ILF3
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Also known as NF90MPHOSPH4MPP4NFAR-1NFAR110NFAR-2TCP110NF110DRBP76NFAR90NF110bNF90aNF90cNF90ctvMPP4110
Summary
ILF3 (interleukin enhancer binding factor 3, HGNC:6038) is a protein-coding gene on chromosome 19p13.2, encoding Interleukin enhancer-binding factor 3 (Q12906). RNA-binding protein that plays an essential role in the biogenesis of circular RNAs (circRNAs) which are produced by back-splicing circularization of pre-mRNAs. It is a common-essential gene (DepMap: required in 97.4% of cancer cell lines).
This gene encodes a double-stranded RNA (dsRNA) binding protein that complexes with other proteins, dsRNAs, small noncoding RNAs, and mRNAs to regulate gene expression and stabilize mRNAs. This protein (NF90, ILF3) forms a heterodimer with a 45 kDa transcription factor (NF45, ILF2) required for T-cell expression of interleukin 2. This complex has been shown to affect the redistribution of nuclear mRNA to the cytoplasm. Knockdown of NF45 or NF90 protein retards cell growth, possibly by inhibition of mRNA stabilization. In contrast, an isoform (NF110) of this gene that is predominantly restricted to the nucleus has only minor effects on cell growth when its levels are reduced. Alternative splicing results in multiple transcript variants encoding distinct isoforms.
Source: NCBI Gene 3609 — RefSeq curated summary.
At a glance
- GWAS associations: 14
- Clinical variants (ClinVar): 242 total — 2 pathogenic
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 97.4% of screened cell lines (common-essential)
- MANE Select transcript:
NM_017620
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6038 |
| Approved symbol | ILF3 |
| Name | interleukin enhancer binding factor 3 |
| Location | 19p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | NF90, MPHOSPH4, MPP4, NFAR-1, NFAR110, NFAR-2, TCP110, NF110, DRBP76, NFAR90, NF110b, NF90a, NF90c, NF90ctv, MPP4110 |
| Ensembl gene | ENSG00000129351 |
| Ensembl biotype | protein_coding |
| OMIM | 603182 |
| Entrez | 3609 |
Gene structure
Transcript identifiers
Ensembl transcripts: 35 — 25 protein_coding, 6 nonsense_mediated_decay, 3 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000250241, ENST00000407004, ENST00000585835, ENST00000586544, ENST00000587505, ENST00000587840, ENST00000587928, ENST00000587941, ENST00000588657, ENST00000589052, ENST00000589173, ENST00000589283, ENST00000589416, ENST00000589485, ENST00000589600, ENST00000589998, ENST00000590009, ENST00000590261, ENST00000590869, ENST00000591649, ENST00000592763, ENST00000593061, ENST00000593199, ENST00000899691, ENST00000899692, ENST00000899693, ENST00000938413, ENST00000938414, ENST00000938415, ENST00000938416, ENST00000938417, ENST00000938418, ENST00000938419, ENST00000938420, ENST00000970392
RefSeq mRNA: 24 — MANE Select: NM_017620
NM_001137673, NM_001394808, NM_001394809, NM_001394810, NM_001394811, NM_001394812, NM_001394813, NM_001394814, NM_001394815, NM_001394816, NM_001394817, NM_001394818, NM_001394819, NM_001394820, NM_001394821, NM_001394822, NM_001394823, NM_001394824, NM_001394826, NM_001394827, NM_004516, NM_012218, NM_017620, NM_153464
CCDS: CCDS12246, CCDS12247, CCDS45965, CCDS45966, CCDS45967
Canonical transcript exons
ENST00000588657 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000888280 | 10681993 | 10682192 |
| ENSE00002746735 | 10689179 | 10692400 |
| ENSE00002827736 | 10654346 | 10654487 |
| ENSE00003535203 | 10683366 | 10683542 |
| ENSE00003535375 | 10681219 | 10681329 |
| ENSE00003550771 | 10679816 | 10679927 |
| ENSE00003555276 | 10681019 | 10681130 |
| ENSE00003559583 | 10683636 | 10683789 |
| ENSE00003559974 | 10670516 | 10670608 |
| ENSE00003564791 | 10682537 | 10682704 |
| ENSE00003577532 | 10677163 | 10677310 |
| ENSE00003581783 | 10679097 | 10679192 |
| ENSE00003584923 | 10680346 | 10680443 |
| ENSE00003604320 | 10683917 | 10683970 |
| ENSE00003652852 | 10683125 | 10683262 |
| ENSE00003677228 | 10671358 | 10671535 |
| ENSE00003682615 | 10687346 | 10687708 |
| ENSE00003687082 | 10688550 | 10688678 |
| ENSE00003690921 | 10678613 | 10678704 |
| ENSE00003787957 | 10670974 | 10671203 |
Expression profiles
Bgee: expression breadth ubiquitous, 303 present calls, max score 99.23.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 191.8387 / max 1731.8458, expressed in 1828 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 173834 | 123.5889 | 1828 |
| 173833 | 63.8251 | 1822 |
| 173837 | 1.9545 | 318 |
| 173842 | 0.8074 | 510 |
| 173839 | 0.7361 | 441 |
| 173836 | 0.4440 | 188 |
| 173840 | 0.3396 | 146 |
| 173835 | 0.1430 | 70 |
Top tissues by expression
303 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ganglionic eminence | UBERON:0004023 | 99.23 | gold quality |
