ITGB8

gene
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Summary

ITGB8 (integrin subunit beta 8, HGNC:6163) is a protein-coding gene on chromosome 7p21.1, encoding Integrin beta-8 (P26012). Integrin alpha-V:beta-8 (ITGAV:ITGB8) is a receptor for fibronectin.

This gene is a member of the integrin beta chain family and encodes a single-pass type I membrane protein with a VWFA domain and four cysteine-rich repeats. This protein noncovalently binds to an alpha subunit to form a heterodimeric integrin complex. In general, integrin complexes mediate cell-cell and cell-extracellular matrix interactions and this complex plays a role in human airway epithelial proliferation. Alternatively spliced variants which encode different protein isoforms have been described; however, not all variants have been fully characterized.

Source: NCBI Gene 3696 — RefSeq curated summary.

At a glance

  • GWAS associations: 70
  • Clinical variants (ClinVar): 132 total — 2 pathogenic
  • Druggable target: yes — 4 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_002214

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:6163
Approved symbolITGB8
Nameintegrin subunit beta 8
Location7p21.1
Locus typegene with protein product
StatusApproved
Ensembl geneENSG00000105855
Ensembl biotypeprotein_coding
OMIM604160
Entrez3696

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 8 protein_coding, 2 retained_intron, 1 protein_coding_CDS_not_defined

ENST00000222573, ENST00000460204, ENST00000477859, ENST00000478974, ENST00000537992, ENST00000897604, ENST00000897605, ENST00000897606, ENST00000897607, ENST00000897608, ENST00000897609

RefSeq mRNA: 1 — MANE Select: NM_002214 NM_002214

CCDS: CCDS5370

Canonical transcript exons

ENST00000222573 — 14 exons

ExonStartEnd
ENSE000006726612039886020398994
ENSE000006726632040172120402126
ENSE000006726652040462820404853
ENSE000006726672040606220406171
ENSE000006726692040961520409778
ENSE000008318992040987520415754
ENSE000018754112033090020331933
ENSE000034709022036701220367186
ENSE000035137432039489620394985
ENSE000035909402036363720363722
ENSE000035988362039140320391498
ENSE000036177972037905120379297
ENSE000036715882038172720381885
ENSE000036879622038066620380831

Expression profiles

Bgee: expression breadth ubiquitous, 262 present calls, max score 99.74.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 19.1679 / max 723.5212, expressed in 1442 samples.

FANTOM5 promoters (23 alternative TSS)

Promoter IDTPM avgSamples expressed
774665.85541188
774693.3847842
774681.8115743
774721.1133481
774801.0253457
774811.0220358
774830.9704226
774770.3827150
774780.3822170
774760.3678165

Top tissues by expression

293 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
pigmented layer of retinaUBERON:000178299.74gold quality
retinaUBERON:000096699.71gold quality
lateral globus pallidusUBERON:000247698.68gold quality
ventricular zoneUBERON:000305398.49gold quality
synovial jointUBERON:000221798.23gold quality
dorsal root ganglionUBERON:000004497.70gold quality
bronchial epithelial cellCL:000232897.67gold quality
corpus epididymisUBERON:000435997.62gold quality
mucosa of paranasal sinusUBERON:000503097.59gold quality
trigeminal ganglionUBERON:000167597.56gold quality
caput epididymisUBERON:000435897.48gold quality
seminal vesicleUBERON:000099897.08gold quality
substantia nigra pars reticulataUBERON:000196696.94gold quality
oral cavityUBERON:000016796.90gold quality
subthalamic nucleusUBERON:000190696.84gold quality
inferior vagus X ganglionUBERON:000536396.67gold quality
sural nerveUBERON:001548896.59gold quality
upper leg skinUBERON:000426296.54gold quality
substantia nigra pars compactaUBERON:000196596.37gold quality
globus pallidusUBERON:000187596.12gold quality
superior vestibular nucleusUBERON:000722795.61gold quality
tibial nerveUBERON:000132395.57gold quality
medial globus pallidusUBERON:000247795.51gold quality
cauda epididymisUBERON:000436095.49gold quality
epithelium of nasopharynxUBERON:000195195.13gold quality
skin of hipUBERON:000155494.82gold quality
germinal epithelium of ovaryUBERON:000130494.75gold quality
corpus callosumUBERON:000233694.75gold quality
renal medullaUBERON:000036294.74gold quality
endometriumUBERON:000129594.35gold quality

Single-cell (SCXA)

Detected in 12 experiment(s), a significant marker in 11.

