IL1B

gene
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Also known as IL1F2IL-1BIL1-BETA

Summary

IL1B (interleukin 1 beta, HGNC:5992) is a protein-coding gene on chromosome 2q14.1, encoding Interleukin-1 beta (P01584). Potent pro-inflammatory cytokine.

The protein encoded by this gene is a member of the interleukin 1 cytokine family. This cytokine is produced by activated macrophages as a proprotein, which is proteolytically processed to its active form by caspase 1 (CASP1/ICE). This cytokine is an important mediator of the inflammatory response, and is involved in a variety of cellular activities, including cell proliferation, differentiation, and apoptosis. The induction of cyclooxygenase-2 (PTGS2/COX2) by this cytokine in the central nervous system (CNS) is found to contribute to inflammatory pain hypersensitivity. Similarly, IL-1B has been implicated in human osteoarthritis pathogenesis. Patients with severe Coronavirus Disease 2019 (COVID-19) present elevated levels of pro-inflammatory cytokines such as IL-1B in bronchial alveolar lavage fluid samples. The lung damage induced by the Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is to a large extent, a result of the inflammatory response promoted by cytokines such as IL-1B. This gene and eight other interleukin 1 family genes form a cytokine gene cluster on chromosome 2.

Source: NCBI Gene 3553 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): hereditary diffuse gastric adenocarcinoma (No Known Disease Relationship, GenCC)
  • GWAS associations: 5
  • Clinical variants (ClinVar): 41 total
  • Phenotypes (HPO): 3
  • Druggable target: yes — 4 molecules with ChEMBL bioactivity
  • Transcription factor: yes — 21 downstream targets (CollecTRI)
  • MANE Select transcript: NM_000576

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:5992
Approved symbolIL1B
Nameinterleukin 1 beta
Location2q14.1
Locus typegene with protein product
StatusApproved
AliasesIL1F2, IL-1B, IL1-BETA
Ensembl geneENSG00000125538
Ensembl biotypeprotein_coding
OMIM147720
Entrez3553

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 4 protein_coding, 3 retained_intron, 1 protein_coding_CDS_not_defined

ENST00000263341, ENST00000416750, ENST00000418817, ENST00000432018, ENST00000477398, ENST00000487639, ENST00000491056, ENST00000496280

RefSeq mRNA: 1 — MANE Select: NM_000576 NM_000576

CCDS: CCDS2102

Canonical transcript exons

ENST00000263341 — 7 exons

ExonStartEnd
ENSE00000856835112829751112830573
ENSE00001000625112836708112836779
ENSE00003506405112833374112833575
ENSE00003508205112836183112836244
ENSE00003582426112832662112832826
ENSE00003615183112831292112831422
ENSE00003647827112835566112835617

Expression profiles

Bgee: expression breadth ubiquitous, 228 present calls, max score 99.48.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 671.8976 / max 92270.6341, expressed in 932 samples.

FANTOM5 promoters (15 alternative TSS)

Promoter IDTPM avgSamples expressed
30247661.2614929
302273.2827260
302352.4374226
302261.6328207
302321.3000190
302340.9422168
302300.4533126
302360.168549
302330.110838
302290.105043

Top tissues by expression

282 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
periodontal ligamentUBERON:000826699.48gold quality
granulocyteCL:000009493.93gold quality
monocyteCL:000057693.30gold quality
leukocyteCL:000073892.97gold quality
mononuclear cellCL:000084292.85gold quality
bloodUBERON:000017892.04gold quality
bone marrow cellCL:000209291.60gold quality
bone marrowUBERON:000237189.22gold quality
cartilage tissueUBERON:000241887.85gold quality
pancreatic ductal cellCL:000207986.65silver quality
gall bladderUBERON:000211086.14gold quality
vermiform appendixUBERON:000115486.05gold quality
deciduaUBERON:000245085.12gold quality
spleenUBERON:000210683.86gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099183.69gold quality
mucosa of urinary bladderUBERON:000125982.46gold quality
stromal cell of endometriumCL:000225581.80gold quality
type B pancreatic cellCL:000016981.51gold quality
olfactory bulbUBERON:000226481.50gold quality
parietal pleuraUBERON:000240081.02gold quality
buccal mucosa cellCL:000233681.01gold quality
caecumUBERON:000115380.81gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047380.51gold quality
smooth muscle tissueUBERON:000113579.99gold quality
palpebral conjunctivaUBERON:000181279.38gold quality
body of stomachUBERON:000116178.47gold quality
gingival epitheliumUBERON:000194978.35gold quality
epithelial cell of pancreasCL:000008378.29silver quality
rectumUBERON:000105277.94gold quality
superficial temporal arteryUBERON:000161477.92gold quality

Single-cell (SCXA)

Detected in 24 experiment(s), a significant marker in 24.

ExperimentMarker?Max mean expression
E-HCAD-36yes23985.52
E-GEOD-135922yes17552.84
E-MTAB-10855yes14701.50
E-MTAB-6678yes12010.48
E-MTAB-6075yes5036.25
E-GEOD-84465yes4715.47
E-MTAB-7407yes3556.63
E-GEOD-149689yes2589.66
E-CURD-55yes1113.51
E-MTAB-8559yes868.80
E-ENAD-21yes822.52
E-CURD-7yes700.98
E-CURD-112yes175.28
E-HCAD-1yes91.66
E-CURD-122yes52.56

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

21 targets.

TargetRegulation
ADAM15Activation
CLDN1Activation
CTSKActivation
DEPTORActivation
DIO1Repression
ENPP1Repression
GCH1Activation
GDF5Repression
HAS2Activation
IL6Activation
ITGA2Activation
ITGA3Repression
KRT1Repression
LGALS9Activation
MC1RActivation
MMP3Activation
SCNN1ARepression
SELEActivation
SERPINA3Activation
VCAM1Activation
YTHDC2Activation

Upstream regulators (CollecTRI, top): AHR, ANXA1, AP1, APP, ATF3, ATF4, ATF5, BCL6, CEBPB, CEBPD, CEBPG, CREB1, DDIT3, E2F1, EGR1, EHF, ELF3, ESR1, FOS, FOXC1, FOXO1, GLI2, HBP1, HES1, HIF1A, HMGA1, HMGB1, HNF1B, HNF4A, HR, HSF1, HTATIP2, IL6, IRF1, IRF2, IRF4, IRF5, IRF6, IRF8, JUN

miRNA regulators (miRDB)

27 targeting IL1B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-5692A100.0074.406850
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-495-3P99.9672.814197
HSA-MIR-568899.9673.234504
HSA-MIR-205-3P99.9269.923165
HSA-MIR-7-1-3P99.9171.534384
HSA-MIR-7-2-3P99.9171.404394
HSA-MIR-30A-3P99.8769.742928
HSA-MIR-30D-3P99.8769.922917
HSA-MIR-30E-3P99.8769.682942
HSA-MIR-472999.6972.184233
HSA-MIR-4743-3P99.6268.122095
HSA-MIR-427699.5667.662514
HSA-MIR-314799.5266.34388
HSA-MIR-888-5P99.3070.151855
HSA-MIR-330-5P98.7367.631788
HSA-MIR-1178-3P98.5767.09890
HSA-MIR-32698.2566.441565
HSA-MIR-430398.0168.132304
HSA-MIR-27B-5P97.3466.55549
HSA-MIR-431397.1863.15420
HSA-MIR-549A-5P96.3568.08587
HSA-MIR-129196.2865.891224
HSA-MIR-6775-3P95.7665.91982
HSA-MIR-797695.7565.671186
HSA-MIR-328-3P92.8264.37521
HSA-MIR-609091.0162.65222

Literature-anchored findings (GeneRIF, showing 40)

