quality |
| bronchus | UBERON:0002185 | 99.04 | gold quality |
| tendon | UBERON:0000043 | 98.89 | gold quality |
| sural nerve | UBERON:0015488 | 98.84 | gold quality |
| calcaneal tendon | UBERON:0003701 | 98.79 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 98.60 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 98.29 | gold quality |
| left testis | UBERON:0004533 | 98.28 | gold quality |
| right testis | UBERON:0004534 | 98.24 | gold quality |
| ganglionic eminence | UBERON:0004023 | 97.82 | gold quality |
| testis | UBERON:0000473 | 97.80 | gold quality |
| ventricular zone | UBERON:0003053 | 97.69 | gold quality |
| type B pancreatic cell | CL:0000169 | 97.66 | gold quality |
| cortical plate | UBERON:0005343 | 97.49 | gold quality |
| islet of Langerhans | UBERON:0000006 | 97.44 | gold quality |
| mucosa of stomach | UBERON:0001199 | 97.44 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 97.40 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 97.35 | gold quality |
| popliteal artery | UBERON:0002250 | 97.32 | gold quality |
| tibial artery | UBERON:0007610 | 97.32 | gold quality |
| monocyte | CL:0000576 | 97.24 | gold quality |
| right lung | UBERON:0002167 | 97.24 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 97.21 | gold quality |
| leukocyte | CL:0000738 | 97.17 | gold quality |
| mononuclear cell | CL:0000842 | 97.16 | gold quality |
| rectum | UBERON:0001052 | 97.14 | gold quality |
| gastrocnemius | UBERON:0001388 | 97.09 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-114 | yes | 60.83 |
| E-GEOD-130148 | yes | 15.65 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ZBTB16
miRNA regulators (miRDB)
16 targeting IK, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-3191-5P | 99.24 | 66.52 | 1722 |
| HSA-MIR-664A-3P | 99.22 | 71.08 | 2696 |
| HSA-MIR-6074 | 98.89 | 69.64 | 2187 |
| HSA-MIR-6764-3P | 98.44 | 67.64 | 1153 |
| HSA-MIR-6824-3P | 98.44 | 67.62 | 1154 |
| HSA-MIR-6782-3P | 97.60 | 67.75 | 931 |
| HSA-MIR-194-3P | 97.36 | 65.96 | 1027 |
| HSA-MIR-939-5P | 97.10 | 65.80 | 1579 |
| HSA-MIR-3674 | 97.01 | 68.86 | 1171 |
| HSA-MIR-1343-5P | 96.48 | 66.06 | 1506 |
| HSA-MIR-362-5P | 95.87 | 66.02 | 554 |
| HSA-MIR-500B-5P | 95.87 | 66.04 | 557 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 99.9% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 10)
- At least three genes, orthologous to loci in this LD block, HBEGF, IK, and SRA1, result independently in a phenotype of myocardial contractile dysfunction when their expression is reduced with morpholino antisense reagents. (PMID:19064678)
- IK gene expression is decreased in follicular variant of papillary thyroid carcinoma. (PMID:21509594)
- RED is required for kinetochore localization of MAD1, mitotic progression, and activation of the spindle assembly checkpoint. (PMID:22351768)
- Data suggest that two human spliceosomal factors, RED and SMU1, are recruited to control expression and alternative splicing of viral exportins via PB2 (polymerase PB2) of influenza A virus (H3N2) and are required for efficient viral multiplication. (PMID:24945353)
- IK is an essential protein for achieving correct mitotic progress through the regulation of mitotic kinases and phosphatases (PMID:24996188)
- Data suggest an indirect radiosensitivity of hIK channels to low-dose photon irradiation with an impact on cell differentiation. (PMID:25277267)
- IK inhibits Aurora B activation through recruiting PP2A into IK and Aurora B complex. (PMID:26906715)
