IMMP2L
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Also known as IMP2
Summary
IMMP2L (inner mitochondrial membrane peptidase subunit 2, HGNC:14598) is a protein-coding gene on chromosome 7q31.1, encoding Mitochondrial inner membrane protease subunit 2 (Q96T52). Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.
This gene encodes a protein involved in processing the signal peptide sequences used to direct mitochondrial proteins to the mitochondria. The encoded protein resides in the mitochondria and is one of the necessary proteins for the catalytic activity of the mitochondrial inner membrane peptidase (IMP) complex. Two variants that encode the same protein have been described for this gene.
Source: NCBI Gene 83943 — RefSeq curated summary.
At a glance
- Gene–disease (curated): autism (Limited, GenCC)
- GWAS associations: 22
- Clinical variants (ClinVar): 149 total — 1 pathogenic
- Dosage sensitivity (ClinGen): haploinsufficiency dosage sensitivity unlikely, triplosensitivity no evidence
- MANE Select transcript:
NM_032549
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14598 |
| Approved symbol | IMMP2L |
| Name | inner mitochondrial membrane peptidase subunit 2 |
| Location | 7q31.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | IMP2 |
| Ensembl gene | ENSG00000184903 |
| Ensembl biotype | protein_coding |
| OMIM | 605977 |
| Entrez | 83943 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 7 protein_coding, 3 protein_coding_CDS_not_defined
ENST00000331762, ENST00000405709, ENST00000437687, ENST00000447215, ENST00000450877, ENST00000452753, ENST00000452895, ENST00000487733, ENST00000489381, ENST00000492938
RefSeq mRNA: 8 — MANE Select: NM_032549
NM_001244606, NM_001350959, NM_001350960, NM_001350961, NM_001350962, NM_001350963, NM_001350964, NM_032549
CCDS: CCDS5753, CCDS87540
Canonical transcript exons
ENST00000405709 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001318331 | 110886593 | 110886695 |
| ENSE00001558683 | 111561851 | 111562492 |
| ENSE00001561989 | 110662644 | 110663721 |
| ENSE00003513263 | 111487238 | 111487341 |
| ENSE00003587841 | 111521313 | 111521449 |
| ENSE00003687376 | 110963500 | 110963565 |
Expression profiles
Bgee: expression breadth ubiquitous, 223 present calls, max score 93.52.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.9174 / max 173.7446, expressed in 1623 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 85719 | 4.1633 | 1589 |
| 85708 | 0.3734 | 115 |
| 85707 | 0.1994 | 63 |
| 85710 | 0.1437 | 65 |
| 85709 | 0.0288 | 11 |
| 85711 | 0.0087 | 1 |
Top tissues by expression
246 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| tibialis anterior | UBERON:0001385 | 93.52 | silver quality |
| deltoid | UBERON:0001476 | 92.95 | silver quality |
| calcaneal tendon | UBERON:0003701 | 92.63 | gold quality |
| kidney epithelium | UBERON:0004819 | 91.00 | silver quality |
| quadriceps femoris | UBERON:0001377 | 90.62 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 90.52 | gold quality |
| vastus lateralis | UBERON:0001379 | 90.46 | silver quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 90.35 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 90.13 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 90.11 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 90.07 | gold quality |
| popliteal artery | UBERON:0002250 | 90.04 | gold quality |
| tibial artery | UBERON:0007610 | 90.04 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 89.86 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 89.74 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 89.51 | gold quality |
| sural nerve | UBERON:0015488 | 89.39 | gold quality |
| muscle tissue | UBERON:0002385 | 89.30 | gold quality |
| biceps brachii | UBERON:0001507 | 89.24 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 89.12 | silver quality |
| right coronary artery | UBERON:0001625 | 89.08 | gold quality |
