IQCH-AS1

Summary

IQCH-AS1 (IQCH antisense RNA 1, HGNC:44104) is a long non-coding RNA gene on chromosome 15q23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44104
Approved symbol	IQCH-AS1
Name	IQCH antisense RNA 1
Location	15q23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259673
Ensembl biotype	lncRNA
Entrez	100506686
RNAcentral	URS000075AF75 — lncRNA, 5966 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 27 lncRNA

ENST00000558025, ENST00000559285, ENST00000559298, ENST00000559702, ENST00000561232, ENST00000657717, ENST00000658166, ENST00000665615, ENST00000669759, ENST00000670822, ENST00000749875, ENST00000749876, ENST00000749877, ENST00000749878, ENST00000749879, ENST00000749880, ENST00000749881, ENST00000749882, ENST00000749883, ENST00000749884, ENST00000749885, ENST00000749886, ENST00000749887, ENST00000749888, ENST00000749889, ENST00000749890, ENST00000749891

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000558025 — 2 exons

Exon	Start	End
ENSE00002548323	67413503	67413538
ENSE00002563560	67408077	67408475

Expression profiles

Bgee: expression breadth ubiquitous, 209 present calls, max score 87.64.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.3795 / max 30.9950, expressed in 1461 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
150625	3.3795	1461

Top tissues by expression

242 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	87.64	gold quality
kidney epithelium	UBERON:0004819	84.37	silver quality
epithelial cell of pancreas	CL:0000083	82.98	silver quality
quadriceps femoris	UBERON:0001377	80.82	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.75	gold quality
vastus lateralis	UBERON:0001379	80.55	gold quality
oviduct epithelium	UBERON:0004804	80.07	gold quality
skeletal muscle tissue	UBERON:0001134	78.38	gold quality
biceps brachii	UBERON:0001507	78.26	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	78.15	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	78.08	gold quality
muscle tissue	UBERON:0002385	77.41	gold quality
mucosa of paranasal sinus	UBERON:0005030	77.36	silver quality
cardiac muscle of right atrium	UBERON:0003379	77.32	gold quality
left ventricle myocardium	UBERON:0006566	77.25	gold quality
hindlimb stylopod muscle	UBERON:0004252	76.04	gold quality
deltoid	UBERON:0001476	76.02	gold quality
muscle of leg	UBERON:0001383	75.79	gold quality
gastrocnemius	UBERON:0001388	75.19	gold quality
body of pancreas	UBERON:0001150	74.82	gold quality
colonic epithelium	UBERON:0000397	74.42	gold quality
pancreas	UBERON:0001264	74.17	gold quality
superficial temporal artery	UBERON:0001614	74.09	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.56	gold quality
bone marrow cell	CL:0002092	73.38	gold quality
pancreatic ductal cell	CL:0002079	73.29	silver quality
corpus epididymis	UBERON:0004359	73.24	gold quality
subcutaneous adipose tissue	UBERON:0002190	73.14	gold quality
islet of Langerhans	UBERON:0000006	72.99	gold quality
metanephros cortex	UBERON:0010533	72.30	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.83

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.