ExperimentMarker?Max mean expression
E-GEOD-131882yes2328.33
E-CURD-119yes1815.36
E-GEOD-84465yes1753.66
E-GEOD-75688yes1501.34
E-GEOD-98556yes1193.80
E-MTAB-8559yes902.62
E-GEOD-135922yes16.89
E-GEOD-93593yes12.84
E-MTAB-7249yes11.38
E-MTAB-6678yes4.19
E-MTAB-7303no177.08
E-ANND-3no0.00

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

9 targets.

TargetRegulation
ITGA11Repression
ITGA3Repression
ITGA4Repression
ITGA5Activation
ITGA6Repression
ITGA7Repression
ITGAVRepression
ITGB1Repression
ITGB5Repression

Upstream regulators (CollecTRI, top): ATF2, JUN

miRNA regulators (miRDB)

342 targeting ITGB8, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3163100.0077.238605
HSA-MIR-5692A100.0074.406850
HSA-MIR-3646100.0073.565283
HSA-MIR-656-3P100.0072.152788
HSA-MIR-1277-5P100.0073.955056
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-4262100.0073.263931
HSA-MIR-340-5P100.0072.504437
HSA-MIR-5011-5P100.0083.465820
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-4776-3P100.0068.731340
HSA-MIR-126-5P100.0072.713180
HSA-MIR-6833-3P100.0070.633197
HSA-MIR-4768-5P100.0069.492861
HSA-MIR-6873-3P100.0071.422626
HSA-MIR-428299.9975.366408
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-548AW99.9972.573559
HSA-MIR-371B-5P99.9975.344759
HSA-MIR-181A-5P99.9972.962995
HSA-MIR-181B-5P99.9972.972996
HSA-MIR-181C-5P99.9972.952996
HSA-MIR-181D-5P99.9973.042997
HSA-MIR-450099.9972.722367
HSA-MIR-366299.9973.825684
HSA-MIR-19A-3P99.9875.332762
HSA-MIR-19B-3P99.9875.442754
HSA-MIR-477599.9875.006394
HSA-MIR-569699.9872.364487
HSA-MIR-520D-5P99.9873.344883

Literature-anchored findings (GeneRIF, showing 40)