| islet of Langerhans | UBERON:0000006 | 88.97 | gold quality |
| muscle of leg | UBERON:0001383 | 88.73 | gold quality |
| aorta | UBERON:0000947 | 88.71 | gold quality |
| gastrocnemius | UBERON:0001388 | 88.56 | gold quality |
| kidney | UBERON:0002113 | 88.37 | gold quality |
| colonic epithelium | UBERON:0000397 | 88.16 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 87.84 | gold quality |
| left coronary artery | UBERON:0001626 | 87.53 | gold quality |
| left ovary | UBERON:0002119 | 87.47 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-119 | yes | 44.88 |
| E-HCAD-35 | yes | 7.53 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
52 targeting IMMP2L, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-6748-5P | 100.00 | 65.81 | 1057 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-369-3P | 99.85 | 70.52 | 2264 |
| HSA-MIR-6875-3P | 99.82 | 70.26 | 2983 |
| HSA-MIR-655-3P | 99.80 | 72.19 | 2909 |
| HSA-MIR-3617-5P | 99.75 | 69.41 | 1968 |
| HSA-MIR-641 | 99.75 | 69.35 | 1975 |
| HSA-MIR-4446-5P | 99.72 | 69.19 | 2544 |
| HSA-MIR-4755-5P | 99.71 | 70.34 | 2716 |
| HSA-MIR-5006-3P | 99.71 | 70.26 | 2728 |
| HSA-MIR-1208 | 99.70 | 68.28 | 1533 |
| HSA-MIR-379-3P | 99.69 | 69.60 | 1524 |
| HSA-MIR-411-3P | 99.69 | 69.63 | 1524 |
| HSA-MIR-4527 | 99.66 | 67.43 | 714 |
| HSA-MIR-452-5P | 99.65 | 69.63 | 1762 |
Functional genomics
ClinGen dosage: haploinsufficiency 40 (dosage sensitivity unlikely), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 10)
- AUTS1/AUTS5 linkage to immp2l-dock4 may be involved in autism susceptibility (PMID:19401682)
- Five genes have been directly disrupted in Tourette Syndrome by independent genomic rearrangements and copy number variations with unique breakpoints. (PMID:22948383)
- genomic rearrangements affecting IMMP2L may be one of the predisposing factors involved in Tourette syndrome and overlapping neurodevelopmental disorders. (PMID:24549057)
- Chromosomal breakpoints involved the IMMP2L gene in 7q31 is associated with Diffuse Large B-Cell Lymphomas. (PMID:27356265)
- IMMP2L transcription requires Topoisomerase I in human primary astrocytes (PMID:27932244)
- Deficiency of IMMP2L in cells cultured under hypoxia and high glucose, exacerbated neuronal death. (PMID:28316022)
- While the IMMP2L deletions carried non-recurrent breakpoints, in contrast to previous reports, meta-analysis found no evidence of association (P > 0.05) between IMMP2L deletions and ASD. We also observed common exonic deletions impacting IMMP2L in a separate control (5,971 samples) cohort where subjects were screened for psychiatric conditions. (PMID:29152845)
- data would indicate that deletions involving the IMMP2L gene may contribute to the development of a subgroup of cognitive/behavioral disorders (PMID:29788020)
- Differential DNA Methylation of the IMMP2L Gene in Families with Maternally Inherited 7q31.1 Microdeletions is Associated with Intellectual Disability and Developmental Delay. (PMID:33849037)
- Exonic deletions in IMMP2L in schizophrenia with enhanced glycation stress subtype. (PMID:35776734)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | immp2l | ENSDARG00000004925 |
| mus_musculus | Immp2l | ENSMUSG00000056899 |
| rattus_norvegicus | Immp2l | ENSRNOG00000067070 |
| drosophila_melanogaster | CG11110 | FBGN0034535 |
| caenorhabditis_elegans | WBGENE00021925 |
Paralogs (1): IMMP1L (ENSG00000148950)
Protein
Protein identifiers
Mitochondrial inner membrane protease subunit 2 — Q96T52 (reviewed: Q96T52)
Alternative names: IMP2-like protein
All UniProt accessions (5): A0A0C4DG32, A4D0S9, C9JQE1, C9JVB0, Q96T52
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.
Subunit / interactions. Heterodimer of 2 subunits, IMMPL1 and IMMPL2.
Subcellular location. Mitochondrion inner membrane.
Tissue specificity. Expressed in all tissues tested except adult liver and lung.