- Investigated and identified antiviral agents targeting the assembly of the human RED-SMU1 splicing complex, and results demonstrate possibility of RED-SMU1 destabilizing molecules to be used in antiviral therapy. (PMID:31076555)
- Smu1 and RED function both as alternative splicing regulators and as general splicing factors and are required predominantly for efficient splicing of short introns. (PMID:31409787)
- IK: A novel cell mitosis regulator that contributes to carcinogenesis. (PMID:34250629)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ik | ENSDARG00000004161 |
| drosophila_melanogaster | CG14722 | FBGN0037943 |
| caenorhabditis_elegans | WBGENE00012858 |
Paralogs (2): CSTF1 (ENSG00000101138), WDR55 (ENSG00000120314)
Protein
Protein identifiers
Protein Red — Q13123 (reviewed: Q13123)
Alternative names: Cytokine IK, IK factor, Protein RER
All UniProt accessions (6): D6RAH1, D6RAY9, D6RCQ4, D6REL4, E7EQZ7, Q13123
UniProt curated annotations — full annotation on UniProt →
Function. Involved in pre-mRNA splicing as a component of the spliceosome. Auxiliary spliceosomal protein that regulates selection of alternative splice sites in a small set of target pre-mRNA species. Required for normal mitotic cell cycle progression. Recruits MAD1L1 and MAD2L1 to kinetochores, and is required to trigger the spindle assembly checkpoint. Required for normal accumulation of SMU1. (Microbial infection) Required, together with SMU1, for normal splicing of influenza A virus NS1 pre-mRNA, which is required for the production of the exportin NS2 and for the production of influenza A virus particles. Not required for the production of VSV virus particles.
Subunit / interactions. (Microbial infection) Identified in a complex with SMU1 and influenza A virus RNA polymerase subunits PB1 and PB2. Directly interacts with SMU1 and with influenza A virus RNA polymerase subunits PB1 and PB2. Component of the spliceosome B complex. Interacts with SMU1. Interacts with MAD1L1. May interact with DHX15.
Subcellular location. Nucleus. Nucleoplasm. Chromosome. Cytoplasm. Cytoskeleton. Spindle pole.
Tissue specificity. Ubiquitous.
Induction. Up-regulated during mitosis (at protein level).
Similarity. Belongs to the RED family.
RefSeq proteins (1): NP_006074* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR012492 | RED_C | Domain |
| IPR012916 | RED_N | Domain |
| IPR039896 | Red-like | Family |
Pfam: PF07807, PF07808
UniProt features (54 total): repeat 17, cross-link 14, modified residue 7, compositionally biased region 5, region of interest 4, strand 3, sequence conflict 2, chain 1, helix 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6Q8I | X-RAY DIFFRACTION | 3.17 |
| 8QZS | ELECTRON MICROSCOPY | 4.1 |
| 5O9Z | ELECTRON MICROSCOPY | 4.5 |
| 8QO9 | ELECTRON MICROSCOPY | 5.29 |
| 9R8V | ELECTRON MICROSCOPY | 8.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13123-F1 | 68.95 | 0.11 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (21): 98, 137, 287, 417, 460, 485, 536, 151, 310, 331, 386, 388, 404, 408, 496, 501, 509, 541, 543, 544 …
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-72163 | mRNA Splicing - Major Pathway |
MSigDB gene sets: 205 (showing top):
GOBP_CHROMOSOME_ORGANIZATION, GOBP_REGULATION_OF_NUCLEAR_DIVISION, GCM_NPM1, MORF_UBE2I, GOBP_CELL_CYCLE_PHASE_TRANSITION, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, MORF_RAD21, GOBP_CHROMOSOME_SEPARATION, MORF_PSMC2, SHIPP_DLBCL_CURED_VS_FATAL_DN, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GCM_PSME1, GCM_PPP1CC, MORF_RAF1, GOBP_ORGANELLE_FISSION
