ITGAM
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Also known as HNA-4MAC-1CD11b
Summary
ITGAM (integrin subunit alpha M, HGNC:6149) is a protein-coding gene on chromosome 16p11.2, encoding Integrin alpha-M (P11215). Integrin ITGAM/ITGB2 is implicated in various adhesive interactions of monocytes, macrophages and granulocytes as well as in mediating the uptake of complement-coated particles and pathogens.
This gene encodes the integrin alpha M chain. Integrins are heterodimeric integral membrane proteins composed of an alpha chain and a beta chain. This I-domain containing alpha integrin combines with the beta 2 chain (ITGB2) to form a leukocyte-specific integrin referred to as macrophage receptor 1 (‘Mac-1’), or inactivated-C3b (iC3b) receptor 3 (‘CR3’). The alpha M beta 2 integrin is important in the adherence of neutrophils and monocytes to stimulated endothelium, and also in the phagocytosis of complement coated particles. Multiple transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 3684 — RefSeq curated summary.
At a glance
- Gene–disease (curated): systemic lupus erythematosus (Supportive, GenCC)
- GWAS associations: 24
- Clinical variants (ClinVar): 1,126 total
- Phenotypes (HPO): 44
- Druggable target: yes
- MANE Select transcript:
NM_000632
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6149 |
| Approved symbol | ITGAM |
| Name | integrin subunit alpha M |
| Location | 16p11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HNA-4, MAC-1, CD11b |
| Ensembl gene | ENSG00000169896 |
| Ensembl biotype | protein_coding |
| OMIM | 120980 |
| Entrez | 3684 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 8 protein_coding, 4 retained_intron
ENST00000544665, ENST00000561838, ENST00000565142, ENST00000567031, ENST00000567178, ENST00000569746, ENST00000570242, ENST00000648685, ENST00000882543, ENST00000943359, ENST00000943360, ENST00000943361
RefSeq mRNA: 2 — MANE Select: NM_000632
NM_000632, NM_001145808
CCDS: CCDS45470, CCDS54004
Canonical transcript exons
ENST00000544665 — 30 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001028855 | 31266030 | 31266147 |
| ENSE00001028857 | 31270954 | 31271084 |
| ENSE00001028860 | 31321241 | 31321371 |
| ENSE00001028868 | 31324651 | 31324782 |
| ENSE00001028953 | 31276671 | 31276744 |
| ENSE00001028959 | 31275549 | 31275699 |
| ENSE00001028971 | 31276920 | 31277049 |
| ENSE00001028975 | 31273365 | 31273518 |
| ENSE00001191829 | 31331165 | 31331275 |
| ENSE00001191835 | 31330504 | 31330605 |
| ENSE00001191837 | 31330308 | 31330421 |
| ENSE00001191843 | 31330081 | 31330164 |
| ENSE00001191849 | 31328147 | 31328230 |
| ENSE00001191883 | 31324399 | 31324553 |
| ENSE00001191889 | 31321464 | 31321627 |
| ENSE00001191904 | 31277967 | 31278109 |
| ENSE00001191919 | 31271847 | 31271992 |
| ENSE00001242102 | 31326856 | 31326935 |
| ENSE00001304825 | 31261692 | 31261797 |
| ENSE00001675692 | 31265811 | 31265881 |
| ENSE00001709132 | 31297745 | 31297954 |
| ENSE00001802514 | 31265395 | 31265498 |
| ENSE00002597219 | 31331636 | 31332877 |
| ENSE00002607129 | 31259975 | 31260092 |
| ENSE00003483095 | 31325500 | 31325622 |
| ENSE00003552124 | 31329228 | 31329303 |
| ENSE00003556782 | 31324958 | 31325031 |
| ENSE00003573799 | 31325263 | 31325404 |
| ENSE00003594689 | 31297514 | 31297654 |
| ENSE00003634755 | 31329798 | 31329905 |
Expression profiles
Bgee: expression breadth ubiquitous, 236 present calls, max score 98.90.
FANTOM5 (CAGE): breadth broad, TPM avg 16.8477 / max 994.4168, expressed in 493 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 153801 | 12.0102 | 483 |
| 153802 | 4.0570 | 353 |
| 153800 | 0.6411 | 138 |
| 207843 | 0.1395 | 62 |
Top tissues by expression
280 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| monocyte | CL:0000576 | 98.90 | gold quality |
| mononuclear cell | CL:0000842 | 98.84 | gold quality |
| leukocyte | CL:0000738 | 98.78 | gold quality |
| granulocyte | CL:0000094 | 98.59 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 98.15 | gold quality |
| bone marrow | UBERON:0002371 | 97.94 | gold quality |
| blood | UBERON:0000178 | 97.70 | gold quality |
| bone marrow cell | CL:0002092 | 97.00 | gold quality |
| spleen | UBERON:0002106 | 92.56 | gold quality |
| vermiform appendix | UBERON:0001154 | 90.95 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 90.27 | gold quality |
| upper lobe of lung | UBERON:0008948 | 89.92 | gold quality |
| decidua | UBERON:0002450 | 89.03 | gold quality |
| right lung | UBERON:0002167 | 88.39 | gold quality |
| synovial joint | UBERON:0002217 | 88.08 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 87.27 | gold quality |
| visceral pleura | UBERON:0002401 | 87.24 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 87.11 | gold quality |
| pleura | UBERON:0000977 | 87.10 | gold quality |
| lower lobe of lung | UBERON:0008949 | 86.64 | gold quality |
| parietal pleura | UBERON:0002400 | 86.59 | gold quality |
| right coronary artery | UBERON:0001625 | 86.28 | gold quality |
| lung | UBERON:0002048 | 85.87 | gold quality |
| omental fat pad | UBERON:0010414 | 85.57 | gold quality |
| peritoneum | UBERON:0002358 | 85.48 | gold quality |
| superficial temporal artery | UBERON:0001614 | 85.45 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 85.38 | gold quality |
| caecum | UBERON:0001153 | 85.02 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 83.93 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 83.66 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 22.95 |
