ITGA10
gene geneOn this page
Summary
ITGA10 (integrin subunit alpha 10, HGNC:6135) is a protein-coding gene on chromosome 1q21.1, encoding Integrin alpha-10 (O75578). Integrin alpha-10/beta-1 is a receptor for collagen.
Integrins are integral transmembrane glycoproteins composed of noncovalently linked alpha and beta chains. They participate in cell adhesion as well as cell-surface mediated signalling. This gene encodes an integrin alpha chain and is expressed at high levels in chondrocytes, where it is transcriptionally regulated by AP-2epsilon and Ets-1. The protein encoded by this gene binds to collagen. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 8515 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 169 total
- Druggable target: yes
- MANE Select transcript:
NM_003637
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6135 |
| Approved symbol | ITGA10 |
| Name | integrin subunit alpha 10 |
| Location | 1q21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000143127 |
| Ensembl biotype | protein_coding |
| OMIM | 604042 |
| Entrez | 8515 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 6 protein_coding, 1 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000369304, ENST00000468261, ENST00000481236, ENST00000539363, ENST00000889439, ENST00000889440, ENST00000889441, ENST00000965598
RefSeq mRNA: 3 — MANE Select: NM_003637
NM_001303040, NM_001303041, NM_003637
CCDS: CCDS72869, CCDS76204
Canonical transcript exons
ENST00000369304 — 30 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000958255 | 145904052 | 145904200 |
| ENSE00000958256 | 145902811 | 145902961 |
| ENSE00001002937 | 145904684 | 145904811 |
| ENSE00001002939 | 145896268 | 145896352 |
| ENSE00001002940 | 145897011 | 145897087 |
| ENSE00001002941 | 145897247 | 145897339 |
| ENSE00001002942 | 145901135 | 145901278 |
| ENSE00001002943 | 145902246 | 145902319 |
| ENSE00001002945 | 145896769 | 145896858 |
| ENSE00001002946 | 145899175 | 145899341 |
| ENSE00001002947 | 145906733 | 145906824 |
| ENSE00001002948 | 145906394 | 145906508 |
| ENSE00001002949 | 145897815 | 145897900 |
| ENSE00001002953 | 145898936 | 145899078 |
| ENSE00001002955 | 145902454 | 145902619 |
| ENSE00001002956 | 145898110 | 145898223 |
| ENSE00001002958 | 145900057 | 145900187 |
| ENSE00001002959 | 145901516 | 145901664 |
| ENSE00001002960 | 145897512 | 145897653 |
| ENSE00001068793 | 145895983 | 145896096 |
| ENSE00001068796 | 145893540 | 145893635 |
| ENSE00001068798 | 145895631 | 145895711 |
| ENSE00001068799 | 145901877 | 145902021 |
| ENSE00001068800 | 145893161 | 145893274 |
| ENSE00001068801 | 145900790 | 145900993 |
| ENSE00001068802 | 145895280 | 145895393 |
| ENSE00001449447 | 145891208 | 145892863 |
| ENSE00001920904 | 145909963 | 145910050 |
| ENSE00003492057 | 145907354 | 145907465 |
| ENSE00003642348 | 145907041 | 145907150 |
Expression profiles
Bgee: expression breadth ubiquitous, 201 present calls, max score 99.12.