| ventricular zone | UBERON:0003053 | 99.21 | gold quality |
| cortical plate | UBERON:0005343 | 98.92 | gold quality |
| embryo | UBERON:0000922 | 98.67 | gold quality |
| sural nerve | UBERON:0015488 | 98.37 | gold quality |
| left ovary | UBERON:0002119 | 98.24 | gold quality |
| right ovary | UBERON:0002118 | 98.22 | gold quality |
| right uterine tube | UBERON:0001302 | 98.19 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 98.03 | gold quality |
| adenohypophysis | UBERON:0002196 | 98.01 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 97.97 | gold quality |
| pituitary gland | UBERON:0000007 | 97.90 | gold quality |
| left uterine tube | UBERON:0001303 | 97.89 | gold quality |
| endocervix | UBERON:0000458 | 97.81 | gold quality |
| body of uterus | UBERON:0009853 | 97.78 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 97.70 | gold quality |
| ectocervix | UBERON:0012249 | 97.68 | gold quality |
| thyroid gland | UBERON:0002046 | 97.67 | gold quality |
| cerebellar cortex | UBERON:0002129 | 97.67 | gold quality |
| skin of abdomen | UBERON:0001416 | 97.62 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 97.62 | gold quality |
| right testis | UBERON:0004534 | 97.59 | gold quality |
| lymph node | UBERON:0000029 | 97.58 | gold quality |
| left testis | UBERON:0004533 | 97.55 | gold quality |
| granulocyte | CL:0000094 | 97.51 | gold quality |
| metanephros cortex | UBERON:0010533 | 97.47 | gold quality |
| skin of leg | UBERON:0001511 | 97.46 | gold quality |
| spleen | UBERON:0002106 | 97.36 | gold quality |
| secondary oocyte | CL:0000655 | 97.30 | gold quality |
| paraflocculus | UBERON:0005351 | 97.30 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 11.28 |
| E-GEOD-125970 | no | 3.48 |
| E-HCAD-31 | no | 2.59 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
7 targets.
| Target | Regulation |
|---|---|
| ACRV1 | Activation |
| BIRC5 | Activation |
| HLA-DQA1 | Unknown |
| HLA-DRA | Repression |
| HLA-DRB1 | Unknown |
| IL2 | Activation |
| PLAU | Activation |
Upstream regulators (CollecTRI, top): GLI2, ILF2, NR5A2, THRA
miRNA regulators (miRDB)
43 targeting ILF3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-4420 | 99.82 | 70.08 | 1624 |
| HSA-MIR-181B-2-3P | 99.81 | 70.06 | 1646 |
| HSA-MIR-181B-3P | 99.81 | 70.06 | 1646 |
| HSA-MIR-10394-5P | 99.65 | 66.83 | 1852 |
| HSA-MIR-1205 | 99.65 | 66.76 | 1826 |
| HSA-MIR-587 | 99.64 | 70.86 | 2611 |
| HSA-MIR-766-5P | 99.47 | 67.91 | 2225 |
| HSA-MIR-6839-3P | 99.39 | 68.86 | 1301 |
| HSA-MIR-6507-3P | 99.35 | 67.32 | 1059 |
| HSA-MIR-3191-5P | 99.24 | 66.52 | 1722 |
| HSA-MIR-4279 | 99.19 | 66.70 | 2437 |
| HSA-MIR-146A-3P | 99.13 | 68.99 | 1881 |
| HSA-MIR-371A-5P | 99.08 | 66.51 | 1914 |
| HSA-MIR-4717-3P | 99.06 | 66.34 | 1072 |
| HSA-MIR-12135 | 98.99 | 70.26 | 1814 |
| HSA-MIR-887-5P | 98.82 | 65.90 | 1347 |
| HSA-MIR-1537-5P | 98.70 | 68.33 | 999 |
| HSA-MIR-518C-5P | 98.53 | 69.20 | 1640 |
| HSA-MIR-6831-5P | 98.26 | 67.20 | 990 |
| HSA-MIR-4443 | 98.02 | 66.25 | 1928 |
| HSA-MIR-4275 | 97.96 | 68.42 | 1549 |
| HSA-MIR-10526-3P | 97.86 | 64.97 | 1342 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 97.4% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 40)
- plays important role in protein priming of HBV polymerase (PMID:11958450)
- Nuclear export of this protein is required for interleukin-2 mRNA stabilization. (PMID:12504009)
- Results describe the expression of four isoforms of nuclear factor 90, including NF110, by cDNA cloning and mass spectrometric analysis of proteins isolated from human cells (PMID:12946349)
- nuclear export of ILF3 is mediated by exportin-5 and minihelix-containing RNA (PMID:14570900)
- the multiple cellular functions, i.e., translation control, interleukin-2 enhancer binding, or cell division, of ILF3 are fulfilled by alternatively spliced isoforms. (PMID:14654356)
- NF90 and NF110 engage RNA differentially and translocate from the nucleus to the cytoplasm in mitosis (PMID:15811368)
- ADAR1 has the potential both to change information content through editing of mRNA and to regulate gene expression through interacting with NF90 (PMID:16055709)
- The human Nuclear Factor 90 c-terminal variant protein encoded by ILF3 interacts with Rev to inhibit Rev-mediated RNA transport. (PMID:17125513)
- Our results show that perturbation Tat/TAR RNA interaction by the dsRNA binding nuclear factor 90 protein is sufficient to inhibit transcriptional activation of HIV-1. (PMID:17565699)
- DRBP76/NF90 isoform facilitates VEGF expression by promoting VEGF mRNA loading onto polysomes (PMID:18039850)
- CD28 costimulation activates AKT to phosphorylate NF90 at Ser647 and phosphorylation triggers NF90 to relocate to the cytoplasm and stabilize IL-2 mRNA. (PMID:18097023)
