IRAG1
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Also known as JAW1LIRAG
Summary
IRAG1 (inositol 1,4,5-triphosphate receptor associated 1, HGNC:7237) is a protein-coding gene on chromosome 11p15.4, encoding Inositol 1,4,5-triphosphate receptor associated 1 (Q9Y6F6). Plays a role as NO/PRKG1-dependent regulator of IP3-induced calcium release; its phosphorylation by PRKG1 inhibits bradykinin and IP3-induced calcium release from intracellular stores.
This gene is similar to a putative mouse tumor suppressor gene (Mrvi1) that is frequently disrupted by mouse AIDS-related virus (MRV). The encoded protein, which is found in the membrane of the endoplasmic reticulum, is similar to Jaw1, a lymphoid-restricted protein whose expression is down-regulated during lymphoid differentiation. This protein is a substrate of cGMP-dependent kinase-1 (PKG1) that can function as a regulator of IP3-induced calcium release. Studies in mouse suggest that MRV integration at Mrvi1 induces myeloid leukemia by altering the expression of a gene important for myeloid cell growth and/or differentiation, and thus this gene may function as a myeloid leukemia tumor suppressor gene. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene, and alternative translation start sites, including a non-AUG (CUG) start site, are used.
Source: NCBI Gene 10335 — RefSeq curated summary.
At a glance
- GWAS associations: 27
- Clinical variants (ClinVar): 196 total
- MANE Select transcript:
NM_130385
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7237 |
| Approved symbol | IRAG1 |
| Name | inositol 1,4,5-triphosphate receptor associated 1 |
| Location | 11p15.4 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | JAW1L, IRAG |
| Ensembl gene | ENSG00000072952 |
| Ensembl biotype | protein_coding |
| OMIM | 604673 |
| Entrez | 10335 |
Gene structure
Transcript identifiers
Ensembl transcripts: 17 — 9 protein_coding, 5 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000423302, ENST00000424001, ENST00000526414, ENST00000529068, ENST00000529448, ENST00000529471, ENST00000529547, ENST00000531107, ENST00000531308, ENST00000531786, ENST00000532037, ENST00000533631, ENST00000534266, ENST00000541483, ENST00000547195, ENST00000558540, ENST00000894514
RefSeq mRNA: 6 — MANE Select: NM_130385
NM_001098579, NM_001100163, NM_001100167, NM_001206880, NM_001206881, NM_130385
CCDS: CCDS44538, CCDS44540, CCDS55745, CCDS55746
Canonical transcript exons
ENST00000423302 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002156720 | 10573095 | 10576575 |
| ENSE00002197128 | 10693536 | 10693755 |
| ENSE00003459121 | 10633968 | 10634071 |
| ENSE00003472246 | 10591548 | 10591612 |
| ENSE00003479962 | 10606742 | 10606772 |
| ENSE00003486813 | 10580455 | 10580589 |
| ENSE00003514529 | 10603120 | 10603251 |
| ENSE00003522397 | 10623778 | 10623856 |
| ENSE00003550911 | 10594146 | 10594195 |
| ENSE00003556109 | 10593492 | 10593599 |
| ENSE00003585090 | 10629538 | 10629711 |
| ENSE00003605474 | 10627973 | 10628025 |
| ENSE00003612045 | 10581867 | 10581986 |
| ENSE00003612372 | 10652025 | 10652182 |
| ENSE00003613820 | 10625966 | 10626583 |
| ENSE00003642441 | 10609728 | 10609851 |
| ENSE00003649927 | 10628751 | 10628828 |
| ENSE00003666758 | 10600918 | 10601059 |
| ENSE00003686706 | 10627716 | 10627760 |
| ENSE00003688258 | 10604405 | 10604545 |
| ENSE00003690052 | 10631991 | 10632061 |
Expression profiles
Bgee: expression breadth ubiquitous, 240 present calls, max score 99.59.
FANTOM5 (CAGE): breadth broad, TPM avg 6.5155 / max 308.3211, expressed in 566 samples.