| E-MTAB-9067 | yes | 13.49 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CCL3, CD34, HIF1A, HNRNPK, IRF4, SP1, SPI1, STAT3, ZNF148
miRNA regulators (miRDB)
30 targeting ITGAM, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3120-5P | 100.00 | 65.56 | 965 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-5010-3P | 99.83 | 70.60 | 2357 |
| HSA-MIR-4517 | 99.76 | 69.19 | 1867 |
| HSA-MIR-4530 | 99.69 | 66.47 | 1509 |
| HSA-MIR-7157-5P | 99.66 | 69.33 | 1829 |
| HSA-MIR-4310 | 99.59 | 68.84 | 2527 |
| HSA-MIR-4643 | 99.49 | 67.63 | 1791 |
| HSA-MIR-142-5P | 99.48 | 70.92 | 2416 |
| HSA-MIR-5590-3P | 99.48 | 70.91 | 2429 |
| HSA-MIR-8064 | 99.45 | 66.92 | 875 |
| HSA-MIR-4251 | 99.40 | 69.19 | 3363 |
| HSA-MIR-377-3P | 99.37 | 70.18 | 1905 |
| HSA-MIR-7151-5P | 99.37 | 67.82 | 613 |
| HSA-MIR-8070 | 99.07 | 69.30 | 1303 |
| HSA-MIR-6846-5P | 98.81 | 65.86 | 1121 |
| HSA-MIR-6848-5P | 98.81 | 65.49 | 1126 |
| HSA-MIR-603 | 98.58 | 68.28 | 1603 |
| HSA-MIR-654-3P | 98.38 | 67.61 | 905 |
| HSA-MIR-512-5P | 97.47 | 66.48 | 591 |
| HSA-MIR-342-3P | 96.44 | 67.48 | 1344 |
| HSA-MIR-5579-5P | 96.32 | 68.54 | 730 |
| HSA-MIR-1268A | 87.06 | 61.46 | 145 |
| HSA-MIR-1268B | 87.06 | 61.46 | 145 |
Literature-anchored findings (GeneRIF, showing 40)
- Mac-1 molecules mediated cell adhesion predominantly to fibrinogen, and its early degradation products, fragments X and Y (PMID:11881155)
- CD11b-mediated adhesion of myeloid leukemia cells in the course of induced monocytic differentiation is crucial for cell attachment, development of a monocytic phenotype and subsequent survival. (PMID:11893077)
- Respiratory syncytial virus enhances the expression of CD11b molecules by human eosinophils primed with platelet-activating factor (PMID:11937770)
- CD11b may play an important role in pathogenic process(in COPD) (PMID:11953106)
- fibroblasts prostaglandin-E2 is elevated in Alzheimer’s disease (prostaglandin-E2, PGE2) (PMID:12009501)
- Identification of integrin alpha(M)beta(2) as an adhesion receptor on human peripheral blood monocytes for Cyr61 and connective tissue growth factor: immediate-early gene products expressed in atherosclerotic lesions.(integrin alpha(M)beta(2)) (PMID:12036876)
- Impaired neutrophil actin assembly causes persistent expression and reduced primary granule exocytosis in Type II diabetes (PMID:12107753)
- Increased expression of CD11b/CD18 adhesion molecules was obtained in PV and ET patients, which could be associated with increased leukocyte adehesiveness contributing to the hypercoagulable state. (PMID:12145463)
- mediates type I phagocytosis under nonopsonic conditions and type II under opsonic conditions (PMID:12165526)
- The junctional adhesion molecule 3 (JAM-3) on human platelets is a counterreceptor for the leukocyte integrin Mac-1. (PMID:12208882)
- Histoplasma capsulatum inhibits apoptosis and Mac-1 expression in leucocytes. (PMID:12234260)
- Mac-1 (CD11b) is required for neutrophil-Fc alpha RI binding of secretory IgA and subsequent neutrophil activation. (PMID:12244179)
- investigation of molecular basis for broad ligand recognition (PMID:12377763)
- iIgA promotes neutrophil apoptosis through a mechanism dependent on Mac-1(CD11b) cooperation, which involves the activation of the respiratory burst (PMID:12377937)
- The mechanism that regulates the unmasking of the integrin alpha M cryptic binding site in the gamma C-domain of fibrinogen has been identified. (PMID:12390020)
- recognition of uPA by alpha(M)beta(2) allows for formation of a multicontact trimolecular complex, in which a single uPA ligand may bind to both uPAR and alpha(M)beta(2); interaction of uPA with each receptor influences cell adhesion and migration (PMID:12393547)
- ZBP-89 is a repressor of the human beta 2-integrin CD11b gene during differentiation of monocytes into macrophages (PMID:12393719)
- The same lectin domain within CD11b regulates both the cytotoxic and adhesion functions of Mac-1/CR3. (PMID:12444150)
- Stabilizing the integrin alpha M inserted domain in alternative conformations with a range of engineered disulfide bonds. (PMID:12466503)
- Mac-1 (CD11b/CD18) is crucial for effective Fc receptor-mediated immunity to melanoma. (PMID:12485936)
- Leptospira interrogans binds to the CR3 receptor on neutrophils (PMID:12495676)
- Adhesion of dendritic cells derived from CD34+ progenitors to resting human dermal microvascular endothelial cells is down-regulated upon maturation and partially depends on CD11a-CD18, CD11b-CD18 and CD36. (PMID:12516552)
- Level of expression of the adhesion molecule/complement receptor CD11b/CD18 and the chemokine receptor IL-8 receptor-A was also higher after vaginal delivery. (PMID:12576754)
- the expression of ICAM-1 might involve both p38 MAPK and NF-kappaB activities, whereas the regulation of CD11b, CD18, and ICAM-3 expressions might be mediated through p38 MAPK but not NF-kappaB. (PMID:12600815)
- uPAR up-regulated the Mac-1 adhesion to fibrinogen, and focal adhesion kinase and MAPK were involved in this regulation (PMID:12665127)
- ICAM-4 binds to the I domain of this integrin. (PMID:12694184)
- Fibrinogen-CD11b/CD18 interaction activates the NF-kappa B pathway and delays apoptosis in human neutrophils. (PMID:12731070)
- Our results indicate that induction of Ca2+ entry by the depletion of Ca2+ from intracellular stores upregulates CD11b/CD18 expression on eosinophils and primes eosinophil transmigration across lung epithelium. (PMID:12760968)
- three separate domains of alpha M beta 2 (the alpha MI-domain, the alpha M beta-propeller, and the beta 2I-domain) function together and contribute to the formation of the C3bi-binding site (PMID:12816955)