Disease relevance. Gilles de la Tourette syndrome (GTS) [MIM:137580] Neurologic disorder manifested particularly by motor and vocal tics and associated with behavioral abnormalities. The disease may be caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the peptidase S26 family. IMP2 subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96T52-1 | 1 | yes |
| Q96T52-2 | 2 |
RefSeq proteins (8): NP_001231535, NP_001337888, NP_001337889, NP_001337890, NP_001337891, NP_001337892, NP_001337893, NP_115938* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000223 | Pept_S26A_signal_pept_1 | Family |
| IPR019533 | Peptidase_S26 | Domain |
| IPR019758 | Pept_S26A_signal_pept_1_CS | Conserved_site |
| IPR036286 | LexA/Signal_pep-like_sf | Homologous_superfamily |
| IPR037730 | IMP2 | Family |
Pfam: PF10502
UniProt features (6 total): active site 2, splice variant 2, chain 1, transmembrane region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96T52-F1 | 87.66 | 0.59 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 43; 91
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 187 (showing top):
GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_MITOCHONDRIAL_RESPIRATORY_CHAIN_COMPLEX_ASSEMBLY, GOBP_PROTEIN_TARGETING, GOBP_SUPEROXIDE_METABOLIC_PROCESS, FOXO4_01, GOBP_MALE_GAMETE_GENERATION, GOBP_ESTABLISHMENT_OF_PROTEIN_LOCALIZATION_TO_ORGANELLE, GOBP_GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY, GOBP_OVARIAN_FOLLICLE_DEVELOPMENT, GOBP_PROTEIN_MATURATION, MARTINEZ_RB1_TARGETS_DN, GOBP_REPRODUCTIVE_SYSTEM_DEVELOPMENT, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM4, GOBP_OVULATION, GOBP_ELECTRON_TRANSPORT_CHAIN
GO Biological Process (13): ovarian follicle development (GO:0001541), obsolete signal peptide processing (GO:0006465), obsolete protein processing involved in protein targeting to mitochondrion (GO:0006627), superoxide metabolic process (GO:0006801), DNA damage response (GO:0006974), spermatogenesis (GO:0007283), brain development (GO:0007420), blood circulation (GO:0008015), respiratory electron transport chain (GO:0022904), ovulation (GO:0030728), mitochondrial respiratory chain complex assembly (GO:0033108), cerebellum vasculature development (GO:0061300), proteolysis (GO:0006508)
GO Molecular Function (6): endopeptidase activity (GO:0004175), serine-type endopeptidase activity (GO:0004252), peptidase activity (GO:0008233), protein binding (GO:0005515), serine-type peptidase activity (GO:0008236), hydrolase activity (GO:0016787)
GO Cellular Component (6): mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), mitochondrial inner membrane peptidase complex (GO:0042720), membrane (GO:0016020), membrane protein complex (GO:0098796), serine-type endopeptidase complex (GO:1905370)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| peptidase activity | 2 |
| female gonad development | 1 |
| anatomical structure development | 1 |
| reactive oxygen species metabolic process | 1 |
| cellular response to stress | 1 |
| developmental process involved in reproduction | 1 |
| male gamete generation | 1 |
| central nervous system development | 1 |
| animal organ development | 1 |
| head development | 1 |
| circulatory system process | 1 |
| electron transport chain | 1 |
| cellular respiration | 1 |
| female gamete generation | 1 |
| multicellular organismal reproductive process | 1 |
| mitochondrion | 1 |
| mitochondrion organization | 1 |
| protein-containing complex assembly | 1 |
| vasculature development | 1 |
| protein metabolic process | 1 |
| endopeptidase activity | 1 |
| serine-type peptidase activity | 1 |
| hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| binding | 1 |