FANTOM5 (CAGE): breadth broad, TPM avg 3.2645 / max 245.0869, expressed in 608 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 14151 | 2.9672 | 588 |
| 14152 | 0.2973 | 134 |
Top tissues by expression
285 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| tibia | UBERON:0000979 | 99.12 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 98.25 | gold quality |
| thoracic aorta | UBERON:0001515 | 97.57 | gold quality |
| cartilage tissue | UBERON:0002418 | 97.54 | gold quality |
| ascending aorta | UBERON:0001496 | 97.50 | gold quality |
| right coronary artery | UBERON:0001625 | 95.05 | gold quality |
| calcaneal tendon | UBERON:0003701 | 94.63 | gold quality |
| mucosa of stomach | UBERON:0001199 | 94.55 | gold quality |
| aorta | UBERON:0000947 | 94.13 | gold quality |
| periodontal ligament | UBERON:0008266 | 92.99 | gold quality |
| left coronary artery | UBERON:0001626 | 92.49 | gold quality |
| right lung | UBERON:0002167 | 92.23 | gold quality |
| popliteal artery | UBERON:0002250 | 91.73 | gold quality |
| tibial artery | UBERON:0007610 | 91.73 | gold quality |
| coronary artery | UBERON:0001621 | 91.36 | gold quality |
| tendon | UBERON:0000043 | 88.86 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 86.35 | gold quality |
| upper lobe of lung | UBERON:0008948 | 85.64 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 84.61 | gold quality |
| blood vessel layer | UBERON:0004797 | 84.34 | gold quality |
| tibial nerve | UBERON:0001323 | 84.22 | gold quality |
| sural nerve | UBERON:0015488 | 83.36 | gold quality |
| right atrium auricular region | UBERON:0006631 | 82.09 | gold quality |
| tibialis anterior | UBERON:0001385 | 81.10 | gold quality |
| secondary oocyte | CL:0000655 | 80.94 | gold quality |
| gastrocnemius | UBERON:0001388 | 80.64 | gold quality |
| cardiac atrium | UBERON:0002081 | 80.35 | gold quality |
| endocervix | UBERON:0000458 | 80.03 | gold quality |
| oocyte | CL:0000023 | 79.43 | gold quality |
| muscle of leg | UBERON:0001383 | 79.02 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-7 | yes | 322.00 |
| E-ENAD-21 | yes | 322.00 |
| E-GEOD-135922 | yes | 229.99 |
| E-CURD-112 | yes | 16.45 |
| E-ANND-3 | yes | 6.15 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F1, E2F3, ETS1, LRP3, RB1, SOX9, TFAP2A, TFAP2E
miRNA regulators (miRDB)
83 targeting ITGA10, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6798-5P | 100.00 | 65.77 | 699 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-LET-7A-2-3P | 99.87 | 70.53 | 1921 |
| HSA-MIR-3919 | 99.87 | 69.45 | 2489 |
| HSA-MIR-4779 | 99.86 | 66.50 | 1583 |
| HSA-LET-7G-3P | 99.85 | 70.43 | 1929 |
| HSA-MIR-3150A-3P | 99.76 | 64.44 | 1640 |
| HSA-MIR-6763-5P | 99.76 | 64.68 | 1767 |
| HSA-MIR-548AU-3P | 99.70 | 68.22 | 1373 |
| HSA-MIR-6715B-5P | 99.64 | 69.63 | 1420 |
| HSA-MIR-4756-3P | 99.62 | 66.30 | 1319 |
| HSA-MIR-4663 | 99.62 | 65.33 | 957 |
| HSA-MIR-1249-5P | 99.61 | 66.55 | 2049 |
| HSA-MIR-6797-5P | 99.61 | 66.55 | 2084 |
| HSA-MIR-7152-5P | 99.60 | 69.33 | 2094 |
| HSA-MIR-4269 | 99.55 | 69.89 | 1373 |
Literature-anchored findings (GeneRIF, showing 6)
- Mouse and human articular chondrocytes express extracellular splice variants of the alpha10 subunit (PMID:11731273)
- Analyses of the functional regulatory domains of the integrin alpha 10 promoter suggest that AP-2epsilon and Ets-1 are involved in the transcriptional regulation of this gene in chondrocytes. (PMID:16684505)
- Unique charge-dependent constraints on collagen recognition by integrin alpha10beta1 have been described. (PMID:27569273)
- CNS disease was associated with enhanced expression of cytoplasmic and membranous ITGA10 and nuclear PTEN (P < 0.0005, P = 0.002, P = 0.024, respectively). sCNSL presented decreased membranous CD44 and nuclear and cytoplasmic cadherin-11 expressions (P = 0.001, P = 0.006, P = 0.048, respectively). In PCNSL lactoferrin expression was upregulated (P < 0.0005). (PMID:28854563)
- Systematic screening identifies a 2-gene signature as a high-potential prognostic marker of undifferentiated pleomorphic sarcoma/myxofibrosarcoma. (PMID:31742892)
- ZIP10 drives osteosarcoma proliferation and chemoresistance through ITGA10-mediated activation of the PI3K/AKT pathway. (PMID:34706747)
Cross-species orthologs
10 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | itga10 | ENSDARG00000002507 |
| mus_musculus | Itga10 | ENSMUSG00000090210 |
| rattus_norvegicus | Itga10 | ENSRNOG00000021217 |
| drosophila_melanogaster | if | FBGN0001250 |
| drosophila_melanogaster | mew | FBGN0004456 |
| drosophila_melanogaster | ItgaPS4 | FBGN0034005 |
| drosophila_melanogaster | ItgaPS5 | FBGN0034880 |
| drosophila_melanogaster | scb | FBGN0286785 |
| caenorhabditis_elegans | WBGENE00002081 | |
| caenorhabditis_elegans | WBGENE00003929 |
Paralogs (17): ITGAL (ENSG00000005844), ITGA3 (ENSG00000005884), ITGA2B (ENSG00000005961), ITGA8 (ENSG00000077943), ITGAE (ENSG00000083457), ITGA6 (ENSG00000091409), ITGA4 (ENSG00000115232), ITGA7 (ENSG00000135424), ITGA11 (ENSG00000137809), ITGAV (ENSG00000138448), ITGAX (ENSG00000140678), ITGA9 (ENSG00000144668), ITGAD (ENSG00000156886), ITGA5 (ENSG00000161638), ITGA2 (ENSG00000164171), ITGAM (ENSG00000169896), ITGA1 (ENSG00000213949)
Protein
Protein identifiers
Integrin alpha-10 — O75578 (reviewed: O75578)
All UniProt accessions (1): O75578
UniProt curated annotations — full annotation on UniProt →
Function. Integrin alpha-10/beta-1 is a receptor for collagen.