FANTOM5 promoters (17 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 118621 | 3.3272 | 465 |
| 118629 | 0.7768 | 119 |
| 118631 | 0.3383 | 79 |
| 118626 | 0.2631 | 138 |
| 118622 | 0.2494 | 115 |
| 118624 | 0.2273 | 137 |
| 118625 | 0.2153 | 120 |
| 118633 | 0.1915 | 91 |
| 118627 | 0.1636 | 86 |
| 118635 | 0.1635 | 96 |
Top tissues by expression
249 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| saphenous vein | UBERON:0007318 | 99.59 | gold quality |
| urethra | UBERON:0000057 | 98.47 | gold quality |
| right coronary artery | UBERON:0001625 | 98.34 | gold quality |
| ascending aorta | UBERON:0001496 | 98.26 | gold quality |
| thoracic aorta | UBERON:0001515 | 98.26 | gold quality |
| vena cava | UBERON:0004087 | 98.20 | gold quality |
| aorta | UBERON:0000947 | 98.18 | gold quality |
| popliteal artery | UBERON:0002250 | 98.12 | gold quality |
| tibial artery | UBERON:0007610 | 98.11 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 98.03 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 97.78 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 97.49 | gold quality |
| cardia of stomach | UBERON:0001162 | 97.45 | gold quality |
| lower esophagus | UBERON:0013473 | 97.43 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 97.41 | gold quality |
| coronary artery | UBERON:0001621 | 97.29 | gold quality |
| left coronary artery | UBERON:0001626 | 97.13 | gold quality |
| mucosa of stomach | UBERON:0001199 | 96.98 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 96.93 | gold quality |
| superficial temporal artery | UBERON:0001614 | 96.91 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 96.89 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 96.70 | gold quality |
| globus pallidus | UBERON:0001875 | 96.49 | gold quality |
| medial globus pallidus | UBERON:0002477 | 96.31 | gold quality |
| cauda epididymis | UBERON:0004360 | 96.14 | gold quality |
| ventral tegmental area | UBERON:0002691 | 96.13 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 96.11 | gold quality |
| left uterine tube | UBERON:0001303 | 95.53 | gold quality |
| myometrium | UBERON:0001296 | 95.50 | gold quality |
| pericardium | UBERON:0002407 | 95.50 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 62.29 |
| E-CURD-119 | yes | 16.88 |
| E-ANND-3 | yes | 10.52 |
| E-MTAB-2983 | no | 126.17 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): BCLAF1, BTF3
miRNA regulators (miRDB)
147 targeting IRAG1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-371A-3P | 99.99 | 66.77 | 91 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-3686 | 99.90 | 70.53 | 2432 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-4496 | 99.88 | 68.89 | 2236 |
| HSA-MIR-1321 | 99.84 | 65.30 | 1811 |
| HSA-MIR-4739 | 99.84 | 65.25 | 1832 |
Literature-anchored findings (GeneRIF, showing 10)
- Reports use of non-AUG (CUG) translation initiation codon in one of the transcript variants of MRVI1 gene in mouse and human. (PMID:10321731)
- IRAG appears to be essentially involved in the NO/cGK-dependent inhibition of InsP(3)-dependent Ca(2+)-signaling in colonic smooth muscle (PMID:14729908)
- cGMP-dependent protein kinase Ibeta binds to TFII-I and IRAG through a common interaction motif (PMID:16166082)
- These findings reveal that interaction between IRAG and InsP3RI has a central role in NO/cGMP-dependent inhibition of platelet aggregation and in vivo thrombosis. (PMID:16990611)
- IRAG is required for PKG1beta-regulated cyclic calcium release during motility of osteoclasts (PMID:20567233)
- In the present study we analyzed the structure and function of the human IRAG/MRVI1 gene (PMID:21865585)