- NFARs exert influence on mRNA trafficking and the modulation of translation rates and may constitute an innate immune translational surveillance mechanism important in host defense countermeasures against virus infection (PMID:18337511)
- Cell growth is retarded and giant multinucleated cells accumulate when the expression of NF45 or NF90, but not NF110, is reduced in HeLa cells. (PMID:18458058)
- MKP-1 upregulation by oxidative stress is potently influenced by increased mRNA stability and translation, mediated at least in part by the RNA-binding proteins HuR and NF90. (PMID:18490444)
- ILF-3, which has been known to regulate IL-2 expression in T cells, up-regulates synoviolin expression with GABPalpha in rheumatoid synovial cells (PMID:19116932)
- Results suggest that the association of the NF90-NF45 complex with pri-miRNAs impairs access of the Microprocessor complex to the pri-miRNAs, resulting in a reduction of mature miRNA production. (PMID:19398578)
- NF90 inhibits influenza virus replication during the early phase of infection through direct interaction with viral NP. (PMID:19494010)
- our results identify NF45 and NF90 as novel regulators of HS4-dependent human IL13 transcription in response to T cell activation (PMID:20051514)
- Data suggest that physiologic DRBP76 expression, isoform distribution and subcellular localization are profoundly altered upon malignant transformation. (PMID:20668518)
- associations of rs2569512 of ILF3 to myocardial infarction among individuals stratified by the absence or presence of hypertension, diabetes mellitus and chronic kidney disease (PMID:21347509)
- Production of HIV particles is regulated by altering sub-cellular localization and dynamics of Rev induced by double-strand RNA binding protein. (PMID:21364984)
- NF90 binds the dengue virus RNA 3’ terminus and is a positive regulator of dengue virus. (PMID:21386893)
- The relationship between rs6929846 of BTN2A1 or rs2569512 of ILF3 and myocardial infarction is influenced by the serum concentrations of high density lipoprotein cholesterol and low density lipoprotein cholesterol, respectively. (PMID:21468600)
- The protein polymorphism of Ilf3/NF90 and the various subcellular localizations of their isoforms may partially explain the various functions previously reported for these proteins. (PMID:21811582)
- The NF90/NF45 complex participates in DNA break repair via nonhomologous end joining (PMID:21969602)
- high expression of ERCC1, XPB and ILF3 was observed in human epithelial ovarian cancer (PMID:21971700)
- These data suggest that DRBP76, via its association with VP35, exerts an anti-Ebola virus function. (PMID:21987769)
- The unique C-terminal region of ILF3/NF110 is important for promoting survivin expression and for high affinity binding to YM155. (PMID:22442257)
- Data indicate that knockdown of interleukin enhancer-binding factor 3 (ILF3) leads to the increased levels of mature urokinase-type plasminogen activator (uPA) mRNA-targeting miRNAs miR-193a, miR-193b and miR-181a. (PMID:22986534)
- contributes to maintaining low levels of senescence-associated secretory phenotype factors in non-senescent cells (PMID:23117626)
- The function of NF90 in posttranscriptional gene regulation and microRNA biogenesis. [Review] (PMID:23965975)
- NF90 exerts antiviral activity through regulation of PKR phosphorylation and stress granules in infected cells. (PMID:24623135)
- These results suggest a novel molecular mechanism for the modulation of RNA granule assembly and disassembly by NFAR2, NF45, and phosphorylation at double-stranded RNA-activated kinase PKR sites. (PMID:24920670)
- Suppression of NF90 caused a decrease in the half-life of cyclin E1 mRNA (PMID:25399696)
- the role of the human NF90 protein isoforms in DNA and RNA virus replication (PMID:25447144)
- Data indicate the role of cyclin-dependent kinase inhibitor 1A (p21) and interleukin enhancer binding factor 3 (ILF3) pathway in mediating the anti-leukemic activity of sodium dichloroacetate (DCA) in oncoprotein p53null leukemic cells. (PMID:25544776)
- NF45 and NF90 are novel higher-eukaryote-specific factors required for the maturation of 60S ribosomal subunits. (PMID:26240280)
- Taken together, our discovery of the function of TCP80 and RHA in regulating p53 IRES and p53 induction following DNA damage provides a better understanding of the mechanisms that regulate IRES-mediated p53 translation in response to genotoxic stress. (PMID:26273641)
- The RNA binding complexes NF45-NF90 and NF45-NF110 associate dynamically with the c-fos gene and function as transcriptional coactivators. (PMID:26381409)