  • induced alpha(v)beta(8) integrin expression mediated Fas-stimulated migration (PMID:12324452)
  • These data provide evidence for a functional role for integrin alphavbeta8-mediated activation of transforming growth factor-beta in control of human airway epithelial proliferation in vivo. (PMID:12875973)
  • periostin has an active role in the epithelial-mesenchymal transformation and metastasis that requires cross-talk between integrin and EGFR signaling pathways (PMID:16702213)
  • Fusion of epithelial cells by Epstein-Barr virus proteins is triggered by binding of viral glycoproteins gHgL to integrins alphavbeta6 or alphavbeta8. (PMID:19920174)
  • Reduced expression of integrin beta8 may be involved in the pathogenesis of sporadic brain arteriovenous malformations. (PMID:20019187)
  • Transcription of the transforming growth factor beta activating integrin beta8 subunit is regulated by SP3, AP-1, and the p38 pathway (PMID:20519498)
  • The mRNA levels of IntegrinalphaV and Integrinbeta8 were significantly higher in LSCC tissues than that in corresponding adjacent normal tissues. (PMID:20942236)
  • miR-93 promotes the growth of, and angiogenesis in astrocytomas, by suppressing, at least in part, integrin-beta8 expression. (PMID:20956944)
  • The authors demonstrated that both integrins alphavbeta6 and alphavbeta8 can serve as specific receptors for Epstein-Barr virus gHgL proteins. (PMID:21178476)
  • Data suggest that lung fibroblast chemokine secretion directs dendritic cell trafficking, in a manner that is critically dependent on alphavbeta8-mediated activation of TGF-beta by fibroblasts. (PMID:21646718)
  • Highly angiogenic and poorly invasive glioblastomas expressed low levels of beta8 integrin, whereas highly invasive glioblastomas with limited neovascularization expressed high levels of beta8 integrin. (PMID:21859829)
  • Interleukin-1beta induces increased transcriptional activation of the transforming growth factor-beta-activating integrin subunit beta8 through altering chromatin architecture. (PMID:21878622)
  • Deletion of the Itgb8 gene from retinal ganglia cells and Mu ller glia, but not astrocytes, results in highly abnormal vascular patterning and instability. (PMID:22279205)
  • ITGB8 silencing may change lung cancer cells to a less invasive phenotype through alteration in the expression of metastasis-related genes. (PMID:22753015)
  • alphavbeta8 integrin, via interactions with RhoGDI1, regulates activation of Rho proteins to promote glioblastoma multiforme cell invasiveness. (PMID:23283986)
  • Desmoglein-2 co-localizes with integrin-beta8 in N-MVECs. (PMID:23874518)
  • Brain metastases ITGB8 expression exhibits considerable heterogeneity according to tumor origin. (PMID:24294359)
  • alphavbeta6- and alphavbeta8-integrins acted independently and are thus interchangeable as receptors for Herpes simplex type 1 virus entry. (PMID:24367260)
  • data show that integrin beta 8, but not integrin beta 5 or integrin beta 6, protein expression is increased in liver specimens of patients with biliary atresia (PMID:25079481)
  • overexpression of integrin alphav induces integrin alphavb8 heterodimer formation and the binding of integrin alphavbeta8 to type collagen might enhance the proliferation and invasion of SCC cells via the activation of the MEK/ERK signaling pathway. (PMID:25190218)
  • Integrin Beta8 plays a role in the motility of prostate cancer cells. (PMID:25886373)
  • Herpes simplex virus entry is enabled by gH/gL interaction with alphavbeta6- or alphavbeta8-integrin receptors. (PMID:26157134)
  • Integrins alphavbeta6 and alphavbeta8 were expressed in non-overlapping patterns by keratinocytes and maintained the epidermal residence of Langerhans cells and tissue resident memory T cells by activating latent TGF-beta. (PMID:26901152)
  • Integrin beta8 was differentially expressed between Fibromyalgia patients and healthy controls. (PMID:27157394)
  • Among Greek and Polish patients with intracerebral hemorrhage, heterozygous individuals with the rs10251386 and the rs10239099 of the ITGB8 gene had significantly lower age of ICH onset compared to the wild-type genotypes. (PMID:27476161)
  • this study uncovers a novel pathway by which the TGFbeta-activating integrin alphavbeta8 is expressed in the human intestine on dendritic cell subsets, which is upregulated in patients with inflammatory bowel disease (PMID:27782111)
  • Although Mn(2+) potently activates other integrins and increases affinity of alphaVbeta6 for pro-TGF-beta1 25- to 55-fold, it increases alphaVbeta8 affinity only 2- to 3-fold. (PMID:28484027)
  • In cellular model, the microRNA-513a-3p was identified as a novel element targeting ITG-beta8, thereby controlling the protein level and its molecular function in the controlling of migration and pro-inflammatory environment. (PMID:29204818)
  • The results demonstrated that the hsa_circ_0046701/miR-142-3p/ITGB8 axis might play critical regulatory roles in the pathogenesis and development of glioma. (PMID:29337055)
  • our results indicate that miR-199a-3p enhances cisplatinsensitivity of ovarian cancer cells through downregulating ITGB8 expression, and miR-199a-3p may serve as a therapeutic target for the treatment of ovarian cancer patients with cisplatin-resistance. (PMID:29436681)
  • ITGB8 is identified as a novel target of miR-26a-5p. (PMID:29746867)
  • findings with the alphavbeta3 integrin suggests that our model of stabilizing the extended-closed conformation is generalizable to other integrins. (PMID:30061598)
  • Data uncovered that ITGB8 was a target gene of miR-106b. ITGB8 mRNA and protein levels decreased in colon cancer cells overexpressing miR-106b. (PMID:30520100)
  • ITGB8 was significantly upregulated in ovarian cancer tissues compared to that in normal ovary tissues. High-grade Serous Ovarian Carcinoma patients with high ITGB8 expression had significantly shorter overall survival and recurrence-free survival compared to their low-expression counterparts. Increased ITGB8 expression might be an independent prognostic indicator of unfavorable overall survival (PMID:30531684)
  • ITGB8 gene SNPs may be implicated in the risk of hemorrhagic event after a traumatic brain injury. (PMID:31033358)
  • Lack of a binding site for one of three betaI domain divalent cations and a unique beta6-alpha7 loop conformation in beta8 facilitate movements of the alpha1 and alpha1’ helices at the ligand binding pocket toward the high affinity state. (PMID:31792290)
  • Circular RNA TTBK2 regulates cell proliferation, invasion and ferroptosis via miR-761/ITGB8 axis in glioma. (PMID:32196629)
  • The long non-coding RNA PVT1/miR-145-5p/ITGB8 axis regulates cell proliferation, apoptosis, migration and invasion in non-small cell lung cancer cells. (PMID:32202906)
  • lncRNA ITGB8-AS1 functions as a ceRNA to promote colorectal cancer growth and migration through integrin-mediated focal adhesion signaling. (PMID:34371180)
  • Integrin subunit beta 8 contributes to lenvatinib resistance in HCC. (PMID:35238496)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_rerioitgb8ENSDARG00000028222
mus_musculusItgb8ENSMUSG00000025321
rattus_norvegicusItgb8ENSRNOG00000006569