- The extracellular, membrane-proximal region of the CD11b receptor subunit plays an important role in integrin activation and therefore could be targeted by certain cell surface proteins as a conduit to control the integrin “inside-out” signaling process. (PMID:12847278)
- Interaction of proteinase 3 with CD11b/CD18 (beta2 integrin) on the cell membrane of human neutrophils. (PMID:12960243)
- cooperative engagement of CR3 on both the lectin-like site involved in beta-glucan binding and the I-domain involved in C3bi binding produces AA release (PMID:14532278)
- CD11b expression with the whole blood flow cytometry seemed feasible and reliable in the early diagnosis of neonatal sepsis. (PMID:14751053)
- assembly of Plg and uPA on integrin alpha(M)beta(2) regulates Plm activity and plays a crucial role in neutrophil-mediated thrombolysis (PMID:14769799)
- The interaction between Mac-1 and Thy-1 is involved in the adhesion of leukocytes to activated endothelial cells as well as in subsequent transendothelial migration of leukocytes into the perivascular tissue. (PMID:15004192)
- Some anti-Mart antibodies interfere with Mac-1-dependent cellular functions of neutrophils. (PMID:15073035)
- platelet-activating factor or interleukin 8 acted in concert with P-selectin for further enhancing the activation of alphaMbeta2 (PMID:15217824)
- Myeloid-related proteins-induced increased adhesion of monocytes to Fibronectin and upregulation of CD11b contribute to a facilitated accumulation of monocytes (PMID:15277376)
- BAP31 may play a role in regulating intracellular trafficking of CD11b/CD18 in neutrophils (PMID:15294914)
- studies of the interaction of the ligand binding alphaMI-domain of alphaMbeta2 with the D fragment of fibrinogen, which has multiple binding sites for integrin alphaMbeta2 (PMID:15304494)
Cross-species orthologs
9 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Itgam | ENSMUSG00000030786 |
| rattus_norvegicus | Itgad | ENSRNOG00000019728 |
| drosophila_melanogaster | if | FBGN0001250 |
| drosophila_melanogaster | mew | FBGN0004456 |
| drosophila_melanogaster | ItgaPS4 | FBGN0034005 |
| drosophila_melanogaster | ItgaPS5 | FBGN0034880 |
| drosophila_melanogaster | scb | FBGN0286785 |
| caenorhabditis_elegans | WBGENE00002081 | |
| caenorhabditis_elegans | WBGENE00003929 |
Paralogs (17): ITGAL (ENSG00000005844), ITGA3 (ENSG00000005884), ITGA2B (ENSG00000005961), ITGA8 (ENSG00000077943), ITGAE (ENSG00000083457), ITGA6 (ENSG00000091409), ITGA4 (ENSG00000115232), ITGA7 (ENSG00000135424), ITGA11 (ENSG00000137809), ITGAV (ENSG00000138448), ITGAX (ENSG00000140678), ITGA10 (ENSG00000143127), ITGA9 (ENSG00000144668), ITGAD (ENSG00000156886), ITGA5 (ENSG00000161638), ITGA2 (ENSG00000164171), ITGA1 (ENSG00000213949)
Protein
Protein identifiers
Integrin alpha-M — P11215 (reviewed: P11215)
Alternative names: CD11 antigen-like family member B, CR-3 alpha chain, Cell surface glycoprotein MAC-1 subunit alpha, Leukocyte adhesion receptor MO1, Neutrophil adherence receptor
All UniProt accessions (3): P11215, H3BMV4, I3NI33
UniProt curated annotations — full annotation on UniProt →
Function. Integrin ITGAM/ITGB2 is implicated in various adhesive interactions of monocytes, macrophages and granulocytes as well as in mediating the uptake of complement-coated particles and pathogens. It is identical with CR-3, the receptor for the iC3b fragment of the third complement component. It probably recognizes the R-G-D peptide in C3b. Integrin ITGAM/ITGB2 is also a receptor for fibrinogen and factor X. It recognizes P1 and P2 peptides of fibrinogen gamma chain. Regulates neutrophil migration. In association with beta subunit ITGB2/CD18, required for CD177-PRTN3-mediated activation of TNF primed neutrophils. Integrin ITGAM/ITGB2 is also a receptor for ICAM1 ligand ensuring adhesion between stimulated neutrophils and stimulated endothelial cells. May regulate phagocytosis-induced apoptosis in extravasated neutrophils. May play a role in mast cell development. Required with TYROBP/DAP12 in microglia to control production of microglial superoxide ions which promote the neuronal apoptosis that occurs during brain development.
Subunit / interactions. Heterodimer of an alpha and a beta subunit. ITGAM associates with ITGB2. Found in a complex with CD177 and ITGB2/CD18. Interacts with JAM3. Interacts with THBD. Interacts with complement factor H/CFH; this interaction mediates adhesion of neutrophils to pathogens leading to pathogen clearance. Interacts with TMEM268; this interaction inhibits ITGAM degradation via the endosome-lysosome pathway.
Subcellular location. Cell membrane. Membrane raft.
Tissue specificity. Predominantly expressed in monocytes and granulocytes. Expressed in neutrophils (at protein level).
Disease relevance. Systemic lupus erythematosus 6 (SLEB6) [MIM:609939] A chronic, relapsing, inflammatory, and often febrile multisystemic disorder of connective tissue, characterized principally by involvement of the skin, joints, kidneys and serosal membranes. It is of unknown etiology, but is thought to represent a failure of the regulatory mechanisms of the autoimmune system. The disease is marked by a wide range of system dysfunctions, an elevated erythrocyte sedimentation rate, and the formation of LE cells in the blood or bone marrow. Disease susceptibility may be associated with variants affecting the gene represented in this entry.
Domain organisation. The integrin I-domain (insert) is a VWFA domain. Integrins with I-domains do not undergo protease cleavage.