- data suggest that lncRNA SALNR modulates cellular senescence at least partly through changing NF90 activity (PMID:26491010)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ilf3b | ENSDARG00000105177 |
| mus_musculus | Ilf3 | ENSMUSG00000032178 |
| rattus_norvegicus | Ilf3 | ENSRNOG00000022741 |
| drosophila_melanogaster | loqs | FBGN0032515 |
| drosophila_melanogaster | CG12493 | FBGN0035571 |
| drosophila_melanogaster | blanks | FBGN0035608 |
| drosophila_melanogaster | Zn72D | FBGN0263603 |
| caenorhabditis_elegans | zfr-1 | WBGENE00022388 |
Paralogs (14): STAU2 (ENSG00000040341), ZFR (ENSG00000056097), ADAT1 (ENSG00000065457), ZFR2 (ENSG00000105278), STAU1 (ENSG00000124214), TARBP2 (ENSG00000139546), ADAD2 (ENSG00000140955), ILF2 (ENSG00000143621), ADAR (ENSG00000160710), ADAD1 (ENSG00000164113), STRBP (ENSG00000165209), PRKRA (ENSG00000180228), ADARB2 (ENSG00000185736), ADARB1 (ENSG00000197381)
Protein
Protein identifiers
Interleukin enhancer-binding factor 3 — Q12906 (reviewed: Q12906)
Alternative names: Double-stranded RNA-binding protein 76, M-phase phosphoprotein 4, Nuclear factor associated with dsRNA, Nuclear factor of activated T-cells 90 kDa, Translational control protein 80
All UniProt accessions (13): Q12906, K7EJ09, K7EKJ9, K7EKY0, K7ELV3, K7EM82, K7EMZ8, K7ENK6, K7EPG3, K7EQ75, K7EQR9, K7ER69, K7ERM6
UniProt curated annotations — full annotation on UniProt →
Function. RNA-binding protein that plays an essential role in the biogenesis of circular RNAs (circRNAs) which are produced by back-splicing circularization of pre-mRNAs. Within the nucleus, promotes circRNAs processing by stabilizing the regulatory elements residing in the flanking introns of the circularized exons. Plays thereby a role in the back-splicing of a subset of circRNAs. As a consequence, participates in a wide range of transcriptional and post-transcriptional processes. Binds to poly-U elements and AU-rich elements (AREs) in the 3’-UTR of target mRNAs. Upon viral infection, ILF3 accumulates in the cytoplasm and participates in the innate antiviral response. Mechanistically, ILF3 becomes phosphorylated and activated by the double-stranded RNA-activated protein kinase/PKR which releases ILF3 from cellular mature circRNAs. In turn, unbound ILF3 molecules are able to interact with and thus inhibit viral mRNAs. (Microbial infection) Plays a positive role in HIV-1 virus production by binding to and thereby stabilizing HIV-1 RNA, together with ILF3.
Subunit / interactions. Identified in a IGF2BP1-dependent mRNP granule complex containing untranslated mRNAs. Interacts with FUS and SMN. Interacts (via C-terminus) with PRMT1. Forms a complex with ILF2. Can also bind to PRKDC/XRCC7: this may stabilize the interaction of PRKDC/XRCC7 and the heterodimeric complex of XRCC6/KU70 and XRCC5/KU80. Forms a heteromeric complex with ZNF346 and ILF3. Found in a nuclear export complex with XPO5, ILF3, Ran and double-stranded RNA or double-stranded minihelix VA1 RNA. Found in a nuclear export complex with XPO5, RAN, ILF3, ZNF346 and double-stranded RNA. Interacts with XPO5 and ZNF346. Forms a complex with ILF2, YLPM1, KHDRBS1, RBMX, NCOA5 and PPP1CA. Interacts with AGO1 and AGO2. Interacts with DHX36; this interaction occurs in a RNA-dependent manner. Interacts with ELAVL1; this interaction occurs in a RNA-dependent manner. Interacts with HAVCR2; this interaction promotes ILF3 ubiquitination and subsequent degradation.
Subcellular location. Nucleus. Nucleolus. Cytoplasm.
Tissue specificity. Ubiquitous.
Post-translational modifications. Phosphorylated at Thr-188 and Thr-315 by PKR in response to certain RNA viruses. This phosphorylation results in the dissociation of ILF2 from the ILF2-ILF3 complex resulting in a cytoplasmic sequestration of ILF3 where it can bind to viral RNAs and impede viral replication. Methylated by protein arginine N-methyltransferase 1. Ubiquitinated at Lys-297 in a TRIM47-dependent manner; this ‘Lys-48’-linked ubiquitination promotes ILF3 degradation.
Miscellaneous. Dubious isoform produced through aberrant splice sites.
Isoforms (7)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q12906-1 | 1, NFAR-2, ILF3-E | yes |
| Q12906-2 | 2, NFAR-1, DRBP76 | |
| Q12906-3 | 3 | |
| Q12906-4 | 4, DRBP76 Alpha, ILF3-A | |
| Q12906-5 | 5, DRBP76 Delta, Gamma, ILF3-C | |
| Q12906-6 | 6 | |
| Q12906-7 | 7 |
RefSeq proteins (24): NP_001131145, NP_001381737, NP_001381738, NP_001381739, NP_001381740, NP_001381741, NP_001381742, NP_001381743, NP_001381744, NP_001381745, NP_001381746, NP_001381747, NP_001381748, NP_001381749, NP_001381750, NP_001381751, NP_001381752, NP_001381753, NP_001381755, NP_001381756, NP_004507, NP_036350, NP_060090, NP_703194 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006561 | DZF_dom | Domain |