Paralogs (8): ITGB5 (ENSG00000082781), ITGB6 (ENSG00000115221), ITGB4 (ENSG00000132470), ITGB7 (ENSG00000139626), ITGB1 (ENSG00000150093), ITGB2 (ENSG00000160255), ITGBL1 (ENSG00000198542), ITGB3 (ENSG00000259207)

Protein

Protein identifiers

Integrin beta-8P26012 (reviewed: P26012)

All UniProt accessions (1): P26012

UniProt curated annotations — full annotation on UniProt →

Function. Integrin alpha-V:beta-8 (ITGAV:ITGB8) is a receptor for fibronectin. It recognizes the sequence R-G-D in its ligands. Integrin alpha-V:beta-6 (ITGAV:ITGB6) mediates R-G-D-dependent release of transforming growth factor beta-1 (TGF-beta-1) from regulatory Latency-associated peptide (LAP), thereby playing a key role in TGF-beta-1 activation on the surface of activated regulatory T-cells (Tregs). Required during vasculogenesis.

Subunit / interactions. Heterodimer of an alpha and a beta subunit. Beta-8 (ITGB8) associates with alpha-V (ITGAV) to form ITGAV:ITGB8. ITGAV:ITGB8 interacts with TGFB1.

Subcellular location. Cell membrane.

Tissue specificity. Placenta, kidney, brain, ovary, uterus and in several transformed cells. Transiently expressed in 293 human embryonic kidney cells.

Domain organisation. The VWFA domain (or beta I domain) contains two cation-binding sites: the ligand-associated metal ion-binding site (LIMBS or SyMBS) and the metal ion-dependent adhesion site (MIDAS). Unlike in the other beta integrins, the cation-binding site adjacent MIDAS site (ADMIDAS) in ITGB8 is not functional due to the presence of two Asn residues instead of 2 Asp residues. This domain is also part of the ligand-binding site.

Similarity. Belongs to the integrin beta chain family.

Isoforms (2)

UniProt IDNamesCanonical?
P26012-11yes
P26012-22

RefSeq proteins (1): NP_002205* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000742EGFDomain
IPR002369Integrin_bsu_VWADomain
IPR015812Integrin_bsuFamily
IPR016201PSIDomain
IPR032695Integrin_dom_sfHomologous_superfamily
IPR033760Integrin_beta_NDomain
IPR036465vWFA_dom_sfHomologous_superfamily
IPR057073EGF_integrin_2Domain
IPR057243Integrin_I-EGF_CSConserved_site

Pfam: PF00362, PF17205, PF23105, PF23106

UniProt features (91 total): disulfide bond 25, strand 22, helix 13, binding site 8, glycosylation site 7, domain 6, turn 3, topological domain 2, signal peptide 1, chain 1, transmembrane region 1, splice variant 1, sequence variant 1

Structure

Experimental structures (PDB)

11 structures.

PDBMethodResolution (Å)
6OM1X-RAY DIFFRACTION2.66
8VS6ELECTRON MICROSCOPY2.73
6OM2X-RAY DIFFRACTION2.77
9INDELECTRON MICROSCOPY2.88
8TCFELECTRON MICROSCOPY2.9
8VSDELECTRON MICROSCOPY3.2
7Y1TELECTRON MICROSCOPY3.24
6UJAELECTRON MICROSCOPY3.3
6UJBELECTRON MICROSCOPY3.51
6UJCELECTRON MICROSCOPY3.56
6DJPELECTRON MICROSCOPY4.8

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P26012-F176.570.34

Antibody-complex structures (SAbDab): 46DJP, 6UJB, 6UJC, 9IND

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (8): 154 (in midas binding site); 156 (in midas binding site); 193 (in limbs binding site); 249 (in limbs binding site); 251 (in limbs binding site); 253 (in limbs binding site); 254 (in limbs binding site); 254 (in midas binding site)

Disulfide bonds (25): 47–65, 55–469, 58–83, 68–94, 211–218, 266–307, 407–419, 439–467, 471–494, 471–491, 481–494, 499–528, 511–526, 520–531, 533–546, 553–567, 561–572, 574–583, 585–609, 593–607 …