- p.P186S substitution (rs35857561) in MRVI1 that segregated with moyamoya syndrome in both the Italian and German family. rs35857561 polymorphism in MRVI1 may be a genetic susceptibility factor for moyamoya in European patients with neurofibromatosis type 1. MRVI1 is a functional partner of ITPR1, PRKG1 and GUCY1A3, which are involved in response to nitric oxide. (PMID:30001348)
- forced expression of MRVI1 in miR-940 mimic transfected cells abolished the facilitation of miR-940 on cell proliferation, migration, and invasion of RL95-2 and KLE cells. In conclusion, our study demonstrates that miR-940 might function as a reliable diagnostic and prognostic signature in endometrial carcinoma. (PMID:31085718)
- Homozygous mutation in murine retrovirus integration site 1 gene associated with a non-syndromic form of isolated familial achalasia. (PMID:32573102)
- P53-induced MRVI1 mediates carcinogenesis of colorectal cancer. (PMID:32589066)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mrvi1 | ENSDARG00000074602 |
| mus_musculus | Irag1 | ENSMUSG00000005611 |
| rattus_norvegicus | Irag1 | ENSRNOG00000017767 |
Paralogs (1): IRAG2 (ENSG00000118308)
Protein
Protein identifiers
Inositol 1,4,5-triphosphate receptor associated 1 — Q9Y6F6 (reviewed: Q9Y6F6)
Alternative names: Inositol 1,4,5-trisphosphate receptor-associated cGMP kinase substrate, JAW1-related protein MRVI1, Protein MRVI1
All UniProt accessions (7): Q9Y6F6, E9PJ61, E9PNK7, E9PRG4, E9PRH0, H0YCL0, H0YDM7
UniProt curated annotations — full annotation on UniProt →
Function. Plays a role as NO/PRKG1-dependent regulator of IP3-induced calcium release; its phosphorylation by PRKG1 inhibits bradykinin and IP3-induced calcium release from intracellular stores. Recruits PRKG1 to the endoplasmic reticulum and may mediate the assembly of PRKG1 and ITPR1 in a macrocomplex. Involved in PRKG1 signaling cascade leading to inhibition of platelet activation and aggregation. Also mediates NO-dependent inhibition of calcium signaling in gastrointestinal smooth muscle contributing to NO-dependent relaxation. Plays a role in the regulation of cellular excitability by regulating the hyperpolarization-activated cyclic nucleotide-gated HCN4 channel activity.
Subunit / interactions. Part of cGMP kinase signaling complex at least composed of ACTA2/alpha-actin, CNN1/calponin H1, PLN/phospholamban, PRKG1 and ITPR1. Interacts with PRKG1/cGKI-beta and ITPR1/IP3R type I. Interacts with HCN4; regulates HCN4 channel activity.
Subcellular location. Cytoplasm. Perinuclear region. Sarcoplasmic reticulum. Membrane.
Tissue specificity. Expressed in the colon, rectum, and cultured colonic smooth muscle. Detected in various cancer cell lines.
Post-translational modifications. Phosphorylated by PRKG1/cGKI-beta; Ser-386 showed constitutive phosphorylation in platelets whereas Ser-676 is only phosphorylated in presence of cGMP and nitric oxide (NO); Ser-689 is phosphorylated in resting platelets but increases in presence of cGMP and NO. PRKG1 inhibitor prevents phosphorylation of Ser-676 and Ser-689 in response to NO and cGMP.
Induction. By silencing of the transcription factor BTF3.
Isoforms (9)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y6F6-9 | 9 | yes |
| Q9Y6F6-2 | 2, IRAG1A | |
| Q9Y6F6-3 | 3, IRAG1B | |
| Q9Y6F6-4 | 4 | |
| Q9Y6F6-5 | 5 | |
| Q9Y6F6-6 | 6 | |
| Q9Y6F6-7 | 7 | |
| Q9Y6F6-8 | 8 | |
| Q9Y6F6-1 | 1 |
RefSeq proteins (6): NP_001092049, NP_001093633, NP_001093637, NP_001193809, NP_001193810, NP_569056* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008677 | MRVI1 | Family |
Pfam: PF05781