| IPR014720 | dsRBD_dom | Domain |
| IPR033099 | DSRM1_ILF3 | Domain |
| IPR043519 | NT_sf | Homologous_superfamily |
| IPR049401 | DZF_dom_N | Domain |
| IPR049402 | DZF_dom_C | Domain |
Pfam: PF00035, PF07528, PF20965
UniProt features (71 total): modified residue 19, compositionally biased region 12, splice variant 9, sequence conflict 8, region of interest 6, cross-link 4, domain 3, helix 3, strand 3, sequence variant 2, chain 1, short sequence motif 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7RJQ | X-RAY DIFFRACTION | 1.72 |
| 3P1X | X-RAY DIFFRACTION | 1.9 |
| 7RJM | X-RAY DIFFRACTION | 2.1 |
| 2L33 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q12906-F1 | 67.74 | 0.43 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (23): 62, 100, 188, 190, 315, 382, 384, 460, 476, 477, 482, 592, 792, 810, 812, 816, 297, 348, 396, 489 …
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-9762293 | Regulation of CDH11 gene transcription |
| R-HSA-9833482 | PKR-mediated signaling |
MSigDB gene sets: 409 (showing top):
E2F_Q4, MODULE_52, HORIUCHI_WTAP_TARGETS_DN, E2F4DP1_01, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, PAL_PRMT5_TARGETS_UP, HOFMANN_CELL_LYMPHOMA_UP, MORF_UBE2I, GOBP_NEGATIVE_REGULATION_OF_VIRAL_PROCESS, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, MORF_HDAC1, MORF_UBE2N
GO Biological Process (8): protein phosphorylation (GO:0006468), negative regulation of translation (GO:0017148), negative regulation of viral genome replication (GO:0045071), negative regulation of DNA-templated transcription (GO:0045892), positive regulation of DNA-templated transcription (GO:0045893), defense response to virus (GO:0051607), spliceosome-depend formation of circular RNA (GO:0160091), symbiont entry into host cell (GO:0046718)
GO Molecular Function (7): virus receptor activity (GO:0001618), DNA binding (GO:0003677), RNA binding (GO:0003723), double-stranded RNA binding (GO:0003725), single-stranded RNA binding (GO:0003727), mRNA 3’-UTR AU-rich region binding (GO:0035925), protein binding (GO:0005515)
GO Cellular Component (9): extracellular region (GO:0005576), nucleus (GO:0005634), nucleoplasm (GO:0005654), nucleolus (GO:0005730), cytoplasm (GO:0005737), mitochondrion (GO:0005739), cytosol (GO:0005829), membrane (GO:0016020), ribonucleoprotein complex (GO:1990904)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Regulation of CDH11 Expression and Function | 1 |
| Antimicrobial mechanism of IFN-stimulated genes | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| DNA-templated transcription | 2 |
| regulation of DNA-templated transcription | 2 |
| nucleic acid binding | 2 |
| RNA binding | 2 |
| intracellular membrane-bounded organelle | 2 |
| nuclear lumen | 2 |
| cytoplasm | 2 |
| phosphorylation | 1 |
| protein modification process | 1 |
| translation | 1 |
| regulation of translation | 1 |
| negative regulation of gene expression | 1 |
| negative regulation of protein metabolic process | 1 |
| viral genome replication | 1 |
| regulation of viral genome replication | 1 |
| negative regulation of viral process | 1 |
| negative regulation of RNA biosynthetic process | 1 |
| positive regulation of RNA biosynthetic process | 1 |
| defense response | 1 |
| response to virus | 1 |
| mRNA splicing, via spliceosome | 1 |
| viral life cycle | 1 |
| symbiont entry into host | 1 |
| symbiont entry into host cell | 1 |
| exogenous protein binding | 1 |
| mRNA 3’-UTR binding | 1 |
| binding | 1 |
| intracellular membraneless organelle | 1 |
| intracellular anatomical structure | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
3148 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ILF3 | ILF2 | Q12905 | 988 |
| ILF3 | HNRNPL | P14866 | 972 |
| ILF3 | HNRNPA2B1 | P22626 | 940 |
| ILF3 | FUS | P35637 | 927 |
| ILF3 | HNRNPH1 | P31943 | 906 |
| ILF3 | XPO5 | Q9HAV4 | 869 |
| ILF3 | HNRNPM | P52272 | 869 |
| ILF3 | EIF2AK2 | P19525 | 865 |
| ILF3 | HNRNPC | P07910 | 854 |
| ILF3 | HNRNPH2 | P55795 | 832 |
| ILF3 | NONO | P30807 | 765 |
| ILF3 | MATR3 | P43243 | 765 |
| ILF3 | DHX9 | Q08211 | 754 |
| ILF3 | DICER1 | Q9UPY3 | 709 |
| ILF3 | HNRNPD | P07029 | 697 |
IntAct
325 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PTPN3 | YWHAQ | psi-mi:“MI:2364”(proximity) | 0.850 |
| IFIT2 | IFIT3 | psi-mi:“MI:0914”(association) | 0.780 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| PTPN3 | MCC | psi-mi:“MI:0914”(association) | 0.660 |
| IGF2BP1 | IGF2BP3 | psi-mi:“MI:0914”(association) | 0.640 |
| NCBP1 | KPNA3 | psi-mi:“MI:0914”(association) | 0.640 |
| NCBP2 | KPNA3 | psi-mi:“MI:0914”(association) | 0.640 |
| HNRNPL | HNRNPA2B1 | psi-mi:“MI:0914”(association) | 0.630 |