Glycosylation sites (7): 233, 402, 421, 431, 456, 466, 648

Function

Pathways and Gene Ontology

Reactome pathways

8 pathways

IDPathway
R-HSA-2129379Molecules associated with elastic fibres
R-HSA-216083Integrin cell surface interactions
R-HSA-2173789TGF-beta receptor signaling activates SMADs
R-HSA-1474244Extracellular matrix organization
R-HSA-1566948Elastic fibre formation
R-HSA-162582Signal Transduction
R-HSA-170834Signaling by TGF-beta Receptor Complex
R-HSA-9006936Signaling by TGFB family members

MSigDB gene sets: 476 (showing top): GSE45365_HEALTHY_VS_MCMV_INFECTION_CD8_TCELL_IFNAR_KO_UP, GOBP_MYELOID_CELL_DIFFERENTIATION, RNGTGGGC_UNKNOWN, GOBP_DENDRITIC_CELL_DIFFERENTIATION, REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX, GU_PDEF_TARGETS_DN, PAX4_01, GOBP_CARTILAGE_DEVELOPMENT, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, SP3_Q3, GOZGIT_ESR1_TARGETS_DN, GOBP_POSITIVE_REGULATION_OF_VASCULATURE_DEVELOPMENT, GOCC_CELL_SURFACE, AREB6_01, KYNG_DNA_DAMAGE_DN

GO Biological Process (21): vasculogenesis (GO:0001570), ganglioside metabolic process (GO:0001573), cell adhesion (GO:0007155), cell-matrix adhesion (GO:0007160), transforming growth factor beta receptor signaling pathway (GO:0007179), integrin-mediated signaling pathway (GO:0007229), response to virus (GO:0009615), positive regulation of gene expression (GO:0010628), negative regulation of gene expression (GO:0010629), cell migration (GO:0016477), cell adhesion mediated by integrin (GO:0033627), memory T cell differentiation (GO:0043379), positive regulation of angiogenesis (GO:0045766), cartilage development (GO:0051216), hard palate development (GO:0060022), placenta blood vessel development (GO:0060674), Langerhans cell differentiation (GO:0061520), cell-cell adhesion (GO:0098609), immune response (GO:0006955), cell surface receptor signaling pathway (GO:0007166), cell differentiation (GO:0030154)

GO Molecular Function (3): integrin binding (GO:0005178), metal ion binding (GO:0046872), extracellular matrix protein binding (GO:1990430)

GO Cellular Component (7): plasma membrane (GO:0005886), focal adhesion (GO:0005925), integrin complex (GO:0008305), cell surface (GO:0009986), integrin alphav-beta8 complex (GO:0034686), extracellular exosome (GO:0070062), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-5 pathways:

CategoryPathways
Extracellular matrix organization2
Elastic fibre formation1
Signaling by TGF-beta Receptor Complex1
Signaling by TGFB family members1
Signal Transduction1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
gene expression2
regulation of gene expression2
cell adhesion2
cellular anatomical structure2
cell differentiation1
blood vessel morphogenesis1
ceramide metabolic process1
glycosphingolipid metabolic process1
cellular process1
cell-substrate adhesion1
cellular response to transforming growth factor beta stimulus1
transforming growth factor beta receptor superfamily signaling pathway1
cell surface receptor signaling pathway1
response to other organism1
positive regulation of macromolecule biosynthetic process1
negative regulation of macromolecule biosynthetic process1
cell motility1
T cell differentiation involved in immune response1
immunological memory formation process1
angiogenesis1
regulation of angiogenesis1
positive regulation of vasculature development1
skeletal system development1
animal organ development1
connective tissue development1
anatomical structure development1
secondary palate development1
blood vessel development1
placenta development1
myeloid dendritic cell differentiation1
immune system process1
response to stimulus1
signal transduction1
signaling receptor binding1
protein-containing complex binding1
cell adhesion molecule binding1
cation binding1
protein binding1
membrane1
cell periphery1

Protein interactions and networks

STRING

1410 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
ITGB8ITGAVP06756925
ITGB8ITGA10O75578678
ITGB8ITGA11Q9UKX5658
ITGB8ITGA5P08648641
ITGB8ITGA2P17301640
ITGB8TGFB1P01137638
ITGB8TGFB3P10600628
ITGB8ITGA4P13612616
ITGB8ITGA3P26006615
ITGB8ITGA1P56199613
ITGB8TGFB2P08112597
ITGB8COL4A1P02462553
ITGB8LAMC2Q13753543
ITGB8COL1A1P02452538
ITGB8LAMC3Q9Y6N6530

IntAct

21 interactions, top by confidence:

ABTypeScore
LRRC32SMPD2psi-mi:“MI:0914”(association)0.640
ITGB8GET1psi-mi:“MI:0914”(association)0.530
RHBDL1ITGB8psi-mi:“MI:0914”(association)0.530
TGFB1LAMC1psi-mi:“MI:0914”(association)0.530
CENPHPSMD11psi-mi:“MI:0914”(association)0.530
FBXO2TMEM131Lpsi-mi:“MI:0914”(association)0.530
LGALS1PODXLpsi-mi:“MI:0914”(association)0.530
ITGAVITGB8psi-mi:“MI:0915”(physical association)0.400
Prdm16ESYT2psi-mi:“MI:0914”(association)0.350
TREX1ITGB8psi-mi:“MI:0914”(association)0.350
ITGB8TARS3psi-mi:“MI:0914”(association)0.350
TYROBPKCNN4psi-mi:“MI:0914”(association)0.350
CD3DITGB8psi-mi:“MI:0914”(association)0.350
CLGNTMEM131Lpsi-mi:“MI:0914”(association)0.350
LRRC32ORC4psi-mi:“MI:0914”(association)0.350
TYROBPSCAMP2psi-mi:“MI:0914”(association)0.350
DISC1ITGB8psi-mi:“MI:0915”(physical association)0.000
DYRK1AITGB8psi-mi:“MI:0915”(physical association)0.000

BioGRID (51): RHEB (Affinity Capture-MS), RPL23 (Affinity Capture-MS), SLC25A16 (Affinity Capture-MS), GINM1 (Affinity Capture-MS), LMF1 (Affinity Capture-MS), WRB (Affinity Capture-MS), NME4 (Affinity Capture-MS), GINM1 (Affinity Capture-MS), ACTR3C (Affinity Capture-MS), LMF1 (Affinity Capture-MS), NME4 (Affinity Capture-MS), L2HGDH (Affinity Capture-MS), WRB (Affinity Capture-MS), B3GNT2 (Affinity Capture-MS), ITGB8 (Affinity Capture-MS)

ESM2 similar proteins: A0A1D5PUP4, A5YT95, O35757, O62650, O75882, O95980, P07225, P09858, P10669, P17247, P19883, P21214, P21674, P26012, P26013, P27090, P30371, P31514, P31515, P47931, P49767, P50291, P61811, P61812, P97299, P97953, Q07257, Q0VBD0, Q17QD6, Q38L25, Q5RA73, Q6NW40, Q6V9H4, Q6ZQ11, Q863H1, Q86X52, Q8BFR2, Q8CI19, Q8JG54, Q8N475

Diamond homologs: A2A863, A5Z1X6, B0FYY4, O08680, O54890, O70309, P05106, P05107, P05556, P07228, P09055, P11584, P11835, P12606, P12607, P16144, P18084, P18563, P18564, P26010, P26011, P26012, P29319, P29320, P32592, P49134, P53712, P53713, P53714, P80747, Q07409, Q07441, Q09062, Q0VBD0, Q1RPR6, Q27591, Q27874, Q2VJ42, Q3UH53, Q3UV74

SIGNOR signaling

7 interactions.

AEffectBMechanism
ITGB8up-regulatesTGFB1
ITGB1BP1“down-regulates activity”ITGB8binding
DOK1“down-regulates activity”ITGB8binding
ITGB8“up-regulates activity”PTK2
Kindlin“up-regulates activity”ITGB8binding
TLN1“up-regulates activity”ITGB8binding
ITGB8“form complex”“Av/b8 integrin”binding

Disease & clinical

Clinical variants and AI predictions

ClinVar

132 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic2
Likely pathogenic0
Uncertain significance98
Likely benign3
Benign1

Top pathogenic / likely-pathogenic (2)

Variant IDHGVSClassification
148859GRCh38/hg38 7p21.2-15.3(chr7:15533812-24851432)x1Pathogenic
563419GRCh37/hg19 7p21.2-15.3(chr7:14544155-21719929)x3Pathogenic

SpliceAI

2907 predictions. Top by Δscore:

VariantEffectΔscore
7:20332025:T:Gdonor_loss1.0000
7:20363635:A:AGacceptor_gain1.0000
7:20363636:G:GGacceptor_gain1.0000
7:20363636:GAA:Gacceptor_gain1.0000
7:20380661:C:Gacceptor_gain1.0000
7:20380661:CACA:Cacceptor_loss1.0000
7:20380662:ACAGT:Aacceptor_gain1.0000
7:20380663:C:Gacceptor_gain1.0000
7:20380663:CAGT:Cacceptor_loss1.0000
7:20380664:A:AGacceptor_gain1.0000
7:20380664:A:Cacceptor_loss1.0000
7:20380664:AGT:Aacceptor_gain1.0000
7:20380665:G:GGacceptor_gain1.0000
7:20380665:GT:Gacceptor_gain1.0000
7:20380665:GTG:Gacceptor_gain1.0000
7:20380794:G:GTdonor_gain1.0000
7:20380827:GTGAA:Gdonor_gain1.0000
7:20380828:TG:Tdonor_gain1.0000
7:20380829:G:GTdonor_gain1.0000
7:20380829:GAA:Gdonor_gain1.0000
7:20380832:G:GGdonor_gain1.0000
7:20381725:A:Gacceptor_gain1.0000
7:20381726:GA:Gacceptor_gain1.0000
7:20381726:GAGTC:Gacceptor_gain1.0000
7:20381894:GCA:Gdonor_gain1.0000
7:20381896:A:AGdonor_gain1.0000
7:20381897:G:GGdonor_gain1.0000
7:20390328:A:AGdonor_gain1.0000
7:20391494:ATAAG:Adonor_loss1.0000
7:20391497:AGGTA:Adonor_loss1.0000

AlphaMissense

5093 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
7:20379293:T:AC211S1.000
7:20379294:G:CC211S1.000
7:20380682:T:AC218S1.000
7:20380683:G:AC218Y1.000
7:20380683:G:CC218S1.000
7:20380684:C:GC218W1.000
7:20380777:C:AN249K1.000
7:20380777:C:GN249K1.000
7:20380826:T:CC266R1.000
7:20380827:G:AC266Y1.000
7:20380828:T:GC266W1.000
7:20381739:T:AW272R1.000
7:20381739:T:CW272R1.000
7:20381741:G:CW272C1.000
7:20381741:G:TW272C1.000
7:20381790:C:GH289D1.000
7:20379108:T:CL149P0.999
7:20379117:T:CL152P0.999
7:20379122:G:CD154H0.999
7:20379122:G:TD154Y0.999
7:20379123:A:CD154A0.999
7:20379123:A:GD154G0.999
7:20379123:A:TD154V0.999
7:20379124:T:AD154E0.999
7:20379124:T:GD154E0.999
7:20379222:G:AG187E0.999
7:20379228:G:AG189D0.999
7:20379230:T:CS190P0.999
7:20379243:A:TK194I0.999
7:20379244:A:CK194N0.999

dbSNP variants (sampled 300 via entrez): RS1000024208 (7:20354226 G>T), RS1000045034 (7:20405133 C>T), RS1000054011 (7:20365044 T>C,G), RS1000098888 (7:20358806 G>A,T), RS1000122336 (7:20366292 C>A), RS1000147508 (7:20370690 A>C), RS1000154280 (7:20358655 G>A), RS1000173407 (7:20369481 C>T), RS1000179367 (7:20329310 A>G), RS1000223430 (7:20409215 T>C), RS1000272756 (7:20397895 T>C), RS1000311983 (7:20363821 A>G), RS1000353078 (7:20393400 C>A,G), RS1000355384 (7:20336273 G>A), RS1000355787 (7:20376772 G>A)

Disease associations

OMIM: gene MIM:604160 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

70 associations (top):

StudyTraitp-value
GCST004063_111Waist circumference adjusted for body mass index4.000000e-09
GCST004063_118Waist circumference adjusted for body mass index7.000000e-06
GCST004131_10Inflammatory bowel disease3.000000e-08
GCST004500_18Waist circumference adjusted for BMI (adjusted for smoking behaviour)2.000000e-08
GCST004501_93Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)6.000000e-08
GCST004504_66Waist circumference adjusted for BMI in non-smokers2.000000e-07
GCST004562_136Waist circumference adjusted for body mass index2.000000e-08
GCST004562_30Waist circumference adjusted for body mass index9.000000e-09
GCST004563_113Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)4.000000e-08
GCST004563_250Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)2.000000e-08
GCST004564_214Waist circumference adjusted for BMI in active individuals7.000000e-07
GCST004564_215Waist circumference adjusted for BMI in active individuals7.000000e-07
GCST005038_113Allergic disease (asthma, hay fever or eczema)2.000000e-14
GCST005038_114Allergic disease (asthma, hay fever or eczema)7.000000e-09
GCST005975_14Eosinophil count3.000000e-18
GCST006085_87Prostate cancer8.000000e-09
GCST007294_146Body fat distribution (trunk fat ratio)2.000000e-14
GCST007294_85Body fat distribution (trunk fat ratio)3.000000e-21
GCST007295_109Body fat distribution (leg fat ratio)6.000000e-16
GCST007295_93Body fat distribution (leg fat ratio)3.000000e-11
GCST007564_11Asthma or allergic disease (pleiotropy)3.000000e-10
GCST007692_106Chronic obstructive pulmonary disease7.000000e-09
GCST007797_54Asthma onset (childhood vs adult)7.000000e-08
GCST007798_80Asthma1.000000e-12
GCST007798_81Asthma2.000000e-15
GCST007800_60Asthma (childhood onset)8.000000e-17
GCST007800_73Asthma (childhood onset)7.000000e-22
GCST007941_11Medication use (adrenergics, inhalants)3.000000e-10
GCST008876_26Non-lobar intracerebral hemorrhage (MTAG)2.000000e-06
GCST008916_31Asthma2.000000e-10