Similarity. Belongs to the integrin alpha chain family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P11215-1 | 1 | yes |
| P11215-2 | 2 |
RefSeq proteins (2): NP_000623, NP_001139280 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000413 | Integrin_alpha | Family |
| IPR002035 | VWF_A | Domain |
| IPR013517 | FG-GAP | Repeat |
| IPR013519 | Int_alpha_beta-p | Repeat |
| IPR013649 | Integrin_alpha_Ig-like_1 | Domain |
| IPR018184 | Integrin_alpha_C_CS | Conserved_site |
| IPR028994 | Integrin_alpha_N | Homologous_superfamily |
| IPR032695 | Integrin_dom_sf | Homologous_superfamily |
| IPR036465 | vWFA_dom_sf | Homologous_superfamily |
| IPR048285 | Integrin_alpha_Ig-like_2 | Domain |
| IPR048633 | ITGAX-like_Ig_3 | Domain |
Pfam: PF00092, PF00357, PF01839, PF08441, PF20805, PF21520
UniProt features (170 total): strand 77, helix 22, glycosylation site 19, turn 11, binding site 11, disulfide bond 10, repeat 7, sequence variant 4, topological domain 2, signal peptide 1, chain 1, short sequence motif 1, transmembrane region 1, splice variant 1, sequence conflict 1, domain 1
Structure
Experimental structures (PDB)
31 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1MF7 | X-RAY DIFFRACTION | 1.25 |
| 1NA5 | X-RAY DIFFRACTION | 1.5 |
| 8CE6 | X-RAY DIFFRACTION | 1.58 |
| 1IDO | X-RAY DIFFRACTION | 1.7 |
| 1JLM | X-RAY DIFFRACTION | 2 |
| 4XW2 | X-RAY DIFFRACTION | 2 |
| 8CE9 | X-RAY DIFFRACTION | 2.11 |
| 1M1U | X-RAY DIFFRACTION | 2.3 |
| 1N9Z | X-RAY DIFFRACTION | 2.5 |
| 9RM9 | ELECTRON MICROSCOPY | 2.6 |
| 1BHO | X-RAY DIFFRACTION | 2.7 |
| 1BHQ | X-RAY DIFFRACTION | 2.7 |
| 1IDN | X-RAY DIFFRACTION | 2.7 |
| 3Q3G | X-RAY DIFFRACTION | 2.7 |
| 7USL | ELECTRON MICROSCOPY | 2.7 |
| 7USM | ELECTRON MICROSCOPY | 2.7 |
| 9T5W | ELECTRON MICROSCOPY | 2.74 |
| 6RHW | X-RAY DIFFRACTION | 2.75 |
| 4M76 | X-RAY DIFFRACTION | 2.8 |
| 3QA3 | X-RAY DIFFRACTION | 3 |
| 9T5V | ELECTRON MICROSCOPY | 3.06 |
| 9T5Z | ELECTRON MICROSCOPY | 3.1 |
| 7P2D | X-RAY DIFFRACTION | 3.2 |
| 7AKK | X-RAY DIFFRACTION | 3.4 |
| 9T3Y | ELECTRON MICROSCOPY | 3.44 |
| 9GMU | X-RAY DIFFRACTION | 3.8 |
| 9RMA | ELECTRON MICROSCOPY | 3.94 |
| 2LKE | SOLUTION NMR | |
| 2LKJ | SOLUTION NMR | |
| 8VOH | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P11215-F1 | 86.30 | 0.51 |
Antibody-complex structures (SAbDab): 5 — 3Q3G, 3QA3, 7P2D, 7USL, 9GMU
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (11): 465; 467; 469; 473; 529; 531; 533; 537; 592; 596; 600
Disulfide bonds (10): 66–73, 105–123, 113–144, 494–505, 638–721, 654–711, 770–776, 847–864, 998–1022, 1027–1032
Glycosylation sites (19): 86, 240, 391, 469, 692, 696, 734, 801, 880, 900, 911, 940, 946, 978, 993, 1021, 1044, 1050, 1075
Function
Pathways and Gene Ontology
Reactome pathways
12 pathways
| ID | Pathway |
|---|---|
| R-HSA-166016 | Toll Like Receptor 4 (TLR4) Cascade |
| R-HSA-202733 | Cell surface interactions at the vascular wall |
| R-HSA-216083 | Integrin cell surface interactions |
| R-HSA-6785807 | Interleukin-4 and Interleukin-13 signaling |
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-109582 | Hemostasis |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-1474244 | Extracellular matrix organization |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-168898 | Toll-like Receptor Cascades |
| R-HSA-449147 | Signaling by Interleukins |
MSigDB gene sets: 474 (showing top):
GOBP_PHENOL_CONTAINING_COMPOUND_METABOLIC_PROCESS, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_ESTRADIOL, GOBP_RESPONSE_TO_AMINE, SWEET_KRAS_ONCOGENIC_SIGNATURE, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, MODULE_255, GOBP_INFLAMMATORY_RESPONSE, GOCC_SECRETORY_GRANULE, GOBP_POSITIVE_REGULATION_OF_LEUKOCYTE_DEGRANULATION, MODULE_45, MODULE_64, GOBP_REGULATION_OF_SUPEROXIDE_ANION_GENERATION, GOBP_PROTEIN_TARGETING
GO Biological Process (29): microglial cell activation (GO:0001774), response to amphetamine (GO:0001975), complement receptor mediated signaling pathway (GO:0002430), response to ischemia (GO:0002931), receptor-mediated endocytosis (GO:0006898), phagocytosis, engulfment (GO:0006911), cell adhesion (GO:0007155), cell-matrix adhesion (GO:0007160), integrin-mediated signaling pathway (GO:0007229), response to mechanical stimulus (GO:0009612), ectodermal cell differentiation (GO:0010668), forebrain development (GO:0030900), response to estradiol (GO:0032355), positive regulation of superoxide anion generation (GO:0032930), heterotypic cell-cell adhesion (GO:0034113), positive regulation of neutrophil degranulation (GO:0043315), innate immune response (GO:0045087), negative regulation of dopamine metabolic process (GO:0045963), positive regulation of protein targeting to membrane (GO:0090314), amyloid-beta clearance (GO:0097242), cell-cell adhesion (GO:0098609), obsolete cell-cell adhesion via plasma-membrane adhesion molecules (GO:0098742), response to Gram-positive bacterium (GO:0140459), complement-mediated synapse pruning (GO:0150062), vertebrate eye-specific patterning (GO:0150064), positive regulation of microglial cell mediated cytotoxicity (GO:1904151), response to curcumin (GO:1904643), immune system process (GO:0002376), positive regulation of metabolic process (GO:0009893)