| serine hydrolase activity | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| inner mitochondrial membrane protein complex | 1 |
| serine-type endopeptidase complex | 1 |
| cellular anatomical structure | 1 |
| membrane | 1 |
| protein-containing complex | 1 |
| serine-type peptidase complex | 1 |
| endopeptidase complex | 1 |
Protein interactions and networks
STRING
1560 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| IMMP2L | SLITRK1 | Q96PX8 | 803 |
| IMMP2L | DIABLO | Q9NR28 | 777 |
| IMMP2L | CNTNAP2 | Q9UHC6 | 776 |
| IMMP2L | HDC | P19113 | 703 |
| IMMP2L | TBCD | Q9BTW9 | 662 |
| IMMP2L | SLITRK2 | Q9H156 | 647 |
| IMMP2L | NPTX1 | Q15818 | 637 |
| IMMP2L | MIPEP | Q99797 | 625 |
| IMMP2L | DOCK4 | Q8N1I0 | 612 |
| IMMP2L | SLC35F2 | Q8IXU6 | 598 |
| IMMP2L | XPNPEP3 | Q9NQH7 | 587 |
| IMMP2L | PMPCA | Q10713 | 575 |
| IMMP2L | DOP1B | Q9Y3R5 | 557 |
| IMMP2L | CYC1 | P08574 | 534 |
| IMMP2L | TRMT11 | Q7Z4G4 | 529 |
IntAct
10 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SPDEF | IMMP2L | psi-mi:“MI:0915”(physical association) | 0.400 |
| IMMP2L | ANKHD1-EIF4EBP3 | psi-mi:“MI:0914”(association) | 0.350 |
| CA14 | ORC4 | psi-mi:“MI:0914”(association) | 0.350 |
| AFG2A | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| AFG2B | MMP24OS | psi-mi:“MI:0914”(association) | 0.350 |
| IMMP2L | MRPL45 | psi-mi:“MI:2364”(proximity) | 0.270 |
| IMMP1L | NUDT19 | psi-mi:“MI:2364”(proximity) | 0.270 |
| LACTB | NUDT19 | psi-mi:“MI:2364”(proximity) | 0.270 |
| PARL | HAX1 | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (405): IMMP2L (Affinity Capture-RNA), IMMP2L (Proximity Label-MS), IMMP2L (Proximity Label-MS), IMMP2L (Proximity Label-MS), IMMP2L (Proximity Label-MS), COX15 (Proximity Label-MS), IMMT (Proximity Label-MS), CLPB (Proximity Label-MS), ADCK2 (Proximity Label-MS), ACOT1 (Proximity Label-MS), IARS2 (Proximity Label-MS), SHMT2 (Proximity Label-MS), SLC25A12 (Proximity Label-MS), SAMM50 (Proximity Label-MS), COX4I1 (Proximity Label-MS)
ESM2 similar proteins: A2AIG8, B2GV54, O35083, O73884, O75078, P16152, P35790, P54797, P58058, Q01134, Q08DW9, Q1JQE6, Q2HJ19, Q2KI92, Q3ZCD7, Q4R766, Q5E9H2, Q5E9T4, Q5EA19, Q5PQ63, Q5R890, Q5R8Y5, Q5RCU5, Q5XIJ5, Q5ZIN0, Q64232, Q6AYT7, Q6AZD4, Q6ICL3, Q6PIU2, Q8BGR6, Q8BLF1, Q8BPT6, Q8BZI6, Q8N2K0, Q8NBA8, Q8VDI9, Q95JH0, Q95JH2, Q96GS6
Diamond homologs: O74800, P00803, P0A1W2, P0A1W3, P26844, P28627, P46972, P9WKA0, P9WKA1, Q28I39, Q2KI92, Q5BIV4, Q5PQ63, Q6AZD4, Q6NLT8, Q89AM6, Q8BPT6, Q96LU5, Q96T52, Q9CQU8, Q9I5G7, Q9UST2, O67088, O04348, P72660, P73157, Q51876, Q84VZ6, Q8H0W1, Q9M9Z2, O33021, O07344, O07560, P59662, P0A067, P0A068, P0A069, P0A070, Q5HHB9, Q6GAW1
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
149 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 129 |
| Likely benign | 6 |
| Benign | 8 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 242956 | NC_000007.13:g.109049659_111130658del | Pathogenic |
SpliceAI
5423 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:110963496:TTA:T | donor_loss | 1.0000 |
| 7:110963497:TA:T | donor_loss | 1.0000 |
| 7:110963498:A:AC | donor_gain | 1.0000 |
| 7:110963498:AC:A | donor_gain | 1.0000 |
| 7:110963499:C:CA | donor_gain | 1.0000 |
| 7:110963499:CC:C | donor_gain | 1.0000 |
| 7:110963499:CCT:C | donor_gain | 1.0000 |
| 7:110963499:CCTG:C | donor_gain | 1.0000 |
| 7:110963499:CCTGA:C | donor_gain | 1.0000 |
| 7:110963561:GAGAC:G | acceptor_gain | 1.0000 |
| 7:110963562:AGAC:A | acceptor_gain | 1.0000 |
| 7:110963563:GAC:G | acceptor_gain | 1.0000 |
| 7:110963564:AC:A | acceptor_gain | 1.0000 |
| 7:110963564:ACC:A | acceptor_loss | 1.0000 |
| 7:110963565:CC:C | acceptor_gain | 1.0000 |
| 7:110963565:CCTA:C | acceptor_loss | 1.0000 |