  • The level of IL-1 beta is significantly higher in sera of cicatricial pemphigoid patients with active disease before intravenous immunoglobulin therapy compared to the post-treatment level. (PMID:11448121)
  • There were no significant differences in the distributions of the IL-1RN and IL-1B genotypes, allel frequencies or halotypes. (PMID:11686217)
  • These studies demonstrate that PEIPC and PECPC isomers are potent activators of endothelial cells increasing synthesis of IL-8 and MCP-1. (PMID:11751881)
  • data fall short of showing significant association between a variant of the promoter of interleukin-1beta, polymorphism of angiotensinogen, and the missense variant of endothelial nitric oxide synthase and occurrence of idiopathic recurrent miscarriage (PMID:11756575)
  • Repressed transcription of IL-1beta and rapid decay of IL-1beta mRNA in septic shock neutrophils correlated with reductions in levels of IL-1beta after stimulation with LPS (PMID:11770040)
  • Interleukin-1 alpha and beta system in testis–quantitative analysis. Expression of immunomodulatory genes in male gonad. (PMID:11774564)
  • IL-1 beta increases CD40 ligand-induced cytokine secretion by monocyte-derived dendritic cells (DC), CD34+-derived DC, and peripheral blood DC independently of T cell-derived cytokines. (PMID:11777965)
  • Heat shock factor 1 represses transcription of the IL-1beta gene through physical interaction with the nuclear factor of interleukin 6 (PMID:11801594)
  • role in upregulating VEGF in vascular smooth muscle cells via the P38 mitogen-activated protein kinase pathway (PMID:11806247)
  • Genotype A2A2 of IL-1beta is associated with severe forms of rheumatoid arthritis. The allelic combination A1 IL-1beta/A2 IL-1Ra is less often present in rheumatoid arthritis patients with severe disease. (PMID:11838837)
  • Test found no evidence of an association of mutations with hypertension. (PMID:11840488)
  • Up-regulation of prostaglandin E2 synthesis by interleukin-1beta in human orbital fibroblasts (PMID:11847219)
  • Carriage of IL1beta2 and IL1RN*2 together with non-carriage of TNF2 is associated with increased susceptibility, but not with a prognosis of IgAN. (PMID:11849463)
  • differentiated articular chondrocytes are highly responsive to IL-1beta and that p38 MAPK mediates this response by inducing COX-2 gene expression. (PMID:11853544)
  • T helper 1-type immunity to trophoblast antigens in women with a history of recurrent pregnancy loss is associated with polymorphism of the IL1B promoter region (PMID:11857060)
  • In dengue shock syndrome pts, IL-1beta was significantly associated with t-PA (p < 0.03). IL1B is involved in the onset and regulation of hemostasis. (PMID:11858187)
  • in semsen of normal/infertile men (PMID:11868623)
  • Lidocaine inhibits secretion of IL-8 and IL-1beta and stimulates secretion of IL-1 receptor antagonist by epithelial cells. (PMID:11876744)
  • Up-regulation of IL1-beta is crucial for the pathogenesis of myeloma (PMID:11896542)
  • Il-1beta genotype carries asthma susceptibility only in men (PMID:11898000)
  • role in Candida albicans-induced interferon-gamma production in human whole blood cultures (PMID:11920321)
  • process of cervical dilatation during parturition at term is associated with an increased expression of interleukin-1 beta, interleukin-6 and interleukin-8 mRNA in the lower uterine segment (PMID:11950481)
  • Increased frequency of interleukin-1beta (-511) allele 2 in febrile seizures. polymorphism of interleukin-1beta at position -511 (PMID:11955925)
  • Interleukin-1beta processing following Shigella flexneri infection of human monocyte-derived dendritic cells. (PMID:11981835)
  • results suggest that NFkappaB is involved in the IL-1beta-induced COX-2 expression in the mesenchymal cells of human amnion (PMID:12021045)
  • secretion from acute myelogenous leukemia blasts was up-regulated by leptin (PMID:12031914)
  • TNF-alpha, IL1-beta, and immunoglobulin (GM and KM) gene polymorphisms in sarcoidosis. (PMID:12039524)
  • Interleukin 1 beta induces overexpression of mucin genes in cultured tumor cells which is inhibitable by a retinoic acid receptor alpha antagonist. (PMID:12042033)
  • role in inducing cyclooxygenase-2 and presenilin-1 gene expression potentiated by hypoxia in primary human neural cells (PMID:12050157)
  • expressed in human gastric carcinoma with Epstein-Barr virus infection (PMID:12050395)
  • Association of an interleukin 1B gene polymorphism with Parkinson’s disease (PMID:12070246)
  • Tumors derived from a retroviral vector coding human IL-1BETA gene transduced into Lewis lung carcinoma cells secrete IL-1 beta into the tumor milieu, which promotes tumor growth through hyperneovascularization. (PMID:12077278)
  • role in NF-kappa B induction modulated by a novel PAAD-containing protein (PMID:12093792)
  • plays a role the pathogenesis of the otitis media with effusion (REVIEW) (PMID:12101072)
  • Interleukin 1beta polymorphisms increase risk of hypochlorhydria and atrophic gastritis and reduce risk of duodenal ulcer recurrence in Japan. (PMID:12105837)
  • There are associations of spontaneous preterm delivery with the fetal carriage of IL1B+3953*1 and IL1RN*2 alleles in African and Hispanic populations, respectively. (PMID:12114904)
  • Association of interleukin-4 and interleukin-1B gene variants with Larsen score progression in rheumatoid arthritis. (PMID:12115161)
  • Association of the interleukin-1 gene cluster on chromosome 2q13 with knee osteoarthritis. (PMID:12115182)
  • role of p38 map kinase, NF-kappaB, and protein kinase c in IL-1beta mRNA expression by human peripheral blood leukocytes, monocytes, and neutrophils in response to Anaplasma phagocytophila (PMID:12117921)
  • Acanthamoeba castellanii by release of ADP and other metabolites lead to human monocytic cell death through apoptosis and stimulate the secretion of IL-1beta (PMID:12117953)

Cross-species orthologs

4 orthologs

OrganismSymbolGene ID
danio_rerioil1fmaENSDARG00000089383
danio_rerioil1bENSDARG00000098700
mus_musculusIl1bENSMUSG00000027398
rattus_norvegicusIl1bENSRNOG00000004649

Paralogs (7): IL37 (ENSG00000125571), IL36G (ENSG00000136688), IL1RN (ENSG00000136689), IL36A (ENSG00000136694), IL36RN (ENSG00000136695), IL36B (ENSG00000136696), IL1F10 (ENSG00000136697)

Protein

Protein identifiers

Interleukin-1 betaP01584 (reviewed: P01584)

Alternative names: Catabolin

All UniProt accessions (4): C9JSC2, C9JVK0, P01584, C9JWV2

UniProt curated annotations — full annotation on UniProt →

Function. Potent pro-inflammatory cytokine. Initially discovered as the major endogenous pyrogen, induces prostaglandin synthesis, neutrophil influx and activation, T-cell activation and cytokine production, B-cell activation and antibody production, and fibroblast proliferation and collagen production. Promotes Th17 differentiation of T-cells. Synergizes with IL12/interleukin-12 to induce IFNG synthesis from T-helper 1 (Th1) cells. Plays a role in angiogenesis by inducing VEGF production synergistically with TNF and IL6. Involved in transduction of inflammation downstream of pyroptosis: its mature form is specifically released in the extracellular milieu by passing through the gasdermin-D (GSDMD) pore. Acts as a sensor of S.pyogenes infection in skin: cleaved and activated by pyogenes SpeB protease, leading to an inflammatory response that prevents bacterial growth during invasive skin infection.

Subunit / interactions. Monomer. In its precursor form, weakly interacts with full-length MEFV; the mature cytokine does not interact at all. Interacts with integrins ITGAV:ITGBV and ITGA5:ITGB1; integrin-binding is required for IL1B signaling. Interacts with cargo receptor TMED10; the interaction is direct and is required for the secretion of IL1B mature form. Interacts with HSP90AB1; the interaction facilitates cargo translocation into the ERGIC. Interacts with HSP90B1; the interaction facilitates cargo translocation into the ERGIC.

Subcellular location. Cytoplasm. Cytosol. Secreted. Lysosome. Extracellular exosome.