GO Molecular Function (9): amyloid-beta binding (GO:0001540), complement component C3b binding (GO:0001851), integrin binding (GO:0005178), heat shock protein binding (GO:0031072), signaling receptor activity (GO:0038023), cargo receptor activity (GO:0038024), metal ion binding (GO:0046872), protein binding (GO:0005515), protein-containing complex binding (GO:0044877)
GO Cellular Component (12): obsolete extracellular space (GO:0005615), plasma membrane (GO:0005886), integrin complex (GO:0008305), external side of plasma membrane (GO:0009897), cell surface (GO:0009986), integrin alphaM-beta2 complex (GO:0034688), specific granule membrane (GO:0035579), plasma membrane raft (GO:0044853), extracellular exosome (GO:0070062), tertiary granule membrane (GO:0070821), membrane (GO:0016020), membrane raft (GO:0045121)
Reactome top-level categories
Rollup of top-7 pathways:
| Category | Pathways |
|---|---|
| Innate Immune System | 2 |
| Immune System | 2 |
| Toll-like Receptor Cascades | 1 |
| Hemostasis | 1 |
| Extracellular matrix organization | 1 |
| Signaling by Interleukins | 1 |
| Cytokine Signaling in Immune system | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| plasma membrane | 2 |
| cellular anatomical structure | 2 |
| secretory granule membrane | 2 |
| leukocyte activation involved in inflammatory response | 1 |
| macrophage activation | 1 |
| glial cell activation | 1 |
| response to amine | 1 |
| immune response-activating cell surface receptor signaling pathway | 1 |
| response to stress | 1 |
| endocytosis | 1 |
| phagocytosis | 1 |
| plasma membrane invagination | 1 |
| cellular process | 1 |
| cell-substrate adhesion | 1 |
| cell surface receptor signaling pathway | 1 |
| response to external stimulus | 1 |
| response to abiotic stimulus | 1 |
| ectoderm development | 1 |
| cell differentiation | 1 |
| brain development | 1 |
| anatomical structure development | 1 |
| response to lipid | 1 |
| response to oxygen-containing compound | 1 |
| regulation of superoxide anion generation | 1 |
| superoxide anion generation | 1 |
| positive regulation of reactive oxygen species metabolic process | 1 |
| cell-cell adhesion | 1 |
| positive regulation of myeloid leukocyte mediated immunity | 1 |
| positive regulation of leukocyte degranulation | 1 |
| neutrophil degranulation | 1 |
| regulation of neutrophil degranulation | 1 |
| positive regulation of immune response | 1 |
| immune response | 1 |
| defense response to symbiont | 1 |
| negative regulation of amine metabolic process | 1 |
| regulation of dopamine metabolic process | 1 |
| dopamine metabolic process | 1 |
| protein targeting to membrane | 1 |
| positive regulation of cellular process | 1 |
Protein interactions and networks
STRING
4626 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ITGAM | ITGB2 | P05107 | 999 |
| ITGAM | ICAM1 | P05362 | 996 |
| ITGAM | THY1 | P04216 | 987 |
| ITGAM | VCAM1 | P19320 | 986 |
| ITGAM | GP1BA | P07359 | 982 |
| ITGAM | ICAM2 | P13598 | 968 |
| ITGAM | CD209 | Q9NNX6 | 960 |
| ITGAM | PTPRC | P08575 | 955 |
| ITGAM | FCGR3B | O75015 | 947 |
| ITGAM | JAM3 | Q9BX67 | 940 |
| ITGAM | CD8A | P01732 | 932 |
| ITGAM | ITGAL | P20701 | 930 |
| ITGAM | CD4 | P01730 | 929 |
| ITGAM | SELP | P16109 | 926 |
| ITGAM | MRC1 | P22897 | 924 |
IntAct
124 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ITGAM | PTN | psi-mi:“MI:0407”(direct interaction) | 0.620 |
| ITGAM | TMX2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | HSD17B13 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | PIGP | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | TMEM14B | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | ABHD16A | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | KASH5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | psi-mi:“MI:0915”(physical association) | 0.560 | |
| ITGAM | CREB3L1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GPR42 | ITGAM | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | MRM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | REEP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | CD79A | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | KCNJ6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | KIR2DL3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | GJA8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | TMEM52B | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | ELOVL4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | CERS4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | SYT2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GJB1 | ITGAM | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | RUSF1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGAM | GORAB | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (66): SHARPIN (Protein-peptide), ITGAM (Co-fractionation), ITGAM (Two-hybrid), ITGAM (Affinity Capture-Western), ITGAM (Affinity Capture-MS), ITGAM (Two-hybrid), ITGAM (Two-hybrid), ITGAM (Two-hybrid), ITGAM (Two-hybrid), ITGAM (Two-hybrid), ITGAM (Two-hybrid), ITGAM (Two-hybrid), ITGAM (Two-hybrid), ITGAM (Two-hybrid), ITGAM (Two-hybrid)
ESM2 similar proteins: A2ARA8, B0S5N4, B8JK39, F1MMS9, O08665, P05555, P06756, P08514, P08648, P11215, P11688, P13612, P17301, P17852, P18564, P20701, P23229, P24063, P26006, P26007, P26008, P26009, P38570, P43406, P53708, P53710, P53711, P61622, P61625, P80746, Q00651, Q06274, Q13683, Q13797, Q60677, Q61738, Q61739, Q62469, Q62470, Q63258