GO Biological Process (6): mitotic cell cycle (GO:0000278), mRNA splicing, via spliceosome (GO:0000398), mitotic spindle assembly checkpoint signaling (GO:0007094), protein localization to kinetochore (GO:0034501), mRNA processing (GO:0006397), RNA splicing (GO:0008380)
GO Molecular Function (2): identical protein binding (GO:0042802), protein binding (GO:0005515)
GO Cellular Component (11): spindle pole (GO:0000922), nucleus (GO:0005634), nucleoplasm (GO:0005654), chromosome (GO:0005694), nuclear speck (GO:0016607), U2-type precatalytic spliceosome (GO:0071005), nuclear chromosome (GO:0000228), spliceosomal complex (GO:0005681), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), mitotic spindle pole (GO:0097431)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| mRNA Splicing | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| RNA processing | 2 |
| nuclear lumen | 2 |
| intracellular membraneless organelle | 2 |
| cell cycle | 1 |
| mitotic nuclear division | 1 |
| RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | 1 |
| mRNA processing | 1 |
| mitotic cell cycle | 1 |
| negative regulation of mitotic metaphase/anaphase transition | 1 |
| spindle assembly checkpoint signaling | 1 |
| mitotic spindle checkpoint signaling | 1 |
| protein localization to chromosome, centromeric region | 1 |
| protein localization to condensed chromosome | 1 |
| mRNA metabolic process | 1 |
| protein binding | 1 |
| binding | 1 |
| spindle | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear ribonucleoprotein granule | 1 |
| U2-type spliceosomal complex | 1 |
| U1 snRNP | 1 |
| U2 snRNP | 1 |
| U4/U6 x U5 tri-snRNP complex | 1 |
| precatalytic spliceosome | 1 |
| nucleus | 1 |
| chromosome | 1 |
| nuclear protein-containing complex | 1 |
| ribonucleoprotein complex | 1 |
| intracellular anatomical structure | 1 |
| spindle pole | 1 |
| mitotic spindle | 1 |
Protein interactions and networks
STRING
1140 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| IK | COIL | P38432 | 648 |
| IK | SP100 | P23497 | 643 |
| IK | ATN1 | P54259 | 581 |
| IK | CASZ1 | Q86V15 | 482 |
| IK | SMU1 | Q2TAY7 | 460 |
| IK | CD34 | P28906 | 421 |
| IK | MMAA | Q8IVH4 | 405 |
| IK | HIVEP3 | Q5T1R4 | 360 |
| IK | RBPMS | Q93062 | 348 |
| IK | WDR12 | Q9GZL7 | 339 |
| IK | LSM4 | Q9Y4Z0 | 326 |
| IK | UMPS | P11172 | 315 |
| IK | RABAC1 | Q9UI14 | 311 |
| IK | CWC22 | Q9HCG8 | 305 |
| IK | C9 | P02748 | 301 |
IntAct
186 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SMU1 | IK | psi-mi:“MI:0915”(physical association) | 0.870 |
| IK | SMU1 | psi-mi:“MI:0915”(physical association) | 0.870 |
| PRPF6 | SART1 | psi-mi:“MI:0914”(association) | 0.750 |
| DDX6 | IK | psi-mi:“MI:0915”(physical association) | 0.660 |
| RAB8B | GDI1 | psi-mi:“MI:0914”(association) | 0.640 |
| DDX23 | PRPF4 | psi-mi:“MI:0914”(association) | 0.640 |
| IK | PRPF6 | psi-mi:“MI:0915”(physical association) | 0.630 |
| EFTUD2 | IK | psi-mi:“MI:0915”(physical association) | 0.620 |
| CEP70 | IK | psi-mi:“MI:0915”(physical association) | 0.560 |
| IK | CEP70 | psi-mi:“MI:0915”(physical association) | 0.560 |
| IK | EGLN3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MBD3 | IK | psi-mi:“MI:0915”(physical association) | 0.560 |
| QARS1 | IK | psi-mi:“MI:0915”(physical association) | 0.560 |
| IK | DR1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GTF2B | IK | psi-mi:“MI:0915”(physical association) | 0.560 |
| LMNA | IK | psi-mi:“MI:0915”(physical association) | 0.560 |
| IK | DNAJB6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| IK | OPTN | psi-mi:“MI:0915”(physical association) | 0.560 |