Tissue specificity. Expressed in activated monocytes/macrophages (at protein level).

Post-translational modifications. Activation of the IL1B precursor involves a CASP1-catalyzed proteolytic cleavage. Processing and secretion are temporarily associated. (Microbial infection) Cleavage by S.pyogenes cysteine protease SpeB promotes its activation independently of CASP1.

Activity regulation. (Microbial infection) Cleavage by S.pyogenes cysteine protease SpeB promotes its activation independently of CASP1. SpeB-mediated maturation of IL1B plays a dual role depending on infection site: while IL1B inflammatory response prevents bacterial growth during invasive skin infections, it promotes streptococcal infection of the nasopharynx by disrupting colonization resistance mediated by the microbiota.

Induction. By LPS. Transcription and translation induced by M.tuberculosis and a number of different M.tuberculosis components in macrophages; EsxA is the most potent activator tested (at protein level). In pancreatic islets, release is increased by high glucose treatment. In pancreatic islets and macrophages, release is also increased by endocannabinoid anandamide/AEA.

Miscellaneous. The IL1B production occurs in 2 steps, each being controlled by different stimuli. First, inflammatory signals, such as LPS, stimulate the synthesis and promote the accumulation of cytosolic stores of pro-IL1B (priming). Then additional signals are required for inflammasome assembly, leading to CASP1 activation, pro-IL1B processing and eventually secretion of the active cytokine. IL1B processing and secretion are temporarily associated.

Similarity. Belongs to the IL-1 family.

RefSeq proteins (1): NP_000567* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000975IL-1_famFamily
IPR003502IL-1_propepDomain
IPR008996IL1/FGFHomologous_superfamily
IPR020877IL-1_CSConserved_site

Pfam: PF00340, PF02394

UniProt features (44 total): strand 14, mutagenesis site 12, site 8, sequence conflict 3, helix 2, propeptide 1, chain 1, sequence variant 1, short sequence motif 1, turn 1

Structure

Experimental structures (PDB)

64 structures, top 30 by resolution.

PDBMethodResolution (Å)
8RYSX-RAY DIFFRACTION1.16
5R8QX-RAY DIFFRACTION1.23
5R7WX-RAY DIFFRACTION1.27
5R8EX-RAY DIFFRACTION1.35
5R8MX-RAY DIFFRACTION1.39
5R8FX-RAY DIFFRACTION1.41
5R8OX-RAY DIFFRACTION1.42
5R8GX-RAY DIFFRACTION1.43
5R85X-RAY DIFFRACTION1.44
6Y8IX-RAY DIFFRACTION1.46
5R87X-RAY DIFFRACTION1.47
5R8AX-RAY DIFFRACTION1.47
5R8DX-RAY DIFFRACTION1.47
5R8IX-RAY DIFFRACTION1.47
5R8KX-RAY DIFFRACTION1.47
5R88X-RAY DIFFRACTION1.48
5R8NX-RAY DIFFRACTION1.48
4GAIX-RAY DIFFRACTION1.49
5R8BX-RAY DIFFRACTION1.49
5R86X-RAY DIFFRACTION1.5
5R8HX-RAY DIFFRACTION1.5
2NVHX-RAY DIFFRACTION1.53
5R8PX-RAY DIFFRACTION1.53
1L2HX-RAY DIFFRACTION1.54
5R8CX-RAY DIFFRACTION1.54
5R8LX-RAY DIFFRACTION1.56
5R8JX-RAY DIFFRACTION1.62
5R89X-RAY DIFFRACTION1.65
3POKX-RAY DIFFRACTION1.7
8RYKX-RAY DIFFRACTION1.8

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P01584-F176.240.49

Antibody-complex structures (SAbDab): 82KH2, 4G6J, 4G6M, 5BVP, 5MVZ, 7CHY, 7CHZ, 7Z4T

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (8): 204 (important for interaction with integrin); 105–106 ((microbial infection) cleavage; s.pyogenes speb); 115–116 ((microbial infection) cleavage; s.pyogenes speb); 120 (involved in receptor binding); 171 (important for interaction with integrin); 179 (important for interaction with integrin); 181 (important for interaction with integrin); 190 (important for interaction with integrin)

Mutagenesis-validated functional residues (12):

PositionPhenotype
6–27promotes release of il1b precursors through the gasdermin-d (gsdmd) ring-shaped pore complex.
27loss of activation by casp1; when associated with a-116.
87–111promotes release of il1b precursors through the gasdermin-d (gsdmd) ring-shaped pore complex.
116loss of activation by casp1; when associated with a-27.
171suppression of integrin binding; when associated with k-244. markedly reduced activity; when associated with e-190; e-20
179suppression of integrin binding; when associated with e-181 and k-244. markedly reduced activity; when associated with e
181suppression of integrin binding; when associated with e-179 and k-244. markedly reduced activity; when associated with e
190suppression of integrin binding; when associated with k-244. markedly reduced activity; when associated with e-171; e-20
204suppression of integrin binding; when associated with k-244. markedly reduced activity; when associated with e-171; e-19
221enhanced integrin binding.
233no effect on binding to il1r or on il1b activity. markedly reduced activity; when associated with e-171; e-190 and e-204
244increased affinity for integrin itgav:itgb3. suppression of integrin binding; when associated with e-171; e-190 or e-204

Function

Pathways and Gene Ontology

Reactome pathways

9 pathways

IDPathway
R-HSA-448706Interleukin-1 processing
R-HSA-5620971Pyroptosis
R-HSA-5660668CLEC7A/inflammasome pathway
R-HSA-6783783Interleukin-10 signaling
R-HSA-6785807Interleukin-4 and Interleukin-13 signaling
R-HSA-9020702Interleukin-1 signaling
R-HSA-9660826Purinergic signaling in leishmaniasis infection
R-HSA-9960519CASP4-mediated substrate cleavage
R-HSA-9960525CASP5-mediated substrate cleavage

MSigDB gene sets: 996 (showing top): GOBP_MYELOID_CELL_DIFFERENTIATION, GSE45365_NK_CELL_VS_CD11B_DC_DN, GOBP_PLATELET_DERIVED_GROWTH_FACTOR_RECEPTOR_SIGNALING_PATHWAY, GOBP_ENDOTHELIAL_CELL_DEVELOPMENT, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_POSITIVE_REGULATION_OF_MITOTIC_NUCLEAR_DIVISION, MODULE_92, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_NEGATIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, GOBP_CARBOHYDRATE_TRANSPORT, GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_NEGATIVE_REGULATION_OF_CELL_DEVELOPMENT, REACTOME_INNATE_IMMUNE_SYSTEM

GO Biological Process (94): fever generation (GO:0001660), positive regulation of T cell mediated immunity (GO:0002711), apoptotic process (GO:0006915), inflammatory response (GO:0006954), immune response (GO:0006955), signal transduction (GO:0007165), JNK cascade (GO:0007254), cell-cell signaling (GO:0007267), embryo implantation (GO:0007566), positive regulation of cell population proliferation (GO:0008284), negative regulation of cell population proliferation (GO:0008285), response to carbohydrate (GO:0009743), vascular endothelial growth factor production (GO:0010573), positive regulation of vascular endothelial growth factor production (GO:0010575), positive regulation of gene expression (GO:0010628), positive regulation of platelet-derived growth factor receptor signaling pathway (GO:0010641), positive regulation of epithelial to mesenchymal transition (GO:0010718), positive regulation of macrophage derived foam cell differentiation (GO:0010744), negative regulation of D-glucose transmembrane transport (GO:0010829), smooth muscle adaptation (GO:0014805), cytokine-mediated signaling pathway (GO:0019221), hyaluronan biosynthetic process (GO:0030213), positive regulation of cell migration (GO:0030335), neutrophil chemotaxis (GO:0030593), positive regulation of vascular endothelial growth factor receptor signaling pathway (GO:0030949), positive regulation of prostaglandin biosynthetic process (GO:0031394), positive regulation of fever generation (GO:0031622), positive regulation of prostaglandin secretion (GO:0032308), response to lipopolysaccharide (GO:0032496), positive regulation of granulocyte macrophage colony-stimulating factor production (GO:0032725), positive regulation of type II interferon production (GO:0032729), positive regulation of interleukin-2 production (GO:0032743), positive regulation of interleukin-6 production (GO:0032755), positive regulation of interleukin-8 production (GO:0032757), positive regulation of immature T cell proliferation in thymus (GO:0033092), response to ATP (GO:0033198), positive regulation of heterotypic cell-cell adhesion (GO:0034116), ectopic germ cell programmed cell death (GO:0035234), positive regulation of T cell proliferation (GO:0042102), regulation of canonical NF-kappaB signal transduction (GO:0043122)