Diamond homologs: A2AX52, A6H584, A6NMZ7, A6QLN9, A8TX70, E7FF10, O00339, O08746, O42401, O75578, O89029, P05099, P05555, P11215, P12111, P15989, P20701, P20702, P34576, P51942, P61625, Q02388, Q13349, Q21281, Q21540, Q28902, Q3V0T4, Q63870, Q642A6, Q6PCB0, Q6UXI7, Q8C6K9, Q8NFW1, Q8R2Z5, Q90615, Q91145, Q923P0, Q95LI2, Q96P44, Q9P218
SIGNOR signaling
6 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ITGAM | up-regulates | ICAM1 | binding |
| SPI1 | “up-regulates quantity by expression” | ITGAM | “transcriptional regulation” |
| ITGAM | up-regulates | Differentiation | |
| ITGAM | “form complex” | “AM/b2 integrin” | binding |
| C5AR2 | “up-regulates quantity by expression” | ITGAM | |
| C5AR1 | “up-regulates quantity by expression” | ITGAM |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1126 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 633 |
| Likely benign | 434 |
| Benign | 30 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
4194 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:31265391:ACAG:A | acceptor_gain | 1.0000 |
| 16:31265393:AG:A | acceptor_gain | 1.0000 |
| 16:31265393:AGGGT:A | acceptor_gain | 1.0000 |
| 16:31265394:GG:G | acceptor_gain | 1.0000 |
| 16:31265394:GGGTG:G | acceptor_gain | 1.0000 |
| 16:31265494:GCAGG:G | donor_gain | 1.0000 |
| 16:31265495:CAGGG:C | donor_loss | 1.0000 |
| 16:31265496:AGGG:A | donor_loss | 1.0000 |
| 16:31265497:GG:G | donor_gain | 1.0000 |
| 16:31265497:GGGTG:G | donor_loss | 1.0000 |
| 16:31265498:GG:G | donor_gain | 1.0000 |
| 16:31265499:G:GG | donor_gain | 1.0000 |
| 16:31265809:A:AG | acceptor_gain | 1.0000 |
| 16:31265810:G:GA | acceptor_gain | 1.0000 |
| 16:31270949:CCCA:C | acceptor_loss | 1.0000 |
| 16:31270951:CAG:C | acceptor_loss | 1.0000 |
| 16:31270952:A:AG | acceptor_gain | 1.0000 |
| 16:31270952:A:AT | acceptor_loss | 1.0000 |
| 16:31270952:AG:A | acceptor_gain | 1.0000 |
| 16:31270953:G:GA | acceptor_loss | 1.0000 |
| 16:31270953:G:GG | acceptor_gain | 1.0000 |
| 16:31270953:GG:G | acceptor_gain | 1.0000 |
| 16:31270953:GGGT:G | acceptor_gain | 1.0000 |
| 16:31271096:GGG:G | donor_gain | 1.0000 |
| 16:31271097:GGG:G | donor_gain | 1.0000 |
| 16:31271988:GTGGT:G | donor_gain | 1.0000 |
| 16:31273351:T:A | acceptor_gain | 1.0000 |
| 16:31273358:T:A | acceptor_gain | 1.0000 |
| 16:31273360:CACA:C | acceptor_loss | 1.0000 |
| 16:31273361:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
7553 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:31330531:A:C | S1068R | 0.996 |
| 16:31330533:C:A | S1068R | 0.996 |
| 16:31330533:C:G | S1068R | 0.996 |
| 16:31271040:T:C | F172L | 0.992 |
| 16:31271042:T:A | F172L | 0.992 |
| 16:31271042:T:G | F172L | 0.992 |
| 16:31270994:T:A | D156E | 0.990 |
| 16:31270994:T:G | D156E | 0.990 |
| 16:31270993:A:T | D156V | 0.989 |
| 16:31270999:C:T | S158F | 0.989 |
| 16:31273434:T:A | D258E | 0.989 |
| 16:31273434:T:G | D258E | 0.989 |
| 16:31331222:A:C | S1112R | 0.989 |
| 16:31331224:C:A | S1112R | 0.989 |
| 16:31331224:C:G | S1112R | 0.989 |
| 16:31271004:A:C | S160R | 0.988 |
| 16:31271006:C:A | S160R | 0.988 |
| 16:31271006:C:G | S160R | 0.988 |
| 16:31273433:A:T | D258V | 0.988 |
| 16:31275642:T:C | F318L | 0.988 |
| 16:31275644:T:A | F318L | 0.988 |
| 16:31275644:T:G | F318L | 0.988 |
| 16:31270984:T:C | F153S | 0.987 |
| 16:31270998:T:C | S158P | 0.987 |
| 16:31271865:T:C | S193P | 0.987 |
| 16:31275643:T:G | F318C | 0.986 |
| 16:31261763:T:C | F34L | 0.985 |
| 16:31261765:C:A | F34L | 0.985 |
| 16:31261765:C:G | F34L | 0.985 |
| 16:31275601:C:A | A304E | 0.985 |
dbSNP variants (sampled 300 via entrez): RS1000068561 (16:31284488 C>T), RS1000069240 (16:31261515 T>G), RS1000120561 (16:31305458 G>A), RS1000131278 (16:31312027 TCGCAAGGACAAAAAACCA>T), RS1000146715 (16:31267197 T>C), RS1000167555 (16:31273851 T>A), RS1000186565 (16:31323600 T>C), RS1000187394 (16:31280319 A>C,G), RS1000211536 (16:31286298 G>A), RS1000215114 (16:31323470 G>C), RS1000261333 (16:31307348 C>G), RS1000278079 (16:31329767 C>T), RS1000315956 (16:31285641 A>T), RS1000325698 (16:31285964 G>A,T), RS1000394651 (16:31329484 C>A,T)
Disease associations
OMIM: gene MIM:120980 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| systemic lupus erythematosus | Supportive | Unknown |
Mondo (1): systemic lupus erythematosus (MONDO:0007915)
Orphanet (0):
HPO phenotypes
44 total (30 of 44 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000093 | Proteinuria |
| HP:0000155 | Oral ulcer |
| HP:0000488 | Retinopathy |
| HP:0000716 | Depression |
| HP:0000790 | Hematuria |
| HP:0000822 | Hypertension |
| HP:0000992 | Cutaneous photosensitivity |
| HP:0001250 | Seizure |
| HP:0001369 | Arthritis |
| HP:0001596 | Alopecia |
| HP:0001824 | Weight loss |
| HP:0001873 | Thrombocytopenia |
| HP:0001878 | Hemolytic anemia |
| HP:0001882 | Decreased total leukocyte count |
| HP:0001945 | Fever |
| HP:0002039 | Anorexia |
| HP:0002072 | Chorea |
| HP:0002716 | Lymphadenopathy |
| HP:0003453 | Antineutrophil antibody positivity |
| HP:0003493 | Antinuclear antibody positivity |
| HP:0005421 | Decreased circulating complement C3 concentration |
| HP:0005764 | Polyarticular arthritis |
| HP:0007417 | Discoid lupus rash |
| HP:0012085 | Pyuria |
| HP:0012378 | Fatigue |
| HP:0020151 | Anti-dsDNA antibody positivity |
| HP:0025300 | Malar rash |
| HP:0030880 | Raynaud phenomenon |