Subunit / interactions. Heterodimer of an alpha and a beta subunit. Alpha-10 associates with beta-1.
Subcellular location. Membrane.
Tissue specificity. Widely expressed with highest expression in muscle and heart. Found in articular cartilage.
Domain organisation. The integrin I-domain (insert) is a VWFA domain. Integrins with I-domains do not undergo protease cleavage.
Similarity. Belongs to the integrin alpha chain family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O75578-1 | 1 | yes |
| O75578-2 | 2 | |
| O75578-3 | 3 |
RefSeq proteins (3): NP_001289969, NP_001289970, NP_003628* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000413 | Integrin_alpha | Family |
| IPR002035 | VWF_A | Domain |
| IPR013517 | FG-GAP | Repeat |
| IPR013519 | Int_alpha_beta-p | Repeat |
| IPR013649 | Integrin_alpha_Ig-like_1 | Domain |
| IPR028994 | Integrin_alpha_N | Homologous_superfamily |
| IPR032695 | Integrin_dom_sf | Homologous_superfamily |
| IPR036465 | vWFA_dom_sf | Homologous_superfamily |
| IPR048285 | Integrin_alpha_Ig-like_2 | Domain |
Pfam: PF00092, PF01839, PF08441, PF20805
UniProt features (51 total): binding site 12, glycosylation site 11, repeat 7, sequence variant 5, disulfide bond 4, splice variant 3, sequence conflict 3, topological domain 2, signal peptide 1, chain 1, transmembrane region 1, domain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O75578-F1 | 85.10 | 0.48 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (12): 494; 496; 498; 502; 558; 560; 562; 566; 620; 622; 624; 628
Disulfide bonds (4): 76–86, 666–675, 681–736, 789–795
Glycosylation sites (11): 98, 234, 336, 364, 733, 763, 839, 921, 1011, 1018, 1039
Function
Pathways and Gene Ontology
Reactome pathways
9 pathways
| ID | Pathway |
|---|---|
| R-HSA-216083 | Integrin cell surface interactions |
| R-HSA-447041 | CHL1 interactions |
| R-HSA-75892 | Platelet Adhesion to exposed collagen |
| R-HSA-109582 | Hemostasis |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-1474244 | Extracellular matrix organization |
| R-HSA-373760 | L1CAM interactions |
| R-HSA-422475 | Axon guidance |
| R-HSA-9675108 | Nervous system development |
MSigDB gene sets: 152 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, MODULE_45, MODULE_64, GOCC_CELL_SURFACE, MODULE_16, GGGTGGRR_PAX4_03, AAAYRNCTG_UNKNOWN, GOBP_CELL_CELL_ADHESION, PID_CXCR4_PATHWAY, AML_Q6, BLALOCK_ALZHEIMERS_DISEASE_UP, ONDER_CDH1_TARGETS_2_UP, MODULE_88, GFI1_01, AML1_01
GO Biological Process (4): cell-matrix adhesion (GO:0007160), integrin-mediated signaling pathway (GO:0007229), cell-cell adhesion (GO:0098609), cell adhesion (GO:0007155)
GO Molecular Function (4): collagen binding (GO:0005518), signaling receptor activity (GO:0038023), metal ion binding (GO:0046872), collagen binding involved in cell-matrix adhesion (GO:0098639)
GO Cellular Component (5): plasma membrane (GO:0005886), integrin complex (GO:0008305), cell surface (GO:0009986), integrin alpha10-beta1 complex (GO:0034680), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Extracellular matrix organization | 1 |
| L1CAM interactions | 1 |
| Hemostasis | 1 |
| Axon guidance | 1 |
| Nervous system development | 1 |
| Developmental Biology | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| cell-substrate adhesion | 1 |
| cell surface receptor signaling pathway | 1 |
| cell adhesion | 1 |
| cellular process | 1 |
| protein-containing complex binding | 1 |
| molecular transducer activity | 1 |
| cation binding | 1 |
| collagen binding | 1 |
| cell-matrix adhesion | 1 |
| cell-matrix adhesion mediator activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| protein complex involved in cell adhesion | 1 |