| HNRNPL | HNRNPA2B1 | psi-mi:“MI:0914”(association) | 0.620 |
| ILF3 | HNRNPA2B1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ILF3 | NS | psi-mi:“MI:0915”(physical association) | 0.550 |
| ILK | HAX1 | psi-mi:“MI:0914”(association) | 0.530 |
| ILF2 | IGF2BP3 | psi-mi:“MI:0914”(association) | 0.530 |
| CBX6 | IGF2BP3 | psi-mi:“MI:0914”(association) | 0.530 |
| SYNGAP1 | IGF2BP3 | psi-mi:“MI:0914”(association) | 0.530 |
| M | ILF3 | psi-mi:“MI:0915”(physical association) | 0.500 |
| ILF3 | M | psi-mi:“MI:0914”(association) | 0.500 |
| HNRNPL | ILF3 | psi-mi:“MI:0915”(physical association) | 0.500 |
| CFTR | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| RBM45 | HNRNPDL | psi-mi:“MI:0914”(association) | 0.460 |
| FUS | DDX3X | psi-mi:“MI:0914”(association) | 0.430 |
| CUEDC1 | ILF3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ILF3 | SPARC | psi-mi:“MI:0915”(physical association) | 0.400 |
| USP12 | ILF3 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (1314): ILF3 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), PLSCR1 (Two-hybrid), RBPMS (Two-hybrid), ILF3 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), ILF3 (Affinity Capture-MS)
ESM2 similar proteins: A5D7P8, A6QLK2, F1LQ48, O55047, O95628, P25916, P35226, P59326, P97855, Q08CW1, Q0VCY1, Q0VCZ3, Q12906, Q13148, Q13283, Q1ECX4, Q32KX7, Q32LC7, Q3SWT1, Q3ZBD9, Q4R5D9, Q5FVP2, Q5PRC7, Q5R601, Q5R8L2, Q5RB87, Q5SDR3, Q5U2U0, Q5ZLN5, Q64213, Q66K94, Q6DE02, Q6NRF9, Q86UE8, Q8BGW5, Q8BT14, Q8C0V0, Q8R2Y9, Q90ZY6, Q91YT7
Diamond homologs: O88532, Q08E27, Q0VD35, Q12906, Q562A2, Q5R6Y5, Q5REX3, Q5U231, Q5ZIL4, Q6DCD0, Q6DD04, Q6GL57, Q6GPM1, Q6NXA4, Q6PCR6, Q7TP98, Q91550, Q91WM1, Q96KR1, Q96SI9, Q9H898, Q9JIL3, Q9JKU6, Q9UPR6, Q9Z1X4, A2RFW8, A8AWC2, B5XKB7, B8GAM6, C0MCR4, P0DF14, P0DF15, P51400, P55265, P55266, P66670, P66672, P78563, P97473, P97616
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| AKT | “up-regulates activity” | ILF3 | phosphorylation |
| PRKCB | “up-regulates activity” | ILF3 | phosphorylation |
| AKT1 | “up-regulates activity” | ILF3 | phosphorylation |
| ILF3 | “form complex” | NF90-NF45 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 226 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| SARS-CoV-1 modulates host translation machinery | 6 | 11.8× | 2e-04 |
| Nonsense-Mediated Decay (NMD) | 7 | 10.4× | 1e-04 |
| mRNA Polyadenylation | 18 | 10.1× | 6e-11 |
| SARS-CoV-1-host interactions | 9 | 10.1× | 2e-05 |
| SARS-CoV-2 modulates host translation machinery | 7 | 10.0× | 2e-04 |
| Eukaryotic Translation Initiation | 5 | 9.8× | 3e-03 |
| Cap-dependent Translation Initiation | 5 | 9.8× | 3e-03 |
| Formation of the ternary complex, and subsequently, the 43S complex | 7 | 9.6× | 2e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| positive regulation of cytoplasmic translation | 6 | 30.2× | 9e-06 |
| alternative mRNA splicing, via spliceosome | 6 | 20.5× | 5e-05 |
| negative regulation of mRNA splicing, via spliceosome | 5 | 19.4× | 4e-04 |
| stress granule assembly | 6 | 18.3× | 8e-05 |
| regulation of alternative mRNA splicing, via spliceosome | 10 | 12.4× | 3e-06 |
| mRNA export from nucleus | 8 | 12.0× | 4e-05 |
| regulation of translational initiation | 5 | 11.9× | 3e-03 |
| mitophagy | 7 | 11.3× | 2e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
242 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 184 |
| Likely benign | 14 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2423585 | NC_000002.11:g.(?202501451)(202633608_?)del | Pathogenic |
| 375383 | NM_033066.3(MPP4):c.946T>C (p.Trp316Arg) | Pathogenic |
SpliceAI
2701 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:10654484:CAAGG:C | donor_loss | 1.0000 |
| 19:10654485:AAGGT:A | donor_loss | 1.0000 |
| 19:10654486:AGG:A | donor_loss | 1.0000 |
| 19:10654487:GGT:G | donor_loss | 1.0000 |
| 19:10654488:G:GG | donor_gain | 1.0000 |
| 19:10654488:GT:G | donor_loss | 1.0000 |
| 19:10654489:T:A | donor_loss | 1.0000 |
| 19:10670515:GA:G | acceptor_gain | 1.0000 |
| 19:10670968:CCCTA:C | acceptor_loss | 1.0000 |
| 19:10670969:CCTA:C | acceptor_loss | 1.0000 |
| 19:10670970:CTAG:C | acceptor_loss | 1.0000 |
| 19:10670971:TAGC:T | acceptor_loss | 1.0000 |
| 19:10670972:A:AG | acceptor_gain | 1.0000 |
| 19:10670972:A:AT | acceptor_loss | 1.0000 |
| 19:10670973:G:GG | acceptor_gain | 1.0000 |
| 19:10670973:GC:G | acceptor_gain | 1.0000 |
| 19:10670973:GCGTC:G | acceptor_gain | 1.0000 |
| 19:10671199:GCTGG:G | donor_gain | 1.0000 |
| 19:10671201:TGGG:T | donor_loss | 1.0000 |
| 19:10671202:GG:G | donor_gain | 1.0000 |
| 19:10671203:GG:G | donor_gain | 1.0000 |
| 19:10671203:GGTA:G | donor_loss | 1.0000 |
| 19:10671204:G:GA | donor_loss | 1.0000 |
| 19:10671204:G:GG | donor_gain | 1.0000 |