| 7:110963566:C:CC | acceptor_gain | 1.0000 |
| 7:110963566:C:CG | acceptor_loss | 1.0000 |
| 7:110963572:C:CT | acceptor_gain | 1.0000 |
| 7:110963573:A:T | acceptor_gain | 1.0000 |
| 7:111091503:AG:A | donor_gain | 1.0000 |
| 7:111091504:GG:G | donor_gain | 1.0000 |
| 7:111091505:G:GG | donor_gain | 1.0000 |
| 7:111091505:GT:G | donor_loss | 1.0000 |
| 7:111099857:T:A | acceptor_gain | 1.0000 |
| 7:111210861:TGA:T | donor_gain | 1.0000 |
| 7:110663729:CA:C | acceptor_gain | 0.9900 |
| 7:110663730:A:C | acceptor_gain | 0.9900 |
| 7:110777101:A:AC | donor_gain | 0.9900 |
| 7:110777113:T:TA | donor_gain | 0.9900 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000011898 (7:111158274 A>G,T), RS1000020802 (7:111345426 C>G,T), RS1000021661 (7:111444531 G>A), RS1000021810 (7:110894022 T>C), RS1000024307 (7:111011959 C>T), RS1000026903 (7:110845201 G>C), RS1000029019 (7:111294585 G>C), RS1000030769 (7:111095758 A>G,T), RS1000032630 (7:110801461 A>G), RS1000033360 (7:111506035 A>T), RS1000038629 (7:111362001 A>G), RS1000040137 (7:110930508 T>C), RS1000040593 (7:111459459 TAATC>T), RS1000041418 (7:111015608 G>T), RS1000044428 (7:111199912 A>G)
Disease associations
OMIM: gene MIM:605977 | disease phenotypes: MIM:189800, MIM:602081
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autism | Limited | Autosomal dominant |
Mondo (4): preeclampsia (MONDO:0005081), primary ovarian failure (MONDO:0005387), childhood apraxia of speech (MONDO:0011184), autism (MONDO:0005260)
Orphanet (3): Preeclampsia (Orphanet:275555), Isolated childhood apraxia of speech (Orphanet:209908), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
22 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000477_26 | Cognitive performance | 3.000000e-06 |
| GCST002539_26 | Schizophrenia | 4.000000e-08 |
| GCST002539_68 | Schizophrenia | 3.000000e-13 |
| GCST002813_17 | Alzheimer’s disease in APOE e4+ carriers | 6.000000e-06 |
| GCST002936_25 | Cadmium levels | 9.000000e-07 |
| GCST003542_142 | Night sleep phenotypes | 3.000000e-06 |
| GCST003720_7 | Migraine | 2.000000e-08 |
| GCST004521_25 | Autism spectrum disorder or schizophrenia | 2.000000e-11 |
| GCST004946_10 | Schizophrenia | 8.000000e-13 |
| GCST006803_100 | Schizophrenia | 5.000000e-11 |
| GCST006803_73 | Schizophrenia | 2.000000e-09 |
| GCST007201_154 | Schizophrenia | 5.000000e-12 |
| GCST007201_280 | Schizophrenia | 5.000000e-12 |
| GCST007201_313 | Schizophrenia | 1.000000e-08 |
| GCST007201_77 | Schizophrenia | 5.000000e-11 |
| GCST008103_117 | Bipolar disorder | 5.000000e-06 |
| GCST008115_25 | Bipolar I disorder | 2.000000e-07 |
| GCST008595_189 | Cognitive ability, years of educational attainment or schizophrenia (pleiotropy) | 4.000000e-12 |
| GCST009600_117 | Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy) | 6.000000e-11 |
| GCST010989_126 | Body size at age 10 | 5.000000e-08 |
| GCST012046_7 | Fasting insulin | 6.000000e-07 |
| GCST90026416_15 | Mild age-related type 2 diabetes | 7.000000e-06 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0003926 | neuropsychological test |
| EFO:0009963 | bipolar I disorder |
| EFO:0004337 | intelligence |
| EFO:0004784 | self reported educational attainment |
| EFO:0009819 | comparative body size at age 10, self-reported |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001321 | Autistic Disorder | F03.625.164.113.500 |
| D011225 | Pre-Eclampsia | C12.050.703.395.249 |
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression, decreases methylation | 9 |
| Aflatoxin B1 | decreases expression, affects expression | 5 |
| lasiocarpine | decreases expression | 2 |
| methyleugenol | decreases expression | 2 |
| Cisplatin | affects cotreatment, decreases expression | 2 |