UniProt features (44 total): compositionally biased region 9, splice variant 9, sequence conflict 8, region of interest 6, sequence variant 5, modified residue 4, chain 1, transmembrane region 1, coiled-coil region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y6F6-F1 | 56.94 | 0.14 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (4): 110, 386, 676, 689
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-418457 | cGMP effects |
| R-HSA-109582 | Hemostasis |
| R-HSA-392154 | Nitric oxide stimulates guanylate cyclase |
| R-HSA-418346 | Platelet homeostasis |
MSigDB gene sets: 148 (showing top):
FREAC2_01, GOBP_CIRCULATORY_SYSTEM_PROCESS, BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN, RORA1_01, XU_GH1_AUTOCRINE_TARGETS_UP, GOBP_NEGATIVE_REGULATION_OF_MUSCLE_CONTRACTION, GOBP_REGULATION_OF_SMOOTH_MUSCLE_CONTRACTION, TGACCTY_ERR1_Q2, CHANDRAN_METASTASIS_DN, CAGCTG_AP4_Q5, SRF_01, GOBP_REGULATION_OF_ANATOMICAL_STRUCTURE_SIZE, GOBP_NEGATIVE_REGULATION_OF_MULTICELLULAR_ORGANISMAL_PROCESS, SRF_C, GOBP_REGULATION_OF_MUSCLE_CONTRACTION
GO Biological Process (3): obsolete cGMP-mediated signaling (GO:0019934), relaxation of vascular associated smooth muscle (GO:0060087), negative regulation of smooth muscle contraction (GO:0045986)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (6): endoplasmic reticulum membrane (GO:0005789), sarcoplasmic reticulum (GO:0016529), platelet dense tubular network membrane (GO:0031095), perinuclear region of cytoplasm (GO:0048471), cytoplasm (GO:0005737), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Nitric oxide stimulates guanylate cyclase | 1 |
| Platelet homeostasis | 1 |
| Hemostasis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| vasodilation | 1 |
| relaxation of smooth muscle | 1 |
| negative regulation of smooth muscle contraction | 1 |
| smooth muscle contraction | 1 |
| regulation of smooth muscle contraction | 1 |
| negative regulation of muscle contraction | 1 |
| binding | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| endoplasmic reticulum | 1 |
| sarcoplasm | 1 |
| platelet dense tubular network | 1 |
| bounding membrane of organelle | 1 |
| cytoplasm | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1350 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| IRAG1 | ITPR1 | Q14643 | 931 |
| IRAG1 | PRKG1 | P14619 | 915 |
| IRAG1 | ITPR3 | Q14573 | 852 |
| IRAG1 | PEAR1 | Q5VY43 | 619 |
| IRAG1 | PDE5A | O76074 | 607 |
| IRAG1 | KNG1 | P01042 | 576 |
| IRAG1 | ASB5 | Q8WWX0 | 527 |
| IRAG1 | RYR3 | Q15413 | 506 |
| IRAG1 | BRCA1 | P38398 | 485 |
| IRAG1 | CALML4 | Q96GE6 | 483 |
| IRAG1 | CALML6 | Q8TD86 | 480 |
| IRAG1 | CALML5 | Q9NZT1 | 480 |
| IRAG1 | CALM1 | P02593 | 469 |
| IRAG1 | CALML3 | P27482 | 469 |
| IRAG1 | PTPRD | P23468 | 448 |
IntAct
12 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| APBA2 | USP20 | psi-mi:“MI:0915”(physical association) | 0.880 |
| APBA2 | USP33 | psi-mi:“MI:0915”(physical association) | 0.660 |
| IRAG1 | USP20 | psi-mi:“MI:0915”(physical association) | 0.400 |
| IRAG1 | USP33 | psi-mi:“MI:0915”(physical association) | 0.400 |
| IRAG1 | htpG | psi-mi:“MI:0915”(physical association) | 0.370 |
| IRAG1 | bipA | psi-mi:“MI:0915”(physical association) | 0.370 |
| IRAG1 | psi-mi:“MI:0915”(physical association) | 0.370 | |
| IRAG1 | iglC2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MME | psi-mi:“MI:0914”(association) | 0.350 | |
| RDX | RNF113A | psi-mi:“MI:0914”(association) | 0.350 |
| IRAG1 | ITPRID2 | psi-mi:“MI:0914”(association) | 0.350 |