GO Molecular Function (6): cytokine activity (GO:0005125), interleukin-1 receptor binding (GO:0005149), integrin binding (GO:0005178), protein domain specific binding (GO:0019904), protein binding (GO:0005515), receptor ligand activity (GO:0048018)

GO Cellular Component (7): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), lysosome (GO:0005764), cytosol (GO:0005829), secretory granule (GO:0030141), cytoplasm (GO:0005737), vesicle (GO:0031982)

Reactome top-level categories

Rollup of top-6 pathways:

CategoryPathways
Interleukin-1 family signaling2
Signaling by Interleukins2
Non-canonical inflammasome activation2
Regulated Necrosis1
CLEC7A (Dectin-1) signaling1
Cell recruitment (pro-inflammatory response)1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure3
cell communication2
signaling2
cell population proliferation2
regulation of cell population proliferation2
positive regulation of cell differentiation2
signaling receptor binding2
acute-phase response1
heat generation1
T cell mediated immunity1
positive regulation of lymphocyte mediated immunity1
regulation of T cell mediated immunity1
positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains1
programmed cell death1
apoptotic signaling pathway1
execution phase of apoptosis1
defense response1
immune system process1
response to stimulus1
cellular process1
regulation of cellular process1
cellular response to stimulus1
MAPK cascade1
multicellular organism development1
female pregnancy1
reproductive process1
positive regulation of cellular process1
negative regulation of cellular process1
response to oxygen-containing compound1
cytokine production1
positive regulation of cytokine production1
vascular endothelial growth factor production1
regulation of vascular endothelial growth factor production1
gene expression1
regulation of gene expression1
positive regulation of macromolecule biosynthetic process1
positive regulation of signal transduction1
regulation of platelet-derived growth factor receptor signaling pathway1
platelet-derived growth factor receptor signaling pathway1
epithelial to mesenchymal transition1

Protein interactions and networks

STRING

8488 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
IL1BIL2P01585999
IL1BIL1R1P14778999
IL1BIFNGP01579998
IL1BIL4P05112998
IL1BIL5P05113998
IL1BMYD88P78397998
IL1BTNFRSF1AP19438997
IL1BIL1RAPQ9NPH3997
IL1BCSF2P04141996
IL1BIL1R2P27930996
IL1BCSF3P09919993
IL1BTNFP01375993
IL1BIL6P05231990
IL1BCASP1P29466988
IL1BTLR4O00206984

IntAct

16 interactions, top by confidence:

ABTypeScore
IL1RAPIL1Bpsi-mi:“MI:0914”(association)0.760
IL1RAPIL1Bpsi-mi:“MI:0915”(physical association)0.760
IL1BIL1R1psi-mi:“MI:0407”(direct interaction)0.440
CASP1IL1Bpsi-mi:“MI:0570”(protein cleavage)0.440
IL1BPKMpsi-mi:“MI:0217”(phosphorylation reaction)0.440
IKBKGIL1Bpsi-mi:“MI:0915”(physical association)0.400
STING1ZSWIM8psi-mi:“MI:0914”(association)0.350
MYCpsi-mi:“MI:0914”(association)0.350
ATG16L1psi-mi:“MI:0914”(association)0.350
A2MIL1Bpsi-mi:“MI:2364”(proximity)0.270

BioGRID (60): A2M (Co-localization), IL1B (Affinity Capture-RNA), IL1B (Biochemical Activity), IL1B (Co-localization), IL1B (Biochemical Activity), IL1B (Affinity Capture-RNA), IL1B (Affinity Capture-RNA), IL1B (Affinity Capture-RNA), IL1B (Affinity Capture-RNA), IL1B (Affinity Capture-RNA), IL1B (Affinity Capture-RNA), IL1B (Affinity Capture-RNA), GSDMD (Affinity Capture-Western), CASP8 (Affinity Capture-Western), NEDD4 (Affinity Capture-Western)

ESM2 similar proteins: A4UYK8, O46612, O46613, P01582, P01583, P01584, P04822, P08831, P09428, P10749, P14628, P16598, P18430, P21621, P26889, P41687, P46648, P48089, P48090, P51493, P51745, P79161, P79162, P79182, P79340, Q14D04, Q28292, Q28385, Q28386, Q28579, Q2HZH0, Q2MH07, Q32NG6, Q3HWU1, Q3UIR3, Q63264, Q6PUD2, Q6R2X3, Q6ZUJ8, Q865X7

Diamond homologs: A4UYK8, P01584, P09428, P10749, P14628, P21621, P26889, P41687, P46648, P48090, P51493, P51745, P79162, P79182, Q28292, Q28386, Q2HZH0, Q2MH07, Q63264, Q6PUD2, Q6R2X3, Q865X8, Q8WNR2, Q9D6Z6, Q9WVG1, Q9XS77, Q9YGD3, Q9QYY1, Q9UBH0, O18999, P18510, P25085, P25086, P26890, Q29056, Q866R8, Q9BEH0, Q9NZH8, Q8WWZ1, Q9GMZ4

SIGNOR signaling

39 interactions.

AEffectBMechanism
IL1B“up-regulates activity”IL1R1binding
IL1B“down-regulates activity”LPL
IL1B“down-regulates quantity by repression”GDF5“transcriptional regulation”
IL1B“down-regulates quantity by repression”KRT1“transcriptional regulation”
IL1B“down-regulates quantity by repression”SCNN1A“transcriptional regulation”
IL1B“down-regulates quantity by repression”ENPP1“transcriptional regulation”
IL1B“up-regulates quantity by expression”GCH1“transcriptional regulation”
“UVB radiation”up-regulatesIL1B
IL1B“up-regulates quantity by expression”MC1R“transcriptional regulation”
“A9/b1 integrin”“up-regulates quantity by expression”IL1B
IL1B“down-regulates quantity by repression”ITGA3“transcriptional regulation”
IL1B“up-regulates quantity by expression”ITGA2“transcriptional regulation”
IRF5up-regulatesIL1B“transcriptional regulation”
IL1B“up-regulates quantity by expression”SERPINA3“transcriptional regulation”
NfKb-p65/p50“up-regulates quantity by expression”IL1B“transcriptional regulation”
NfKb-p65/p50“up-regulates quantity”IL1B“transcriptional regulation”
RELA“up-regulates quantity by expression”IL1B“transcriptional regulation”
IL1B“up-regulates quantity by expression”IL6“transcriptional regulation”
IL1Bup-regulatesImmune_response
IL1B“up-regulates activity”STAT3
M1_polarizationup-regulatesIL1B
IL1Bdown-regulatesIL1R2binding
IL1Bup-regulatesIL1R1binding
IL1Bup-regulatesIL1RAPbinding
HIF1A“up-regulates quantity by expression”IL1B“transcriptional regulation”
RELA“down-regulates activity”IL1B“transcriptional regulation”
MFGE8“down-regulates quantity by repression”IL1B“transcriptional regulation”

Disease & clinical

Clinical variants and AI predictions

ClinVar

41 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance14
Likely benign4
Benign2

Top pathogenic / likely-pathogenic (0)

SpliceAI

573 predictions. Top by Δscore:

VariantEffectΔscore
2:112830570:CACT:Cacceptor_gain1.0000
2:112830572:CT:Cacceptor_gain1.0000
2:112830580:C:CTacceptor_gain1.0000
2:112831288:TTAC:Tdonor_loss1.0000
2:112831289:TACCT:Tdonor_loss1.0000
2:112831290:A:ACdonor_gain1.0000
2:112831290:AC:Adonor_gain1.0000
2:112831290:ACCT:Adonor_gain1.0000
2:112831290:ACCTC:Adonor_gain1.0000
2:112831291:C:CAdonor_gain1.0000
2:112831291:CC:Cdonor_gain1.0000
2:112831291:CCT:Cdonor_gain1.0000
2:112831291:CCTC:Cdonor_gain1.0000
2:112831291:CCTCC:Cdonor_gain1.0000
2:112831397:T:Cacceptor_gain1.0000
2:112831418:CACCA:Cacceptor_gain1.0000
2:112831419:ACCA:Aacceptor_gain1.0000
2:112831420:CCA:Cacceptor_gain1.0000
2:112831420:CCAC:Cacceptor_gain1.0000
2:112831421:CA:Cacceptor_gain1.0000
2:112831421:CAC:Cacceptor_gain1.0000
2:112831422:AC:Aacceptor_loss1.0000
2:112831423:C:CCacceptor_gain1.0000
2:112831423:CTGAA:Cacceptor_loss1.0000
2:112832657:TTTAC:Tdonor_loss1.0000
2:112832658:TTA:Tdonor_loss1.0000
2:112832659:TA:Tdonor_loss1.0000
2:112832660:A:Cdonor_loss1.0000
2:112833415:T:Adonor_gain1.0000
2:112833449:T:TAdonor_gain1.0000

AlphaMissense

1816 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
2:112830488:A:GF228S0.999
2:112830520:G:CF217L0.999
2:112830520:G:TF217L0.999
2:112830521:A:GF217S0.999
2:112830522:A:GF217L0.999
2:112830526:A:CF215L0.999
2:112830526:A:TF215L0.999
2:112830528:A:GF215L0.999
2:112830386:A:GF262S0.998
2:112830527:A:GF215S0.998
2:112831362:A:GL176S0.998
2:112830428:A:TV248D0.997
2:112830458:A:TI238N0.997
2:112830521:A:CF217C0.997
2:112831416:A:GF158S0.997
2:112830385:G:CF262L0.996
2:112830385:G:TF262L0.996
2:112830386:A:CF262C0.996
2:112830387:A:GF262L0.996
2:112830454:G:CS239R0.996
2:112830454:G:TS239R0.996
2:112830456:T:GS239R0.996
2:112830458:A:CI238S0.996
2:112830458:A:GI238T0.996
2:112830484:C:AE229D0.996
2:112830484:C:GE229D0.996
2:112830488:A:CF228C0.996
2:112831339:A:CY184D0.996
2:112832703:A:GL142P0.996
2:112832745:T:GD128A0.996

dbSNP variants (sampled 300 via entrez): RS1000050546 (2:112830098 C>A,T), RS1000769125 (2:112831737 A>G), RS1000920623 (2:112838616 AC>A), RS1001096830 (2:112838305 A>C,G), RS1001547340 (2:112833094 T>A), RS1001657797 (2:112837058 A>T), RS1001997232 (2:112834776 G>T), RS1002063576 (2:112833326 T>C), RS1002282836 (2:112834355 T>C), RS1002440259 (2:112829987 AAAAC>A,AAAACAAAC), RS1002926902 (2:112835382 A>C), RS1003267588 (2:112833836 T>C), RS1003764587 (2:112829531 T>C), RS1004229091 (2:112837713 A>C,G), RS1004295535 (2:112837790 C>T)

Disease associations

OMIM: gene MIM:147720 | disease phenotypes: MIM:608316

GenCC curated gene-disease

DiseaseClassificationInheritance
hereditary diffuse gastric adenocarcinomaNo Known Disease RelationshipUnknown

Mondo (5): coronary heart disease, susceptibility to, 2 (MONDO:0012009), endometriosis (MONDO:0005133), cholangiocarcinoma (MONDO:0019087), antisynthetase syndrome (MONDO:0019344), hereditary diffuse gastric adenocarcinoma (MONDO:0007648)

Orphanet (2): Cholangiocarcinoma (Orphanet:70567), Antisynthetase syndrome (Orphanet:81)

HPO phenotypes

3 total (4 of 3 shown, HPO-id order):

HPOTerm
HP:0001442Typified by somatic mosaicism
HP:0012126Stomach cancer
HP:0410067Increased level of L-fucose in urine
HP:0030127Endometriosis

GWAS associations

5 associations (top):

StudyTraitp-value
GCST005038_21Allergic disease (asthma, hay fever or eczema)2.000000e-10
GCST006656_2Dysmenorrheic pain severity2.000000e-16
GCST008362_147Birth weight3.000000e-08
GCST008751_1Gestational age at birth (child effect)4.000000e-14
GCST008752_1Post-term birth4.000000e-08

EFO canonical traits (4, from GWAS)

EFO IDTrait name
EFO:0007889dysmenorrheic pain measurement
EFO:0004344birth weight
EFO:0005112gestational age
EFO:0006921birth measurement

MeSH disease descriptors (3)

DescriptorNameTree numbers
D018281CholangiocarcinomaC04.557.470.200.025.450
D004715EndometriosisC12.050.351.500.163; C12.100.250.163
C537778Antisynthetase syndrome (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL1909490 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

4 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 21,416 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL43452POMALIDOMIDE413,354
CHEMBL848LENALIDOMIDE45,256
CHEMBL3989927IBERDOMIDE31,300
CHEMBL3989934AVADOMIDE21,506

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

15 annotations.

VariantTypeLevelDrugsPhenotypes
rs1143623Toxicity3Platinum compoundsNon-Small Cell Lung Carcinoma
rs1143623Efficacy3Tumor necrosis factor alpha (TNF-alpha) inhibitors;ustekinumabPsoriasis
rs1143627Toxicity3aspirin
rs1143627Efficacy3Tumor necrosis factor alpha (TNF-alpha) inhibitors;ustekinumabPsoriasis
rs1143634Toxicity3antipsychoticsSchizophrenia
rs1143634Efficacy3infliximabCrohn Disease
rs1143634Dosage,Efficacy3morphinePain;Postoperative
rs12621220Toxicity3Platinum compoundsNon-Small Cell Lung Carcinoma
rs16944Efficacy3Bisphosphonates;clodronate;etidronic acid;risedronate;tiludronateOsteitis Deformans
rs16944Efficacy3lansoprazole;omeprazole;rabeprazoleHelicobacter Infections
rs16944Efficacy3pravastatin
rs16944Toxicity3antipsychoticsSchizophrenia
rs4848306Efficacy3Tumor necrosis factor alpha (TNF-alpha) inhibitorsInflammatory Bowel Diseases;Ulcerative Colitis
rs4849127Toxicity3antipsychoticsSchizophrenia

PharmGKB variants

6 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs16944IL1B33.004Bisphosphonates;clodronate;etidronic acid;risedronate;tiludronate;lansoprazole;omeprazole;rabeprazole;pravastatin;antipsychotics
rs1143623IL1B33.752Tumor necrosis factor alpha (TNF-alpha) inhibitors;ustekinumab;Platinum compounds
rs1143627IL1B33.752Tumor necrosis factor alpha (TNF-alpha) inhibitors;ustekinumab;aspirin
rs1143634IL1B33.004morphine;antipsychotics;infliximab
rs4848306IL1B33.001Tumor necrosis factor alpha (TNF-alpha) inhibitors
rs4849127IL1B33.001antipsychotics

Binding affinities (BindingDB)