| HP:0032235 | Anti-La/SS-B antibody positivity |
| HP:0033028 | Anti-U1 ribonucleoprotein antibody positivity |
GWAS associations
24 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000142_4 | Systemic lupus erythematosus | 2.000000e-23 |
| GCST000144_6 | Systemic lupus erythematosus | 3.000000e-11 |
| GCST000216_5 | Systemic lupus erythematosus | 2.000000e-06 |
| GCST000996_16 | Systemic lupus erythematosus | 1.000000e-15 |
| GCST001795_34 | Systemic lupus erythematosus | 7.000000e-06 |
| GCST002069_18 | Systemic lupus erythematosus and Systemic sclerosis | 1.000000e-10 |
| GCST002463_22 | Systemic lupus erythematosus | 4.000000e-11 |
| GCST002655_1 | IgA nephropathy | 1.000000e-08 |
| GCST002655_10 | IgA nephropathy | 8.000000e-13 |
| GCST002655_9 | IgA nephropathy | 1.000000e-11 |
| GCST003155_20 | Systemic lupus erythematosus | 3.000000e-76 |
| GCST003156_18 | Systemic lupus erythematosus | 4.000000e-53 |
| GCST003252_5 | Systemic lupus erythematosus | 3.000000e-21 |
| GCST003622_41 | Systemic lupus erythematosus | 5.000000e-48 |
| GCST004867_36 | Systemic lupus erythematosus | 2.000000e-20 |
| GCST005524_8 | Autoimmune thyroid diseases (Graves disease or Hashimoto’s thyroiditis) | 5.000000e-08 |
| GCST005526_8 | Graves’ disease | 4.000000e-08 |
| GCST005752_124 | Systemic lupus erythematosus | 9.000000e-85 |
| GCST005752_20 | Systemic lupus erythematosus | 7.000000e-22 |
| GCST005752_24 | Systemic lupus erythematosus | 2.000000e-13 |
| GCST007400_40 | Systemic lupus erythematosus | 3.000000e-62 |
| GCST009240_34 | Serum metabolite levels (CMS) | 6.000000e-11 |
| GCST010241_223 | Apolipoprotein A1 levels | 2.000000e-09 |
| GCST011426_34 | Systemic lupus erythematosus | 6.000000e-08 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004614 | apolipoprotein A 1 measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008180 | Lupus Erythematosus, Systemic | C17.300.480; C20.111.590 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (3): CHEMBL2111362 (PROTEIN COMPLEX), CHEMBL3826 (SINGLE PROTEIN), CHEMBL4106121 (PROTEIN-PROTEIN INTERACTION)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — Integrins
ChEMBL bioactivities
9 potent at pChembl≥5 of 20 total, top 9 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.33 | IC50 | 47.2 | nM | CHEMBL5417237 |
| 7.27 | IC50 | 53.4 | nM | CHEMBL5417237 |
| 6.85 | IC50 | 140 | nM | CHEMBL4243248 |
| 6.61 | IC50 | 244 | nM | CHEMBL5419935 |
| 6.48 | IC50 | 330 | nM | CHEMBL81782 |
| 6.45 | IC50 | 353 | nM | CHEMBL5419935 |
| 5.60 | IC50 | 2500 | nM | CHEMBL81782 |
| 5.60 | IC50 | 2500 | nM | CHEMBL4243248 |
| 5.19 | IC50 | 6500 | nM | CHEMBL5271349 |
PubChem BioAssay actives
9 with measured affinity, of 57 total; 5 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2S,5S,8S,11S,14S)-8-methyl-2-[[4-[(2-methylphenyl)carbamoylamino]phenyl]methyl]-5-(2-methylpropyl)-3,6,9,12,16-pentaoxo-11-propan-2-yl-1,4,7,10,13-pentazacyclohexadecane-14-carboxylic acid | 2029965: Binding affinity to alphaMbeta2 integrin receptor (unknown origin) preincubated for 30 mins followed by 30 mins incubation in fibrinogen coated wells by fluorescence based assay | ic50 | 0.0472 | uM |
| 2-[(1E,3E)-4-(3,4-dihydro-2H-quinolin-1-yl)buta-1,3-dienyl]-1-ethylbenzo[e][1,3]benzothiazol-1-ium chloride | 1393264: Inhibition of C3bi-AP binding to CR3 derived from human PMN | ic50 | 0.1400 | uM |
| (2R,5S,8S,11S,14R)-8-(carboxymethyl)-2-[[4-[(2-methylphenyl)carbamoylamino]phenyl]methyl]-5-(2-methylpropyl)-3,6,9,12,16-pentaoxo-11-propan-2-yl-1,4,7,10,13-pentazacyclohexadecane-14-carboxylic acid | 2029965: Binding affinity to alphaMbeta2 integrin receptor (unknown origin) preincubated for 30 mins followed by 30 mins incubation in fibrinogen coated wells by fluorescence based assay | ic50 | 0.2440 | uM |
| (2E)-3-ethyl-2-[(Z)-3-(3-ethyl-1,3-benzothiazol-3-ium-2-yl)prop-2-enylidene]-1,3-benzothiazole iodide | 1393264: Inhibition of C3bi-AP binding to CR3 derived from human PMN | ic50 | 0.3300 | uM |
| (3S)-3-[[2-[[(2S)-2-[[(1R,3R,4aS,4bS,6aS,8S,10aS,10bS,12aS)-8-methoxy-10a,12a-dimethylspiro[3,4,4a,4b,5,6,6a,7,8,9,10,10b,11,12-tetradecahydronaphtho[2,1-f]isochromene-1,2’-oxolane]-3-carbonyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]acetyl]amino]-4-amino-4-oxobutanoic acid | 1927075: Antagonist activity at integrin CD11B/CD18 (unknown origin) | ic50 | 6.5000 | uM |
CTD chemical–gene interactions
160 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tretinoin | decreases reaction, increases expression, increases localization, affects expression, increases response to substance (+5 more) | 39 |
| Tetradecanoylphorbol Acetate | decreases reaction, increases expression, increases localization, affects cotreatment | 12 |
| Calcitriol | affects cotreatment, increases expression, increases reaction, affects binding, decreases reaction | 11 |
| Arsenic Trioxide | decreases expression, decreases reaction, increases expression, increases reaction, affects cotreatment | 9 |
| 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one | decreases reaction, increases expression, increases reaction, affects cotreatment, decreases expression | 5 |
| Dimethyl Sulfoxide | affects cotreatment, decreases reaction, increases expression, increases reaction | 5 |
| N-Formylmethionine Leucyl-Phenylalanine | decreases reaction, increases expression, increases reaction | 5 |