| N-Nitrosopyrrolidine | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| sodium arsenite | decreases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| AM 251 | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Irinotecan | decreases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| alpha-Chlorohydrin | decreases expression | 1 |
| Cadmium | increases expression, decreases reaction | 1 |
| Carbamazepine | affects expression | 1 |
| Ethyl Methanesulfonate | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Mustard Gas | decreases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
Cellosaurus cell lines
3 cell lines: 2 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D9H9 | Ubigene HEK293 IMMP2L KO | Transformed cell line | Female |
| CVCL_SS53 | HAP1 IMMP2L (-) 1 | Cancer cell line | Male |
| CVCL_XP80 | HAP1 IMMP2L (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
600 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00211796 | PHASE4 | COMPLETED | Divalproex Sodium ER in Adult Autism |
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT00409747 | PHASE4 | COMPLETED | Minocycline to Treat Childhood Regressive Autism |
| NCT00576732 | PHASE4 | COMPLETED | A Study of the Effectiveness and Safety of Two Doses of Risperidone in the Treatment of Children and Adolescents With Autistic Disorder |
| NCT00844753 | PHASE4 | COMPLETED | Atomoxetine, Placebo and Parent Management Training in Autism |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01098383 | PHASE4 | UNKNOWN | Treatment With Acetyl-Choline Esterase Inhibitors in Children With Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02069977 | PHASE4 | UNKNOWN | Study to Evaluate the Efficacy and Safety of Aripiprazole |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02199925 | PHASE4 | UNKNOWN | An Open-Label Study to Evaluate the Efficacy of High-Dose Gammaplex in Children on the Autism Spectrum |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02255565 | PHASE4 | COMPLETED | Dose Response Effects of Quillivant XR in Children With ADHD and Autism: A Pilot Study |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT00117546 | PHASE4 | UNKNOWN | Cardiovascular and Autonomic Reactivity in Women With a History of Pre-eclampsia |
| NCT00567957 | PHASE4 | UNKNOWN | Remifentanil for General Anesthesia in Preeclamptics |
| NCT01030627 | PHASE4 | COMPLETED | Treatment Approaches to Preeclampsia |
| NCT01352234 | PHASE4 | COMPLETED | Comparison of Doses of Acetylsalicylic Acid in Women With Previous History of Preeclampsia |
| NCT01361425 | PHASE4 | UNKNOWN | Anti-Hypertensive Treatment In Stable Pregnant Women With Severe Pre-Eclampsia (Metildopape) |
| NCT01729468 | PHASE4 | COMPLETED | Prevention of Pre-eclampsia and SGA by Low-Dose Aspirin in Nulliparous Women With Abnormal First-trimester Uterine Artery Dopplers |
| NCT01761916 | PHASE4 | COMPLETED | Clonidine Versus Captopril for Treatment of Postpartum Very High Blood Pressure |
| NCT01912677 | PHASE4 | COMPLETED | Oral Antihypertensive Regimens for Management of Hypertension in Pregnancy |
| NCT02025426 | PHASE4 | TERMINATED | Phenylephrine Versus Ephedrine in Pre-eclampsia |
| NCT02091401 | PHASE4 | COMPLETED | A Trial Comparing Treatment With the Springfusor Infusion Pump to the IV Magnesium Sulfate Regimen |
| NCT02163655 | PHASE4 | COMPLETED | Diuretics for Postpartum High Blood Pressure in Preeclampsia |
Related Atlas pages
- Associated diseases: autism
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): anorexia nervosa, attention deficit-hyperactivity disorder, autism, childhood apraxia of speech, migraine disorder, obsessive-compulsive disorder, preeclampsia, primary ovarian failure