| IK | SPRED1 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (289): CEP70 (Two-hybrid), IK (Affinity Capture-MS), IK (Affinity Capture-MS), IK (Affinity Capture-MS), IK (Affinity Capture-MS), IK (Affinity Capture-MS), IK (Affinity Capture-MS), IK (Affinity Capture-MS), IK (Affinity Capture-MS), IK (Affinity Capture-MS), IK (Affinity Capture-MS), IK (Co-fractionation), IK (Co-fractionation), IK (Affinity Capture-MS), IK (Affinity Capture-MS)
ESM2 similar proteins: A0JPM9, A2AQ19, O43395, O75391, O75822, P04973, P09496, P29084, P29540, Q02614, Q0VCU8, Q13123, Q15650, Q2HJ41, Q2KIA6, Q2KJF9, Q3MHJ0, Q3UGC7, Q5BK07, Q5I0B5, Q5NVI3, Q5R5F1, Q5R8D1, Q5RAD5, Q5RE03, Q5ZJ85, Q5ZJ97, Q5ZK25, Q5ZKA4, Q66HG8, Q66JS6, Q6GMH0, Q6INR1, Q6P320, Q7SXU0, Q7SYJ9, Q7TNE3, Q8BM39, Q91WE2, Q922U1
Diamond homologs: O48713, Q13123, Q5NVI3, Q66HG8, Q9Z1M8, Q9N4U5
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 168 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| mRNA Splicing | 23 | 22.0× | 9e-23 |
| mRNA Splicing - Minor Pathway | 11 | 21.4× | 3e-10 |
| Processing of Capped Intron-Containing Pre-mRNA | 26 | 18.6× | 9e-24 |
| mRNA Splicing - Major Pathway | 37 | 17.6× | 7e-34 |
| Transport of Mature Transcript to Cytoplasm | 5 | 16.6× | 5e-04 |
| RNA Polymerase II Transcription Termination | 8 | 15.3× | 3e-06 |
| mRNA 3’-end processing | 8 | 13.7× | 6e-06 |
| Transport of Mature mRNA derived from an Intron-Containing Transcript | 9 | 11.9× | 4e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| spliceosomal snRNP assembly | 8 | 32.1× | 3e-08 |
| negative regulation of mRNA splicing, via spliceosome | 6 | 31.7× | 5e-06 |
| RNA splicing, via transesterification reactions | 6 | 25.8× | 1e-05 |
| U2-type prespliceosome assembly | 6 | 25.8× | 1e-05 |
| mRNA splicing, via spliceosome | 33 | 20.8× | 2e-31 |
| regulation of alternative mRNA splicing, via spliceosome | 10 | 16.8× | 9e-08 |
| mRNA transport | 7 | 12.7× | 1e-04 |
| mRNA export from nucleus | 6 | 12.2× | 7e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
84 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 38 |
| Likely benign | 10 |
| Benign | 7 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2248 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:140647922:ATA:A | donor_gain | 1.0000 |
| 5:140647923:TA:T | donor_gain | 1.0000 |
| 5:140647925:G:GG | donor_gain | 1.0000 |
| 5:140648467:TCAG:T | acceptor_loss | 1.0000 |
| 5:140648468:CAG:C | acceptor_loss | 1.0000 |
| 5:140648470:G:T | acceptor_loss | 1.0000 |
| 5:140648470:GGT:G | acceptor_gain | 1.0000 |
| 5:140648536:CA:C | donor_gain | 1.0000 |
| 5:140648538:G:GG | donor_gain | 1.0000 |
| 5:140651712:A:AG | acceptor_gain | 1.0000 |
| 5:140651712:A:G | acceptor_loss | 1.0000 |
| 5:140651713:G:GA | acceptor_gain | 1.0000 |
| 5:140651713:GA:G | acceptor_gain | 1.0000 |
| 5:140651713:GAT:G | acceptor_gain | 1.0000 |
| 5:140651713:GATC:G | acceptor_gain | 1.0000 |
| 5:140651713:GATCA:G | acceptor_gain | 1.0000 |
| 5:140651802:CATGA:C | donor_gain | 1.0000 |
| 5:140651803:ATGA:A | donor_gain | 1.0000 |
| 5:140651804:TGA:T | donor_gain | 1.0000 |
| 5:140651805:GA:G | donor_gain | 1.0000 |
| 5:140651805:GAG:G | donor_gain | 1.0000 |
| 5:140651806:AG:A | donor_loss | 1.0000 |
| 5:140651807:G:GG | donor_gain | 1.0000 |
| 5:140651808:T:G | donor_loss | 1.0000 |
| 5:140652144:AAAGG:A | donor_loss | 1.0000 |
| 5:140652146:AGGT:A | donor_loss | 1.0000 |
| 5:140652147:GG:G | donor_loss | 1.0000 |
| 5:140652148:GTGAA:G | donor_loss | 1.0000 |
| 5:140652149:T:G | donor_loss | 1.0000 |
| 5:140652154:G:GT | donor_gain | 1.0000 |
AlphaMissense
3721 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:140651729:T:A | N33K | 1.000 |