| tamibarotene | decreases reaction, increases expression, affects expression, increases reaction | 4 |
| 3-methyladenine | affects localization, increases localization, affects cotreatment, decreases reaction, increases expression | 3 |
| 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one | decreases reaction, increases expression | 3 |
| U 0126 | affects cotreatment, decreases reaction, increases expression | 3 |
| lithocholic acid acetate | affects cotreatment, increases expression | 3 |
| Calcimycin | affects cotreatment, increases expression, decreases reaction | 3 |
| Decitabine | affects expression, increases expression, increases reaction | 3 |
| Lipopolysaccharides | increases expression | 3 |
| sodium arsenite | increases expression | 2 |
| arsenic disulfide | decreases reaction, increases expression, increases reaction | 2 |
| 4-(4-fluorophenyl)-2-(4-hydroxyphenyl)-5-(4-pyridyl)imidazole | decreases reaction, increases expression, increases reaction | 2 |
| 4-amino-2-trifluoromethyl-phenyl retinate | decreases reaction, increases expression, affects expression, increases reaction | 2 |
| Cadmium | affects cotreatment, increases expression, decreases reaction, decreases expression, increases abundance | 2 |
| Dexamethasone | decreases reaction, increases expression, increases reaction | 2 |
| Heparin | decreases expression, increases expression | 2 |
| Platelet Activating Factor | decreases reaction, increases expression, increases reaction | 2 |
| Vitamin D | increases expression, increases reaction | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| Sirolimus | affects cotreatment, decreases reaction, increases expression, increases localization, increases reaction | 2 |
| aristolochic acid I | increases expression | 1 |
| SHP099 | increases expression, increases reaction | 1 |
| 4-(2-aminoethyl)benzenesulfonylfluoride | decreases reaction, increases localization | 1 |
| parthenolide | increases expression, increases reaction | 1 |
ChEMBL screening assays
14 unique, capped per target: 12 binding, 2 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1037931 | Functional | Agonist activity at CD11b/CD18 expressed in K562 cells assessed as increase in cell adhesion to fibrinogen | Identification of novel agonists of the integrin CD11b/CD18. — Bioorg Med Chem Lett |
| CHEMBL1249611 | Binding | Binding affinity to alphaMbeta2 integrin expressed in CHO cells by flow cytometry | Combinatorial chemistry identifies high-affinity peptidomimetics against alpha4beta1 integrin for in vivo tumor imaging. — Nat Chem Biol |
Cellosaurus cell lines
7 cell lines: 6 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B8IT | Abcam HCT 116 ITGAM KO | Cancer cell line | Male |
| CVCL_B8XN | Abcam MCF-7 ITGAM KO | Cancer cell line | Female |
| CVCL_B9L3 | Abcam A-549 ITGAM KO | Cancer cell line | Male |
| CVCL_D7SP | Ubigene A-549 ITGAM KO | Cancer cell line | Male |
| CVCL_D8EJ | Ubigene BEAS-2B ITGAM KO | Transformed cell line | Male |
| CVCL_E4AH | K-562 KC/16 | Cancer cell line | Female |
| CVCL_F1U5 | HyCyte THP-1 KO-hITGAM | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00120887 | PHASE4 | COMPLETED | Lupus Atherosclerosis Prevention Study |
| NCT00125307 | PHASE4 | COMPLETED | Tacrolimus for the Treatment of Systemic Lupus Erythematosus With Membranous Nephritis |
| NCT00188188 | PHASE4 | UNKNOWN | Study of Endothelial Dysfunction in Systemic Lupus and Its Role in Heart Disease |
| NCT00371501 | PHASE4 | COMPLETED | Aspirin and Statins for Prevention of Atherosclerosis and Arterial Thromboembolism in Systemic Lupus Erythematosus |
| NCT00392093 | PHASE4 | COMPLETED | Effect of Hormone Replacement Therapy on Lupus Activity |
| NCT00413361 | PHASE4 | COMPLETED | The Reduction of Systemic Lupus Erythematosus Flares :Study PLUS |
| NCT00508898 | PHASE4 | WITHDRAWN | The Efficacy and Safety of Calcitriol for the Treatment of Lupus Nephritis and Persistent Proteinuria |
| NCT00668330 | PHASE4 | COMPLETED | Steroid Induced Osteoporosis in Patients With Systemic Lupus Erythematosus |
| NCT00739050 | PHASE4 | TERMINATED | Effect of Simvastatin on Endothelial Function in Premenopausal Women With Systemic Lupus Erythematosus (0733-271)(TERMINATED) |
| NCT00815282 | PHASE4 | COMPLETED | Immune Response After Human Papillomavirus Vaccination in Patients With Autoimmune Disease |
| NCT00828178 | PHASE4 | COMPLETED | Efficacy of Fish Oil in Lupus Patients |
| NCT00866229 | PHASE4 | UNKNOWN | Efficacy and Adverse Effect of Simvastatin Compare to Rosuvastatin in Systemic Lupus Erythematosus (SLE) Patients With Corticosteroid Therapy and High Low-Density Lipoprotein (LDL) Cholesterol Level |
| NCT00911521 | PHASE4 | COMPLETED | Immunogenicity and Safety of a Quadrivalent Human Papillomavirus (HPV) Vaccine in Patients With SLE: a Controlled Study |
| NCT01101802 | PHASE4 | COMPLETED | Mycophenolate Mofetil in Systemic Lupus Erythematosus (MISSILE) |
| NCT01112215 | PHASE4 | COMPLETED | Enteric-coated Mycophenolate Sodium Versus Azathioprine for the Extra-renal Lupus Manifestations |
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Related Atlas pages
- Associated diseases: systemic lupus erythematosus
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Graves disease, Hashimoto thyroiditis, IgA glomerulonephritis, systemic lupus erythematosus