IPO9-AS1

Summary

IPO9-AS1 (IPO9 antisense RNA 1, HGNC:40892) is a long non-coding RNA gene on chromosome 1q32.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40892
Approved symbol	IPO9-AS1
Name	IPO9 antisense RNA 1
Location	1q32.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231871
Ensembl biotype	lncRNA
Entrez	100873949
RNAcentral	URS000075CC49 — lncRNA, 842 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000413035, ENST00000421159, ENST00000421449

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413035 — 3 exons

Exon	Start	End
ENSE00001646489	201688259	201688413
ENSE00001657260	201817227	201817301
ENSE00001706034	201828951	201829559

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 96.51.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 2.9361 / max 62.7453, expressed in 1279 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
16677	2.3453	1156
16678	0.5908	297

Top tissues by expression

136 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
quadriceps femoris	UBERON:0001377	96.51	gold quality
cerebellar vermis	UBERON:0004720	95.83	gold quality
thymus	UBERON:0002370	85.39	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.95	gold quality
sural nerve	UBERON:0015488	80.73	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.58	gold quality
skeletal muscle tissue	UBERON:0001134	72.99	gold quality
bone marrow cell	CL:0002092	71.34	silver quality
cortical plate	UBERON:0005343	66.41	gold quality
ganglionic eminence	UBERON:0004023	65.92	gold quality
calcaneal tendon	UBERON:0003701	64.40	gold quality
apex of heart	UBERON:0002098	63.65	gold quality
stromal cell of endometrium	CL:0002255	63.49	gold quality
ventricular zone	UBERON:0003053	63.42	gold quality
granulocyte	CL:0000094	62.02	gold quality
monocyte	CL:0000576	61.91	gold quality
leukocyte	CL:0000738	61.74	gold quality
body of uterus	UBERON:0009853	61.59	gold quality
myometrium	UBERON:0001296	60.92	gold quality
right ovary	UBERON:0002118	60.59	gold quality
bone marrow	UBERON:0002371	60.57	gold quality
left ovary	UBERON:0002119	60.15	gold quality
ovary	UBERON:0000992	59.99	gold quality
placenta	UBERON:0001987	59.87	gold quality
endocervix	UBERON:0000458	59.52	gold quality
lymph node	UBERON:0000029	58.77	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	58.42	gold quality
uterine cervix	UBERON:0000002	58.38	gold quality
lower esophagus muscularis layer	UBERON:0035833	57.94	gold quality
lower esophagus	UBERON:0013473	57.88	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-HCAD-25	yes	18.22
E-ANND-3	no	2.51

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.