| 19:10671205:T:A | donor_loss | 1.0000 |
| 19:10671353:CTCA:C | acceptor_loss | 1.0000 |
| 19:10671355:CA:C | acceptor_loss | 1.0000 |
| 19:10671356:A:AG | acceptor_gain | 1.0000 |
| 19:10671356:AG:A | acceptor_gain | 1.0000 |
| 19:10671357:G:A | acceptor_gain | 1.0000 |
AlphaMissense
5837 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:10671001:G:C | D11H | 1.000 |
| 19:10671002:A:C | D11A | 1.000 |
| 19:10671002:A:T | D11V | 1.000 |
| 19:10671034:T:C | Y22H | 1.000 |
| 19:10671034:T:G | Y22D | 1.000 |
| 19:10671037:C:T | P23S | 1.000 |
| 19:10671038:C:A | P23Q | 1.000 |
| 19:10671053:T:A | L28Q | 1.000 |
| 19:10671053:T:C | L28P | 1.000 |
| 19:10671062:T:A | V31D | 1.000 |
| 19:10671065:A:C | Q32P | 1.000 |
| 19:10671066:G:C | Q32H | 1.000 |
| 19:10671066:G:T | Q32H | 1.000 |
| 19:10671086:A:T | E39V | 1.000 |
| 19:10671087:G:C | E39D | 1.000 |
| 19:10671087:G:T | E39D | 1.000 |
| 19:10671091:G:C | A41P | 1.000 |
| 19:10671092:C:A | A41E | 1.000 |
| 19:10671095:T:A | L42H | 1.000 |
| 19:10671095:T:C | L42P | 1.000 |
| 19:10671095:T:G | L42R | 1.000 |
| 19:10671097:A:G | K43E | 1.000 |
| 19:10671098:A:T | K43I | 1.000 |
| 19:10671099:A:C | K43N | 1.000 |
| 19:10671099:A:T | K43N | 1.000 |
| 19:10671104:T:A | V45E | 1.000 |
| 19:10671106:T:C | S46P | 1.000 |
| 19:10671390:T:A | L89Q | 1.000 |
| 19:10671390:T:C | L89P | 1.000 |
| 19:10671395:G:A | G91R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000108372 (19:10652476 A>G), RS1000131095 (19:10666195 G>C), RS1000247357 (19:10688890 C>G,T), RS1000327142 (19:10661056 A>G), RS1000378202 (19:10660806 T>G), RS1000384819 (19:10675259 T>G), RS1000464346 (19:10665145 T>G), RS1000608634 (19:10655535 A>G,T), RS1000618445 (19:10669433 G>T), RS1000675365 (19:10656563 C>G), RS1000690525 (19:10692424 C>A,G,T), RS1000713933 (19:10659901 A>C,G), RS1000869936 (19:10664524 C>G), RS1000889708 (19:10679245 T>C), RS1000958155 (19:10655653 T>A)
Disease associations
OMIM: gene MIM:603182 | disease phenotypes: MIM:607225, MIM:614424
GenCC curated gene-disease
Mondo (4): infantile-onset ascending hereditary spastic paralysis (MONDO:0011797), Joubert syndrome 14 (MONDO:0013745), intellectual disability (MONDO:0001071), strabismus (MONDO:0003432)
Orphanet (2): Infantile-onset ascending hereditary spastic paralysis (Orphanet:293168), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
14 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_723 | Obesity-related traits | 7.000000e-06 |
| GCST002647_162 | Height | 8.000000e-11 |
| GCST002702_28 | Height | 2.000000e-16 |
| GCST002738_5 | Psoriasis | 3.000000e-07 |
| GCST002874_22 | Psoriasis | 2.000000e-06 |
| GCST003268_37 | Psoriasis vulgaris | 8.000000e-07 |
| GCST004991_1 | White matter microstructure in first episode schizophrenia (left inferior parietal cortex) | 9.000000e-08 |
| GCST005527_36 | Psoriasis | 3.000000e-17 |
| GCST006959_18 | Rheumatoid arthritis | 9.000000e-10 |
| GCST007400_34 | Systemic lupus erythematosus | 7.000000e-06 |
| GCST007576_284 | Chronotype | 1.000000e-12 |
| GCST008103_119 | Bipolar disorder | 5.000000e-06 |
| GCST010456_3 | Anthracycline-induced cardiotoxicity in early breast cancer | 5.000000e-06 |
| GCST011624_3 | Tau burden | 6.000000e-08 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004530 | triglyceride measurement |
| EFO:1001494 | psoriasis vulgaris |
| EFO:0005674 | white matter microstructure measurement |
| EFO:0008328 | chronotype measurement |
| EFO:0005257 | response to anthracycline-based chemotherapy |
| EFO:1001482 | cardiotoxicity |
| EFO:0004760 | t-tau measurement |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D013285 | Strabismus | C10.292.562.887; C11.590.810 |
| C537217 | Hereditary spastic paralysis, infantile onset ascending (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5465305 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 366 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL2105734 | SEPANTRONIUM BROMIDE | 2 | 366 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs76966440 | ILF3 | 0.00 | 0 |
ChEMBL bioactivities
6 potent at pChembl≥5 of 6 total, top 6 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.76 | Kd | 17.44 | nM | CHEMBL5653589 |
| 7.76 | ED50 | 17.44 | nM | CHEMBL5653589 |
| 6.79 | Kd | 163 | nM | CHEMBL5411686 |
| 6.24 | Kd | 571 | nM | SEPANTRONIUM BROMIDE |
| 5.03 | Kd | 9386 | nM | CHEMBL3752910 |
| 5.03 | ED50 | 9386 | nM | CHEMBL3752910 |
PubChem BioAssay actives
4 with measured affinity, of 10 total; 4 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148583: Binding affinity to human ILF3 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0174 | uM |
