ITGA1-AS1

Summary

ITGA1-AS1 (ITGA1 antisense RNA 1, HGNC:59041) is a long non-coding RNA gene on chromosome 5q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59041
Approved symbol	ITGA1-AS1
Name	ITGA1 antisense RNA 1
Location	5q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000288539
Ensembl biotype	lncRNA
Entrez	144667561

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000652796

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000652796 — 4 exons

Exon	Start	End
ENSE00003857718	52868673	52868799
ENSE00003873570	52872695	52872925
ENSE00003874260	52872285	52872429
ENSE00003883336	52853183	52854978

Expression profiles

Bgee: expression breadth broad, 86 present calls, max score 74.04.

Top tissues by expression

86 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	74.04	gold quality
adrenal tissue	UBERON:0018303	67.19	gold quality
calcaneal tendon	UBERON:0003701	66.15	gold quality
urinary bladder	UBERON:0001255	64.72	gold quality
skeletal muscle tissue	UBERON:0001134	63.63	silver quality
liver	UBERON:0002107	62.78	gold quality
tonsil	UBERON:0002372	57.51	silver quality
kidney	UBERON:0002113	54.95	gold quality
adrenal gland	UBERON:0002369	54.71	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.56	silver quality
stomach	UBERON:0000945	54.14	gold quality
lung	UBERON:0002048	54.03	gold quality
monocyte	CL:0000576	52.10	silver quality
thoracic mammary gland	UBERON:0005200	52.06	gold quality
prefrontal cortex	UBERON:0000451	51.87	gold quality
islet of Langerhans	UBERON:0000006	50.83	silver quality
pancreas	UBERON:0001264	50.21	silver quality
placenta	UBERON:0001987	50.18	gold quality
muscle of leg	UBERON:0001383	49.61	gold quality
cortex of kidney	UBERON:0001225	49.47	gold quality
small intestine	UBERON:0002108	48.88	gold quality
duodenum	UBERON:0002114	48.56	silver quality
left adrenal gland cortex	UBERON:0035825	48.25	gold quality
frontal cortex	UBERON:0001870	47.33	gold quality
adult mammalian kidney	UBERON:0000082	47.31	gold quality
superior frontal gyrus	UBERON:0002661	47.30	silver quality
right lobe of liver	UBERON:0001114	47.24	silver quality
myometrium	UBERON:0001296	47.18	silver quality
intestine	UBERON:0000160	47.14	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	46.85	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-HCAD-30	no	55.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.