| plasma membrane signaling receptor complex | 1 |
| integrin complex | 1 |
Protein interactions and networks
STRING
624 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ITGA10 | ITGB8 | P26012 | 678 |
| ITGA10 | ITGB5 | P18084 | 677 |
| ITGA10 | ITGB3 | P05106 | 647 |
| ITGA10 | ITGB1 | P05556 | 629 |
| ITGA10 | ITGB2 | P05107 | 607 |
| ITGA10 | ITGB7 | P26010 | 600 |
| ITGA10 | ITGA1 | P56199 | 581 |
| ITGA10 | FN1 | P02751 | 548 |
| ITGA10 | COL1A1 | P02452 | 532 |
| ITGA10 | COL6A1 | P12109 | 530 |
| ITGA10 | LAMC3 | Q9Y6N6 | 529 |
| ITGA10 | RICTOR | Q6R327 | 522 |
| ITGA10 | ITGA2B | P08514 | 509 |
| ITGA10 | ITGB6 | P18564 | 505 |
| ITGA10 | COL3A1 | P02461 | 504 |
IntAct
2 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| Fabp3 | ITGA10 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (4): ITGA10 (Affinity Capture-MS), ITGA10 (Affinity Capture-MS), ITGB1 (Affinity Capture-Western), SLMAP (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A0JND9, E1BPW0, O14773, O18956, O35795, O55026, O75173, O75355, O75356, O75578, O89023, O93295, P08514, P08648, P11688, P17405, P49961, P55772, P56201, P79784, P97687, Q04519, Q0VD19, Q12794, Q32M88, Q49HH9, Q49KI5, Q5DRK1, Q5IS74, Q5MY95, Q5RFL1, Q5RFQ8, Q60HH1, Q6P3E7, Q6P6S9, Q717C1, Q717C2, Q7RTX0, Q8BFW6, Q8BNJ2
Diamond homologs: A2AX52, A6H584, A6NMZ7, A6QLN9, A8TX70, E7FF10, O00339, O08746, O42401, O75578, O89029, P05099, P05555, P11215, P12111, P15989, P20701, P20702, P34576, P51942, P61625, Q02388, Q13349, Q21281, Q21540, Q28902, Q3V0T4, Q63870, Q642A6, Q6PCB0, Q6UXI7, Q8C6K9, Q8NFW1, Q8R2Z5, Q90615, Q91145, Q923P0, Q95LI2, Q96P44, Q9P218
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RB1 | “up-regulates quantity by expression” | ITGA10 | “transcriptional regulation” |
| ITGA10 | “form complex” | “A10/b1 integrin” | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
169 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 163 |
| Likely benign | 4 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
4298 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:145893634:G:GC | acceptor_loss | 1.0000 |
| 1:145893634:G:GG | acceptor_gain | 1.0000 |
| 1:145893635:A:AC | acceptor_loss | 1.0000 |
| 1:145893635:A:AG | acceptor_gain | 1.0000 |
| 1:145893636:TA:T | acceptor_loss | 1.0000 |
| 1:145893638:CATA:C | acceptor_loss | 1.0000 |
| 1:145895277:G:GG | donor_gain | 1.0000 |
| 1:145900053:T:A | donor_loss | 1.0000 |
| 1:145900054:G:A | donor_loss | 1.0000 |
| 1:145900055:GG:G | donor_loss | 1.0000 |
| 1:145900186:GA:G | acceptor_gain | 1.0000 |
| 1:145900186:GAGG:G | acceptor_gain | 1.0000 |
| 1:145900186:GAGGA:G | acceptor_gain | 1.0000 |
| 1:145900187:AGAG:A | acceptor_gain | 1.0000 |
| 1:145900786:T:G | donor_loss | 1.0000 |
| 1:145900787:GTCAG:G | donor_loss | 1.0000 |
| 1:145900788:GGTCA:G | donor_loss | 1.0000 |
| 1:145900789:AG:A | donor_loss | 1.0000 |
| 1:145900791:CCAGG:C | donor_loss | 1.0000 |
| 1:145900844:G:GT | donor_gain | 1.0000 |
| 1:145900992:GC:G | acceptor_gain | 1.0000 |
| 1:145900992:GCA:G | acceptor_gain | 1.0000 |
| 1:145900992:GCAGT:G | acceptor_gain | 1.0000 |
| 1:145901512:T:G | donor_loss | 1.0000 |
| 1:145901513:G:GA | donor_loss | 1.0000 |
| 1:145901514:GG:G | donor_loss | 1.0000 |
| 1:145901515:AGGTA:A | donor_loss | 1.0000 |
| 1:145901516:CAGGT:C | donor_loss | 1.0000 |
| 1:145901518:AGCAG:A | donor_loss | 1.0000 |
| 1:145901635:G:A | acceptor_gain | 1.0000 |
AlphaMissense
7529 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:145902501:A:G | L343P | 0.999 |
| 1:145902893:T:A | D276V | 0.999 |
| 1:145904750:C:A | W181C | 0.999 |