| 1,3-dimethylnaphtho[2,3-f]benzimidazol-3-ium-4,11-dione iodide | 2025132: Binding affinity to ILF3 (unknown origin) assessed as dissociation constant at upto 1 uM by SPR method | kd | 0.1630 | uM |
| 1-(2-methoxyethyl)-2-methyl-3-(pyrazin-2-ylmethyl)benzo[f]benzimidazol-3-ium-4,9-dione bromide | 2025132: Binding affinity to ILF3 (unknown origin) assessed as dissociation constant at upto 1 uM by SPR method | kd | 0.5710 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148583: Binding affinity to human ILF3 incubated for 45 mins by Kinobead based pull down assay | kd | 9.3857 | uM |
CTD chemical–gene interactions
85 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases abundance, increases expression | 4 |
| Tretinoin | decreases expression | 4 |
| methylmercuric chloride | increases expression, affects cotreatment | 3 |
| bisphenol A | decreases expression | 3 |
| bisphenol F | affects cotreatment, decreases expression, increases expression | 2 |
| cobaltous chloride | decreases expression | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Caffeine | decreases phosphorylation, increases expression | 2 |
| Ozone | increases oxidation, affects expression, increases abundance, affects cotreatment | 2 |
| Valproic Acid | affects expression, decreases expression | 2 |
| FR900359 | affects phosphorylation | 1 |
| TAK-243 | decreases sumoylation | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| deoxynivalenol | increases expression | 1 |
| sodium arsenate | decreases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, decreases expression, affects localization, increases expression | 1 |
| trichostatin A | decreases expression, affects cotreatment | 1 |
| beta-lapachone | decreases expression, increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| sulindac sulfide | decreases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| cupric oxide | decreases phosphorylation | 1 |
| nivalenol | increases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation | 1 |
| beta-methylcholine | affects expression | 1 |
| epigallocatechin gallate | increases expression | 1 |
| tamibarotene | decreases expression | 1 |
ChEMBL screening assays
4 unique, capped per target: 4 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5379142 | Binding | Binding affinity to ILF3 (unknown origin) assessed as dissociation constant at upto 1 uM by SPR method | Pioneering 4,11-Dioxo-4,11-dihydro-1H-anthra[2,3-d]imidazol-3-ium Compounds as Promising Survivin Inhibitors by Targeting ILF3/NF110 for Cancer Therapy. — J Med Chem |
Clinical trials (associated diseases)
299 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT00461656 | PHASE4 | COMPLETED | Povidone-iodine Antisepsis for Strabismus Surgery |
| NCT01901588 | PHASE4 | COMPLETED | Efficacy of Single-Shot Dexmedetomidine Versus Placebo in Preventing Pediatric Emergence Delirium in Strabismus Surgery |
| NCT02379546 | PHASE4 | COMPLETED | The Effect of Anaesthesia Depth on Oculo-cardiac Reflex |
| NCT03349515 | PHASE4 | COMPLETED | The Effect of Povidone-iodine Ophthalmic Surgical Prep Solution on Respiration in Children Undergoing Strabismus Surgery With General Anesthesia. |
| NCT04549844 | PHASE4 | UNKNOWN | Peribulbar Block for Prevention of Oculocardiac Reflex |
| NCT06035757 | PHASE4 | RECRUITING | The Occurrence of Emergence Agitation in Pediatric Strabismus Surgery |
| NCT06560268 | PHASE4 | NOT_YET_RECRUITING | Low Flow Anesthesia in Children Undergoing Strabismus Surgery |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT00000128 | PHASE3 | UNKNOWN | A Trial of Bifocals in Myopic Children With Esophoria |
| NCT00001864 | PHASE3 | COMPLETED | Amblyopia (Lazy Eye) Treatment Study |
| NCT00038753 | PHASE3 | UNKNOWN | Vision In Preschoolers Study (VIP Study) |
| NCT01584843 | PHASE3 | COMPLETED | Efficacy and Safety of GSK1358820 (Botulinum Toxin Type A) in Patients With Strabismus |
| NCT04060771 | PHASE3 | UNKNOWN | Post-Operative Nausea and Vomiting in Children Submitted to Strabismus Surgery |
| NCT06863675 | PHASE3 | NOT_YET_RECRUITING | Highly Aspherical Lenslet (HAL) and Binocular Vision (BV) Disorders [HALT X(T) Study] |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT00478907 | PHASE2 | COMPLETED | Prevention of Complications of Eye Surgery |
| NCT06689943 | PHASE2 | NOT_YET_RECRUITING | Pain After Strabismus Surgery |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT00917982 | PHASE1 | UNKNOWN | The Effect of Vision Therapy/Orthoptic on Motor & Sensory Status of the 3 to 7 Years Old Strabismic Patients |
| NCT02246556 | PHASE1 | TERMINATED | Dichoptic Virtual Reality Therapy for Amblyopia in Adults |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): infantile-onset ascending hereditary spastic paralysis, Joubert syndrome 14, strabismus