| 5:140651729:T:G | N33K | 1.000 |
| 5:140651733:G:C | D35H | 1.000 |
| 5:140651734:A:G | D35G | 1.000 |
| 5:140651734:A:T | D35V | 1.000 |
| 5:140651736:T:A | F36I | 1.000 |
| 5:140651736:T:C | F36L | 1.000 |
| 5:140651736:T:G | F36V | 1.000 |
| 5:140651737:T:C | F36S | 1.000 |
| 5:140651737:T:G | F36C | 1.000 |
| 5:140651738:C:A | F36L | 1.000 |
| 5:140651738:C:G | F36L | 1.000 |
| 5:140651739:A:G | R37G | 1.000 |
| 5:140651740:G:C | R37T | 1.000 |
| 5:140651740:G:T | R37M | 1.000 |
| 5:140651741:G:C | R37S | 1.000 |
| 5:140651741:G:T | R37S | 1.000 |
| 5:140651746:T:C | L39P | 1.000 |
| 5:140651749:T:A | L40H | 1.000 |
| 5:140651749:T:C | L40P | 1.000 |
| 5:140652132:G:C | R74T | 1.000 |
| 5:140652132:G:T | R74M | 1.000 |
| 5:140652133:G:C | R74S | 1.000 |
| 5:140652133:G:T | R74S | 1.000 |
| 5:140652135:G:C | R75T | 1.000 |
| 5:140652135:G:T | R75M | 1.000 |
| 5:140652136:G:C | R75S | 1.000 |
| 5:140652136:G:T | R75S | 1.000 |
| 5:140652139:A:C | K76N | 1.000 |
| 5:140652139:A:T | K76N | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000029494 (5:140661307 C>T), RS1000065251 (5:140648011 T>G), RS1000223874 (5:140658206 G>A,C), RS1000242120 (5:140662511 C>T), RS1000314787 (5:140662272 T>C), RS1000671031 (5:140649359 C>T), RS1000829137 (5:140656918 A>G), RS1000851349 (5:140651462 T>G), RS1000877115 (5:140655372 A>T), RS1000938011 (5:140649531 A>C), RS1000961668 (5:140656135 T>C), RS1000986821 (5:140647457 G>A,C,T), RS1001122884 (5:140648360 C>A,T), RS1001156936 (5:140657205 A>C,G), RS1001198011 (5:140648654 C>A)
Disease associations
OMIM: gene MIM:600549 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2321616 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,538 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1232461 | MOLIBRESIB | 2 | 1,538 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 3 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.13 | Kd | 746 | nM | MOLIBRESIB |
| 6.09 | IC50 | 820 | nM | MOLIBRESIB |
PubChem BioAssay actives
2 with measured affinity, of 10 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide | 2179247: Binding affinity against IK (unknown origin) assessed as apparent dissociation constant incubated for 1 hr by colloidal coomassie staining based LC-MS/MS analysis | kd | 0.7460 | uM |
CTD chemical–gene interactions
35 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases expression | 2 |
| FR900359 | affects phosphorylation | 1 |
| bisphenol F | affects cotreatment, increases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| uranyl acetate | affects expression | 1 |
| bisphenol A | affects cotreatment, increases expression | 1 |
| ochratoxin A | decreases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| poly(propyleneimine) | decreases expression | 1 |
| abrine | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Carbamazepine | affects expression | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Diethylstilbestrol | decreases expression | 1 |
| Doxorubicin | increases expression | 1 |
| Enzyme Inhibitors | decreases activity, increases O-linked glycosylation | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Ribonucleotides | affects binding | 1 |
| Selenium | increases expression | 1 |
| Smoke | increases expression, increases abundance | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
ChEMBL screening assays
9 unique, capped per target: 9 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2328092 | Binding | Inhibition of IK (unknown origin) | Ion channels as therapeutic targets: a drug discovery perspective. — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.