| 1:145904750:C:G | W181C | 0.999 |
| 1:145904775:T:A | D173V | 0.999 |
| 1:145904781:A:T | V171D | 0.999 |
| 1:145902501:A:T | L343Q | 0.998 |
| 1:145902896:G:A | T275I | 0.998 |
| 1:145902899:A:T | V274D | 0.998 |
| 1:145904732:G:C | F187L | 0.998 |
| 1:145904732:G:T | F187L | 0.998 |
| 1:145904734:A:G | F187L | 0.998 |
| 1:145904752:A:G | W181R | 0.998 |
| 1:145904752:A:T | W181R | 0.998 |
| 1:145904769:G:A | S175F | 0.998 |
| 1:145904774:A:C | D173E | 0.998 |
| 1:145904774:A:T | D173E | 0.998 |
| 1:145901983:C:A | W396C | 0.997 |
| 1:145901983:C:G | W396C | 0.997 |
| 1:145902815:A:T | I302N | 0.997 |
| 1:145902892:A:C | D276E | 0.997 |
| 1:145902892:A:T | D276E | 0.997 |
| 1:145902902:A:T | V273D | 0.997 |
| 1:145902908:A:G | L271P | 0.997 |
| 1:145904762:G:C | S177R | 0.997 |
| 1:145904762:G:T | S177R | 0.997 |
| 1:145904764:T:G | S177R | 0.997 |
| 1:145904769:G:T | S175Y | 0.997 |
| 1:145904770:A:G | S175P | 0.997 |
| 1:145904775:T:G | D173A | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000870831 (1:145908491 A>C), RS1001052461 (1:145895198 G>A,T), RS1001081990 (1:145894909 A>G), RS1002380307 (1:145908049 C>T), RS1002663329 (1:145906182 G>T), RS1002682830 (1:145907079 C>A,G), RS1002730456 (1:145900221 C>T), RS1002734233 (1:145907839 G>A,C), RS1002783212 (1:145899804 C>G), RS1003991073 (1:145909300 A>C), RS1004043912 (1:145893413 G>A,T), RS1004126917 (1:145909628 T>C), RS1005268205 (1:145903112 T>C), RS1005285608 (1:145894293 A>G), RS1005662913 (1:145907760 T>A,C)
Disease associations
OMIM: gene MIM:604042 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010241_375 | Apolipoprotein A1 levels | 5.000000e-10 |
| GCST010242_374 | HDL cholesterol levels | 3.000000e-10 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3430895 (PROTEIN COMPLEX), CHEMBL5882 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — Integrins
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tetrachlorodibenzodioxin | decreases expression, increases expression | 3 |
| sodium arsenite | decreases expression | 2 |
| methacrylaldehyde | increases abundance, affects cotreatment, increases expression | 2 |
| Acrolein | affects cotreatment, increases expression, increases abundance | 2 |
| Doxorubicin | decreases expression, increases expression | 2 |
| Ozone | affects cotreatment, increases expression, increases abundance | 2 |
| Progesterone | increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| OTX015 | decreases expression | 1 |
| mivebresib | decreases expression | 1 |
| peracetylated N-azidoacetylmannosamine | decreases expression | 1 |
| sotorasib | decreases expression, affects cotreatment | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases abundance | 1 |
| deoxynivalenol | decreases expression | 1 |
| mono-(2-ethylhexyl)phthalate | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases expression | 1 |
| Atrazine | increases expression | 1 |
| Calcitriol | decreases expression | 1 |
| Chelating Agents | affects binding, decreases expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Hydrocortisone | increases expression | 1 |
| Quercetin | increases expression | 1 |
| Rotenone | decreases expression | 1 |
| T-2 Toxin | decreases expression | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3368787 | Binding | Antagonist activity at alpha10beta1 integrin receptor (unknown origin) by cell-free ELISA | Strategies to inhibit tumor associated integrin receptors: rationale for dual and multi-antagonists. — J Med Chem |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D8NF | Ubigene HCT 116 ITGA10 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.