| IRAG1 | ITPR2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (23): MRVI1 (Two-hybrid), MRVI1 (Biochemical Activity), MRVI1 (Affinity Capture-Western), MRVI1 (Affinity Capture-Western), ITPR1 (Affinity Capture-Western), PRKG1 (Affinity Capture-Western), PRKG1 (Two-hybrid), PRKG1 (Affinity Capture-Western), ITPR2 (Affinity Capture-MS), ITPR1 (Affinity Capture-MS), MRVI1 (Affinity Capture-MS), ITPR3 (Affinity Capture-MS), SSFA2 (Affinity Capture-MS), BOK (Affinity Capture-MS), USP25 (Affinity Capture-MS)
ESM2 similar proteins: A0A8I5ZM56, A2AG50, A2AI08, A2AJI0, A5D7K1, D4A4L4, E1C2Q8, F1LR10, O00515, O14529, O75128, O88573, O88735, P51825, P57016, Q14244, Q32LQ1, Q3KQU3, Q3U2K0, Q5JTD0, Q5NBX1, Q5PR69, Q5R7F9, Q5XHX2, Q5ZIA2, Q5ZJJ1, Q68DK7, Q6IPM2, Q6NV74, Q6NZF1, Q6PDH0, Q6PDM1, Q6PG95, Q6ZU35, Q86UU1, Q8CCJ4, Q8K124, Q8N7J2, Q8TD55, Q96PV7
Diamond homologs: Q12912, Q5RHB5, Q60664, Q9N1F0, Q9WUX5, Q9Y6F6, Q2T9R2, Q80VJ8, Q8N6L0
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| BTF3 | “down-regulates quantity by repression” | IRAG1 | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
196 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 148 |
| Likely benign | 13 |
| Benign | 5 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3933 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:10580479:T:TA | donor_gain | 1.0000 |
| 11:10580585:GGAAT:G | acceptor_gain | 1.0000 |
| 11:10580586:GAAT:G | acceptor_gain | 1.0000 |
| 11:10580587:AAT:A | acceptor_gain | 1.0000 |
| 11:10580588:AT:A | acceptor_gain | 1.0000 |
| 11:10580590:C:CC | acceptor_gain | 1.0000 |
| 11:10580590:CTGG:C | acceptor_loss | 1.0000 |
| 11:10581862:CTCA:C | donor_loss | 1.0000 |
| 11:10581863:TCA:T | donor_loss | 1.0000 |
| 11:10581864:CACCC:C | donor_loss | 1.0000 |
| 11:10581865:A:T | donor_loss | 1.0000 |
| 11:10581865:AC:A | donor_gain | 1.0000 |
| 11:10581865:ACC:A | donor_gain | 1.0000 |
| 11:10581866:C:CA | donor_loss | 1.0000 |
| 11:10581866:CC:C | donor_gain | 1.0000 |
| 11:10581866:CCC:C | donor_gain | 1.0000 |
| 11:10581987:C:CC | acceptor_gain | 1.0000 |
| 11:10591617:G:GC | acceptor_gain | 1.0000 |
| 11:10601059:CCTG:C | acceptor_loss | 1.0000 |
| 11:10601060:CT:C | acceptor_loss | 1.0000 |
| 11:10601061:T:A | acceptor_loss | 1.0000 |
| 11:10603252:C:CC | acceptor_gain | 1.0000 |
| 11:10627714:A:AC | donor_gain | 1.0000 |
| 11:10627715:C:CC | donor_gain | 1.0000 |
| 11:10627715:CAGG:C | donor_gain | 1.0000 |
| 11:10628826:CAG:C | acceptor_gain | 1.0000 |
| 11:10628827:AG:A | acceptor_gain | 1.0000 |
| 11:10628827:AGC:A | acceptor_loss | 1.0000 |
| 11:10628828:GCTG:G | acceptor_loss | 1.0000 |
| 11:10628829:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
5912 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:10600974:A:G | L646P | 1.000 |
| 11:10601007:A:G | L635P | 1.000 |
| 11:10604529:A:G | L532P | 1.000 |
| 11:10593574:A:T | V690D | 0.999 |
| 11:10593576:G:C | S689R | 0.999 |
| 11:10593576:G:T | S689R | 0.999 |
| 11:10593578:T:G | S689R | 0.999 |
| 11:10593582:C:A | R687S | 0.999 |
| 11:10593582:C:G | R687S | 0.999 |
| 11:10600961:T:A | K650N | 0.999 |
| 11:10600961:T:G | K650N | 0.999 |
| 11:10600981:C:G | A644P | 0.999 |
| 11:10601052:C:G | R620P | 0.999 |
| 11:10604463:C:G | R554P | 0.999 |
| 11:10604476:C:G | A550P | 0.999 |
| 11:10604527:A:G | S533P | 0.999 |
| 11:10604537:A:C | F529L | 0.999 |
| 11:10604537:A:T | F529L | 0.999 |
| 11:10604539:A:G | F529L | 0.999 |
| 11:10593571:G:T | A691D | 0.998 |
| 11:10593580:A:T | V688D | 0.998 |
| 11:10600962:T:A | K650I | 0.998 |
| 11:10600964:A:C | F649L | 0.998 |
| 11:10600964:A:T | F649L | 0.998 |
| 11:10600966:A:G | F649L | 0.998 |
| 11:10601003:C:A | K636N | 0.998 |
| 11:10601003:C:G | K636N | 0.998 |
| 11:10601020:A:C | Y631D | 0.998 |
| 11:10601028:A:C | M628R | 0.998 |