146 measured of 169 human assays (170 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
4-chloro-N-[(3,3-difluoro-1-hydroxy-5-methylcyclohexyl)methyl]-1-(2,2,2-trifluoroethyl)indole-3-carboxamideIC501.4 nMUS-10322143: Inhibitors of ADAMTS4 or ADAMTS5 for use in preventing or treating cardiac remodeling and chronic heart failure
CC-220 (Compound 6)IC5028 nMUS-9694015: Methods for the treatment of locally advanced breast cancer
4-chloro-N-[[(1S,3S)-1-hydroxy-3-methylcyclohexyl]methyl]-1-(2,2,2-trifluoroethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
1-(2-aminoethyl)-4-chloro-N-[(4,4-difluorocyclohexyl)methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-1-(3,3-difluoropropyl)-N-[[(1S,3S)-1-hydroxy-3-methylcyclohexyl]methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-(3,3,3-trifluoropropyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[[(1R)-3,3-difluoro-1-hydroxycyclohexyl]methyl]-1-(2-methoxyethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(3,3-difluoro-1-hydroxycyclohexyl)methyl]-1-(2-methoxyethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluoro-1-hydroxycyclohexyl)methyl]-1-(2-methoxyethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
N-[[(1S,4R)-2-bicyclo[2.2.1]heptanyl]methyl]-4-chloro-1-(oxetan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
N-[1-(1-adamantyl)ethyl]-4-chloro-1-(oxetan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(1-hydroxy-3,3-dimethylcyclohexyl)methyl]-1-(oxetan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[[(1S)-3,3-difluorocyclohexyl]methyl]-1-(oxetan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-1-(oxetan-3-yl)-N-(spiro[2.5]octan-7-ylmethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
N-[2-[(1S,2S,4S)-2-bicyclo[2.2.1]hept-5-enyl]ethyl]-4-chloro-1-(oxetan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(1-hydroxy-3-methylcyclohexyl)methyl]-1-(oxetan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[[(1S)-3,3-difluoro-1-hydroxycyclohexyl]methyl]-1-(oxetan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(3,3-difluoro-1-hydroxycyclohexyl)methyl]-1-(oxetan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[[(1S,3S)-1-hydroxy-3-methylcyclohexyl]methyl]-1-(oxetan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[[(1R,3R)-1-hydroxy-3-methylcyclohexyl]methyl]-1-(oxetan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-(oxetan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[[(1R,3R)-1-hydroxy-3-methylcyclohexyl]methyl]-1-(oxolan-3-yl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-(oxetan-2-ylmethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
tert-butyl 3-[4-chloro-3-[(4,4-difluoro-1-hydroxycyclohexyl)methylcarbamoyl]indol-1-yl]azetidine-1-carboxylateIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(3,3-difluoro-1-hydroxycyclohexyl)methyl]-1-pyrrolidin-3-ylindole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
tert-butyl 3-[4-chloro-3-[(4,4-difluorocyclohexyl)methylcarbamoyl]indol-1-yl]pyrrolidine-1-carboxylateIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
tert-butyl (2S)-2-[[4-chloro-3-[(4,4-difluorocyclohexyl)methylcarbamoyl]indol-1-yl]methyl]azetidine-1-carboxylateIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
1-(azetidin-2-ylmethyl)-4-chloro-N-[(3,3-difluoro-1-hydroxycyclohexyl)methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
1-(azetidin-3-ylmethyl)-4-chloro-N-[(3,3-difluoro-1-hydroxycyclohexyl)methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-[[(5R)-2-oxo-1,3-oxazolidin-5-yl]methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[[(1S)-3,3-difluoro-1-hydroxycyclohexyl]methyl]-1-[[(2S)-oxolan-2-yl]methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluoro-1-hydroxycyclohexyl)methyl]-1-[[(2R)-oxolan-2-yl]methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-[[(2R)-oxolan-2-yl]methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(3,3-difluoro-1-hydroxycyclohexyl)methyl]-1-[[(2R)-oxolan-2-yl]methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-[[(2S)-oxolan-2-yl]methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(3,3-difluoro-1-hydroxycyclohexyl)methyl]-1-(oxolan-2-ylmethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[[(1S,3S)-1-hydroxy-3-methylcyclohexyl]methyl]-1-(oxolan-2-ylmethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[[3,3-difluoro-5-(trifluoromethyl)cyclohexyl]methyl]-1-(oxolan-2-ylmethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(3,3-difluoro-1-hydroxycyclohexyl)methyl]-1-(oxolan-3-ylmethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluoro-1-hydroxycyclohexyl)methyl]-1-(oxolan-3-ylmethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-(1,4-dioxan-2-ylmethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-[[(2S)-1-methylazetidin-2-yl]methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
tert-butyl (2S)-2-[[4-chloro-3-[(4,4-difluorocyclohexyl)methylcarbamoyl]indol-1-yl]methyl]pyrrolidine-1-carboxylateIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-[[(2R)-pyrrolidin-2-yl]methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-[[(2R)-5-oxopyrrolidin-2-yl]methyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-[2-[ethyl(methyl)amino]-2-oxoethyl]indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
tert-butyl 3-[[4-chloro-3-[(4,4-difluorocyclohexyl)methylcarbamoyl]indol-1-yl]methyl]morpholine-4-carboxylateIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluoro-1-hydroxycyclohexyl)methyl]-1-(oxan-2-ylmethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
4-chloro-N-[(4,4-difluorocyclohexyl)methyl]-1-(oxan-2-ylmethyl)indole-3-carboxamideIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases
tert-butyl (2S)-2-[[4-chloro-3-[(4,4-difluoro-1-hydroxycyclohexyl)methylcarbamoyl]indol-1-yl]methyl]pyrrolidine-1-carboxylateIC5055 nMUS-10323000: Indole derivatives and their use in neurodegenerative diseases

ChEMBL bioactivities

413 potent at pChembl≥5 of 422 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.40IC500.4nMCHEMBL5426651
9.40IC500.4nMCHEMBL5414596
9.34IC500.46nMIBERDOMIDE
9.22IC500.6nMCHEMBL5992744
9.15IC500.7nMCHEMBL5774519
9.10IC500.8nMCHEMBL5433380
9.10IC500.8nMCHEMBL5991941
9.10IC500.8nMCHEMBL5906571
9.10IC500.8nMCHEMBL5797061
9.10IC500.8nMCHEMBL5910216
9.07IC500.85nMCHEMBL5949264
9.05IC500.9nMCHEMBL5881090
9.00Ki1nMCHEMBL293979
9.00Ki1nMCHEMBL299288
8.92IC501.2nMCHEMBL6036597
8.89IC501.3nMCHEMBL5970809
8.89IC501.3nMCHEMBL5752218
8.80IC501.6nMCHEMBL5808276
8.80IC501.6nMCHEMBL5763108
8.74IC501.8nMCHEMBL5782617
8.72IC501.9nMCHEMBL5928082
8.72IC501.9nMCHEMBL5971979
8.64IC502.3nMCHEMBL6011033
8.59IC502.6nMCHEMBL6029082
8.59IC502.6nMCHEMBL5812129
8.52IC503nMCHEMBL5852308
8.52IC503nMCHEMBL5960754
8.49IC503.2nMCHEMBL5761984
8.49IC503.2nMCHEMBL5801636
8.48IC503.3nMCHEMBL6049792
8.46IC503.5nMCHEMBL6015148
8.44IC503.6nMCHEMBL5758980
8.33IC504.7nMCHEMBL6001622
8.23IC505.9nMCHEMBL5782662
8.22IC506nMCHEMBL5840970
8.21IC506.2nMCHEMBL5922366
8.20IC506.3nMCHEMBL5847930
8.18IC506.6nMCHEMBL5973713
8.17IC506.8nMCHEMBL5834410
8.13IC507.4nMCHEMBL5963394
8.12IC507.6nMCHEMBL5763742
8.08IC508.3nMCHEMBL5882443
7.99IC5010.2nMCHEMBL5790303
7.93IC5011.8nMCHEMBL5984350
7.89IC5013nMCHEMBL5874946
7.74IC5018.3nMCHEMBL5808248
7.64IC5022.7nMCHEMBL5836561
7.62IC5024.1nMCHEMBL6015125
7.60IC5025.3nMCHEMBL6035509
7.59IC5025.5nMCHEMBL6009102

PubChem BioAssay actives

19 with measured affinity, of 439 total; 15 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(3S)-3-[[(4S,7S)-7-[[4-(carboxymethoxy)benzoyl]amino]-6,10-dioxo-2,3,4,7,8,9-hexahydro-1H-pyridazino[1,2-a]diazepine-4-carbonyl]amino]-4-oxobutanoic acid2100630: Binding affinity to Interleukin-1beta (unknown origin) assessed as inhibition constantki0.0010uM
(3S)-3-[[(4S,7S)-7-[(2-fluorobenzoyl)amino]-6,10-dioxo-2,3,4,7,8,9-hexahydro-1H-pyridazino[1,2-a]diazepine-4-carbonyl]amino]-4-oxobutanoic acid2100630: Binding affinity to Interleukin-1beta (unknown origin) assessed as inhibition constantki0.0010uM
3-[[2-[2-[2-[2-[2-[(3-carboxy-5-quinolin-4-ylanilino)methyl]phenoxy]ethoxy]ethoxy]ethoxy]phenyl]methylamino]-5-quinolin-4-ylbenzoic acid2088628: Binding affinity to Interleukin-1beta (unknown origin) assessed as dissociation constantkd0.0400uM
(3S)-4-oxo-3-[2-[2-oxo-3-(3-phenylpropanoylamino)-1-pyridinyl]propanoylamino]butanoic acid2100630: Binding affinity to Interleukin-1beta (unknown origin) assessed as inhibition constantki0.1500uM
(3R)-3-[[2-[6-benzyl-2-oxo-3-(3-phenylpropanoylamino)-1-pyridinyl]acetyl]amino]-4-oxobutanoic acid2100630: Binding affinity to Interleukin-1beta (unknown origin) assessed as inhibition constantki0.1500uM
(3S)-4-oxo-3-[[2-[2-oxo-6-phenyl-3-(3-phenylpropanoylamino)-1-pyridinyl]acetyl]amino]butanoic acid2100630: Binding affinity to Interleukin-1beta (unknown origin) assessed as inhibition constantki0.9000uM
(3R)-3-[2-[6-benzyl-2-oxo-3-(3-phenylpropanoylamino)-1-pyridinyl]propanoylamino]-4-oxobutanoic acid2100630: Binding affinity to Interleukin-1beta (unknown origin) assessed as inhibition constantki0.9700uM
4-[4-hydroxy-3-[(3S)-6-methyl-2-oxo-3-(1H-pyrazol-4-yl)-1H-indol-3-yl]phenyl]benzene-1,3-dicarboxylic acid2071788: Binding affinity to C-terminally avi-tagged human IL-1 beta assessed as dissociation constant by surface plasmon resonance analysiskd1.1000uM
2-[(7S)-4-(benzenesulfonyl)-7-(2-morpholin-4-ylethylcarbamoyl)-1,4-diazepane-1-carbonyl]-8-[4-formyl-3-(trifluoromethyl)phenyl]imidazo[1,2-a]pyridine-6-carboxylic acid2071791: Antagonist activity at human recombinant His-tagged wild type IL-1 beta assessed as inhibition of IL-1 beta/Alexa 647 labeled human IL-1R1 (1 to 332) interaction preincubated with IL-1 beta for 1 hr followed by IL-1R1 addition and measured after 1 hr by TR-FRET assayic501.2000uM
(3S)-3-[[(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-3-(4-hydroxyphenyl)propanoyl]amino]-3-methylbutanoyl]amino]propanoyl]amino]-4-oxobutanoic acid627038: Induction of IL-1 beta production in LPS-induced human THP-1 cells by ELISAic502.0000uM
methyl (1R,2S,5S,7R,10S,11S,13R,15S)-7,15-dihydroxy-2,6,6,10,13,15-hexamethyl-17-methylidene-14,16-dioxotetracyclo[11.3.1.02,11.05,10]heptadecane-1-carboxylate627038: Induction of IL-1 beta production in LPS-induced human THP-1 cells by ELISAic502.7000uM
methyl (1R,2S,11S,12S,14R,16S)-16-hydroxy-2,6,6,11,14,16-hexamethyl-18-methylidene-8,15,17-trioxo-7-oxatetracyclo[12.3.1.02,12.05,11]octadec-4-ene-1-carboxylate627038: Induction of IL-1 beta production in LPS-induced human THP-1 cells by ELISAic503.7000uM
methyl (1R,2S,12S,14R,16S)-16-hydroxy-2,6,6,11,14,16-hexamethyl-18-methylidene-8,15,17-trioxo-7-oxatetracyclo[12.3.1.02,12.05,10]octadeca-4,10-diene-1-carboxylate627038: Induction of IL-1 beta production in LPS-induced human THP-1 cells by ELISAic504.4000uM
[(1S,3R,4S,5R,6S,7S,10R,14R,15S)-5-acetyloxy-14-(furan-3-yl)-3-hydroxy-10,15-dimethyl-9-oxo-7-propan-2-yl-2-oxapentacyclo[8.6.1.13,6.06,17.011,15]octadec-11-en-4-yl] (E)-2-methylbut-2-enoate1607901: Inhibition of IL1-beta (unknown origin)ic507.8000uM
2-[(7S)-4-(benzenesulfonyl)-7-(2-morpholin-4-ylethylcarbamoyl)-1,4-diazepane-1-carbonyl]-8-(4-formyl-3-propan-2-ylphenyl)imidazo[1,2-a]pyridine-6-carboxylic acid2071791: Antagonist activity at human recombinant His-tagged wild type IL-1 beta assessed as inhibition of IL-1 beta/Alexa 647 labeled human IL-1R1 (1 to 332) interaction preincubated with IL-1 beta for 1 hr followed by IL-1R1 addition and measured after 1 hr by TR-FRET assayic508.3000uM

CTD chemical–gene interactions

1155 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Lipopolysaccharidesdecreases reaction, increases expression, affects expression, increases reaction, increases abundance (+11 more)174
Particulate Matteraffects response to substance, increases cleavage, affects reaction, affects cotreatment, increases abundance (+5 more)64
Acetylcysteinedecreases expression, decreases reaction, increases reaction, increases abundance, affects binding (+5 more)43
Resveratrolincreases reaction, increases secretion, increases abundance, decreases activity, decreases reaction (+10 more)42
Dinoprostoneincreases chemical synthesis, increases secretion, affects expression, increases activity, decreases reaction (+4 more)40
Dexamethasoneaffects expression, affects reaction, decreases reaction, increases expression, increases reaction (+9 more)32
Tetrachlorodibenzodioxinincreases expression, affects reaction, increases reaction, affects binding, affects cotreatment (+5 more)27
Tetradecanoylphorbol Acetatedecreases reaction, increases secretion, affects cotreatment, increases expression, affects expression (+3 more)26
Quercetinincreases phosphorylation, decreases secretion, decreases response to substance, increases secretion, increases reaction (+8 more)25
Air Pollutantsaffects cotreatment, increases abundance, increases expression, increases response to substance, affects response to substance (+4 more)24
sodium arseniteincreases activity, increases degradation, increases secretion, decreases response to substance, affects reaction (+7 more)22
Adenosine Triphosphateincreases secretion, increases cleavage, increases expression, increases reaction, affects reaction (+2 more)21
SB 203580increases reaction, decreases reaction, decreases response to substance, increases cleavage, decreases expression (+7 more)20
2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-oneaffects reaction, affects cotreatment, decreases reaction, increases chemical synthesis, increases expression (+5 more)20
lipopolysaccharide, Escherichia coli O111 B4decreases reaction, increases expression, increases cleavage, increases abundance, increases acylation (+6 more)20
Glucoseincreases expression, increases secretion, affects cotreatment, affects reaction, decreases expression (+3 more)20
Nitric Oxidedecreases reaction, increases abundance, increases reaction, affects cotreatment, affects reaction (+3 more)19
Cadmium Chloridedecreases expression, increases reaction, affects reaction, decreases reaction, affects cotreatment (+5 more)19
Silicon Dioxideaffects cotreatment, affects reaction, increases cleavage, increases expression, decreases reaction (+3 more)18
pyrazolanthroneaffects cotreatment, decreases reaction, increases expression, increases activity, decreases expression (+4 more)17
Glucosaminedecreases expression, increases phosphorylation, increases expression, affects cotreatment, increases activity (+8 more)17
Tobacco Smoke Pollutiondecreases secretion, affects cotreatment, decreases reaction, increases expression, increases reaction (+2 more)17
Vehicle Emissionsaffects cotreatment, decreases reaction, increases secretion, increases abundance, decreases expression (+4 more)15
Benzo(a)pyrenedecreases reaction, affects expression, affects reaction, increases expression, increases reaction (+3 more)15
1-Methyl-4-phenylpyridiniumincreases reaction, increases cleavage, increases secretion, increases expression, decreases reaction (+1 more)15
bisphenol Aincreases abundance, decreases reaction, increases expression, increases reaction, affects expression (+5 more)14
3-(4-methylphenylsulfonyl)-2-propenenitrileaffects binding, increases cleavage, affects localization, increases phosphorylation, decreases secretion (+8 more)14
Cadmiumincreases reaction, decreases reaction, increases expression, increases abundance, increases secretion (+3 more)13
Indomethacinincreases abundance, affects cotreatment, increases secretion, increases activity, increases chemical synthesis (+5 more)12
nickel sulfateincreases expression, increases secretion, affects cotreatment, decreases reaction, decreases expression11