| 11:10601028:A:T | M628K | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000040027 (11:10595051 A>G), RS1000059501 (11:10679024 C>G,T), RS1000086305 (11:10692726 C>T), RS1000119272 (11:10572873 T>C), RS1000179507 (11:10605411 C>G,T), RS1000188099 (11:10586890 C>T), RS1000193391 (11:10668839 T>G), RS1000200565 (11:10659912 G>A), RS1000250718 (11:10622104 G>A), RS1000282586 (11:10673075 G>A), RS1000300547 (11:10611811 G>A), RS1000367048 (11:10666885 G>C), RS1000392670 (11:10573264 T>A,C), RS1000394190 (11:10603764 G>A), RS1000417148 (11:10573705 C>G,T)
Disease associations
OMIM: gene MIM:604673 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
27 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000693_4 | Platelet aggregation | 1.000000e-06 |
| GCST003720_33 | Migraine | 3.000000e-11 |
| GCST003986_13 | Migraine | 2.000000e-09 |
| GCST004599_20 | Mean platelet volume | 5.000000e-15 |
| GCST005337_18 | Headache | 5.000000e-09 |
| GCST007798_127 | Asthma | 1.000000e-07 |
| GCST007800_100 | Asthma (childhood onset) | 1.000000e-11 |
| GCST008171_17 | Platelet aggregation | 6.000000e-07 |
| GCST008171_19 | Platelet aggregation | 8.000000e-07 |
| GCST008171_23 | Platelet aggregation | 2.000000e-06 |
| GCST008171_27 | Platelet aggregation | 4.000000e-06 |
| GCST008171_31 | Platelet aggregation | 6.000000e-06 |
| GCST008403_19 | Arterial stiffness index | 3.000000e-08 |
| GCST008916_71 | Asthma | 2.000000e-08 |
| GCST009391_1443 | Metabolite levels | 5.000000e-06 |
| GCST010042_53 | Asthma | 4.000000e-09 |
| GCST010043_46 | Asthma | 2.000000e-10 |
| GCST010083_260 | Hemoglobin levels | 1.000000e-09 |
| GCST010244_431 | Triglyceride levels | 1.000000e-09 |
| GCST90002383_30 | Hematocrit | 7.000000e-16 |
| GCST90002384_286 | Hemoglobin | 4.000000e-17 |
| GCST90002395_79 | Mean platelet volume | 3.000000e-33 |
| GCST90002402_342 | Platelet count | 1.000000e-17 |
| GCST90002403_243 | Red blood cell count | 3.000000e-10 |
| GCST90007007_2 | Gut microbiota relative abundance (Sutterella) | 7.000000e-06 |
| GCST90014033_98 | Haemorrhoidal disease | 4.000000e-16 |
| GCST90014325_46 | Asthma | 6.000000e-09 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004517 | arterial stiffness measurement |
| EFO:0010409 | triacylglycerol 50:2 measurement |
| EFO:0004509 | hemoglobin measurement |
| EFO:0004530 | triglyceride measurement |
| EFO:0004348 | hematocrit |
| EFO:0004309 | platelet count |
| EFO:0004305 | erythrocyte count |
| EFO:0007874 | gut microbiome measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
27 total (human), top 27 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, affects cotreatment, decreases methylation | 2 |
| Smoke | increases abundance, increases expression | 2 |
| bisphenol F | affects cotreatment, increases methylation | 1 |
| methyleugenol | decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| trimellitic anhydride | decreases expression | 1 |
| mono-(2-ethylhexyl)phthalate | decreases expression | 1 |
| bisphenol S | increases methylation | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Dasatinib | increases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation, increases methylation | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | affects methylation, increases methylation | 1 |
| Bleomycin | decreases expression | 1 |
| Calcitriol | decreases expression | 1 |
| Coal | increases expression, increases abundance | 1 |
| Dexamethasone | increases expression | 1 |
| Estradiol | affects expression | 1 |
| Methotrexate | decreases expression | 1 |
| Nickel | decreases expression | 1 |
| Sodium Dodecyl Sulfate | increases expression | 1 |
| Thimerosal | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Okadaic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hemorrhoid