ChEMBL screening assays

26 unique, capped per target: 26 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1913641BindingInduction of IL-1 beta production in LPS-induced human THP-1 cells by ELISABerkeleyones and related meroterpenes from a deep water acid mine waste fungus that inhibit the production of interleukin 1-β from induced inflammasomes. — J Nat Prod

Cellosaurus cell lines

5 cell lines: 5 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B1AEAbcam THP-1 IL1B KOCancer cell lineMale
CVCL_B8IBAbcam HCT 116 IL1B KOCancer cell lineMale
CVCL_B8XBAbcam MCF-7 IL1B KOCancer cell lineFemale
CVCL_B9KKAbcam A-549 IL1B KOCancer cell lineMale
CVCL_E0EZUbigene HeLa IL1B KOCancer cell lineFemale

Clinical trials (associated diseases)

305 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00286351PHASE4COMPLETEDUse of Arimidex and Zoladex as Pretreatment to IVF in Women With Ovarian Endometriosis
NCT00621179PHASE4COMPLETEDEndometrial Markers and Response of Endometriosis Patients to Prolonged GnRH Agonist Prior to IVF
NCT00625950PHASE4COMPLETEDEndometriosis Patients Undergoing Quinagolide Treatment
NCT00654524PHASE4UNKNOWNRandomized Study of Gonadotropin-releasing-hormone Agonist (GnRH-a) or Expectant Management for Endometriosis
NCT00735852PHASE4COMPLETEDDecapeptyl SR With Livial Add Back Therapy in the Management of Chronic Cyclical Pelvic Pain in Pre Menopausal Women
NCT00844012PHASE4UNKNOWNContinuous Postoperative Use of Low-Dose Combined Oral Contraceptivesfor for Endometriosis-Related Chronic Pelvic Pain
NCT01056042PHASE4COMPLETEDEfficacy of Injectable Contraceptive and Oral Contraceptive Administered After Surgical Treatment of Endometriosis With Pain
NCT01581359PHASE4COMPLETEDThe Effect of Pre-treatment With GnRH Analogues Prior in Vitro Fertilization in Patients With Endometriosis
NCT01682642PHASE4COMPLETEDThe Influence of Adjuvant Medical Treatment of Peritoneal Endometriosis on the Outcome of IVF. A Prospective Randomized Analysis.
NCT01769781PHASE4COMPLETEDAnastrazole Plus GnRH-agonist in the Treatment of Endometriosis Recurrence
NCT01779232PHASE4COMPLETEDDanazol Treatment in Endometriosis Women Before IVF
NCT02158845PHASE4COMPLETEDLevonorgestrel-releasing Intrauterine System in Patients With Endometriosis
NCT02165917PHASE4UNKNOWNStudy to Compare Peritoneal Ablation by Excision Only and Excision With the Use of an Adhesion Barrier
NCT02213081PHASE4COMPLETEDUlipristal for Endometriosis-related Pelvic Pain
NCT02214550PHASE4COMPLETEDChronic Pain Risk Associated With Menstrual Period Pain
NCT02385448PHASE4UNKNOWNComparing the Use of Dienogest and Combined Oral Contraceptive Pills (Microgynon) to Reduce the Risk of Recurrence of Endometriotic Cyst After Conservative Surgery
NCT02387931PHASE4COMPLETEDSupplementation in Adolescent Girls With Endometriosis
NCT02393482PHASE4UNKNOWNPsychological Impact of Amenorrhea in Women With Endometriosis
NCT02427386PHASE4COMPLETEDHomeopathic Treatment of Chronic Pelvic Pain in Women With Endometriosis
NCT02475564PHASE4COMPLETEDResveratrol for Pain Due to Endometriosis
NCT02480647PHASE4COMPLETEDClinical Trial the Use of Levonorgestrel-releasing Intrauterine System Versus Etonogestrel Implant in Endometriosis
NCT02534688PHASE4COMPLETEDEffectiveness of Levonorgestrel-intrauterine System (LNG-IUS) Versus Depot Medroxyprogesterone Acetate (DMPA) in Treatment of Pelvic Pain in Clinically Diagnosed Endometriotic Patients
NCT02812186PHASE4COMPLETEDDeep Versus Moderate Neuromuscular Blockade During Laparoscopic Surgery
NCT04218487PHASE4UNKNOWNXuefu-Zhuyu Capsule for the Treatment of Qizhi Xueyu Zheng (Qi Stagnation and Blood Stasis Syndrome)
NCT04554693PHASE4ACTIVE_NOT_RECRUITINGThe Use of Low Dose Metronidazole to Decrease Postoperative Pain After Endometriosis Surgery
NCT04942015PHASE4UNKNOWNHonghuaruyi Wan for Endometriosis Dysmenorrhea
NCT05013242PHASE4UNKNOWNGoserline Acetate VS Dienogest in Endometriosi
NCT05059626PHASE4RECRUITINGEndometriosis and Microvascular Dysfunction; Simvastatin and Duavee
NCT05331053PHASE4TERMINATEDMicroRNA Activation of LOX-1 Mechanisms in Endometriosis
NCT05560230PHASE4COMPLETEDIntraoperative Clonidine for Postoperative Pain Management in Patients Undergoing Surgical Treatment for Endometriosis
NCT05962034PHASE4RECRUITINGThromboxane Function in Women With Endometriosis
NCT06523530PHASE4RECRUITINGEffect of a GnRH Analog on Hepatic Steatosis
NCT06543550PHASE4RECRUITINGComparison Between the Effects of Implantable Gestrinone and Oral Dienogest in the Treatment of Endometriosis
NCT06577233PHASE4RECRUITINGSuperior Hypogastric Nerve Plexus Block With Bupivacaine After Robotic Resection of Endometriosis
NCT06951802PHASE4RECRUITINGEndometriosis and Pain Treatment by Intraoperative Administration of Low-dose Ketamine
NCT07144904PHASE4NOT_YET_RECRUITINGAssessing the Efficacy of Indocyanine Green for Ureter Identification During Robot-Assisted Surgery in Advanced-Stage Endometriosis
NCT07182032PHASE4WITHDRAWNKetamine in Central Sensitization
NCT07532876PHASE4ENROLLING_BY_INVITATIONComparison of Elagolix and OCPs in Reducing Endometriosis Associated Pelvic Pain
NCT00225186PHASE3COMPLETEDSafety and Efficacy of SH T00660AA in Treatment of Endometriosis
NCT00225199PHASE3COMPLETEDEfficacy and Safety of SH T00660AA in Treatment of Endometriosis