EFO canonical traits (12, from GWAS)

EFO IDTrait name
EFO:0007789BMI-adjusted waist circumference
EFO:0004318smoking behavior
EFO:0008002physical activity measurement
EFO:0004842eosinophil count
EFO:0004341body fat distribution
EFO:0004847age at onset
EFO:0009941Inhalant adrenergic use measurement
EFO:0010178non-lobar intracerebral hemorrhage
EFO:0010517oxalate measurement
EFO:0007991eosinophil percentage of leukocytes
EFO:0007788BMI-adjusted waist-hip ratio
EFO:0008039BMI-adjusted hip circumference

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (3): CHEMBL3430892 (PROTEIN COMPLEX), CHEMBL6066568 (PROTEIN COMPLEX), CHEMBL6066571 (PROTEIN COMPLEX)

Molecules with ChEMBL bioactivity

4 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 185 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL5315046NESVATEGRAST272
CHEMBL3319236GLPG-0187196
CHEMBL4241824GSK-3008348 FREE BASE18
CHEMBL4246089GSK-300834819

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: catalytic receptor — Integrins

Most potent curated ligand interactions (1 total), top 1:

LigandActionAffinityParameter
compound 7 [PMID: 31381331]Inhibition7.6pKi

Binding affinities (BindingDB)

20 measured of 20 human assays (20 total across all organisms); most potent 20 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
(3S)-3-[3-bromo-5-(trifluoromethyl)phenyl]-3-[[2-[[5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]pyridine-3-carbonyl]amino]acetyl]amino]propanoic acidIC500.3 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-[3-chloro-5-(difluoromethyl)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido]propanoic acidIC500.5 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-[3-bromo-5-methyl-phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acidIC500.5 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-[3-bromo-5-chloro-phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido]propanoic acidIC500.6 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-(3-bromo-5-chloro-phenyl)-3-[[2-[[5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]pyridine-3-carbonyl]amino]acetyl]amino]propanoic acidIC500.6 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-[3-bromo-5-fluoro-phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acidIC500.6 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-(3,5-dibromophenyl)-3-[[2-[[5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]pyridine-3-carbonyl]amino]acetyl]amino]propanoic acidIC500.6 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-[3-bromo-5-(difluoromethyl)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido]propanoic acidIC500.7 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-[3-chloro-5-(trifluoromethyl)phenyl]3-[[2-[[5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]pyridine-3-carbonyl]amino]acetyl]amino]propanoic acidIC500.7 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-(3-bromo-5-(trifluoromethyl)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acidIC500.8 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-[3-chloro-5-(trifluoromethyl)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido]propanoic acidIC500.8 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-(3,5-dibromophenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acidIC501 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-[3,5-bis(trifluoromethyl)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido]propanoic acidIC501 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-[3,5-dichloro-phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acidIC501 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-[3-chloro-5-(trifluoromethoxy)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acidIC501 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-(3-bromo-5-(trifluoromethoxy)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acidIC501 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
(3S)-3-[3-chloro-5-methyl-phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acidIC502 nMUS-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists
3-[3-[4-(1H-benzimidazol-2-ylamino)butyl]-2-oxoimidazolidin-1-yl]-3-[3-(trifluoromethyl)phenyl]propanoic acidIC50376 nMUS-10118929: Nonanoic and decanoic acid derivatives and uses thereof
3-[2-oxo-3-[4-(pyridin-2-ylamino)butyl]imidazolidin-1-yl]-3-[3-(trifluoromethyl)phenyl]propanoic acidIC50394 nMUS-10118929: Nonanoic and decanoic acid derivatives and uses thereof
3-[3-[4-(1,4-dihydroisoquinolin-3-ylamino)butyl]-2-oxoimidazolidin-1-yl]-3-[3-(trifluoromethyl)phenyl]propanoic acidIC50622 nMUS-10118929: Nonanoic and decanoic acid derivatives and uses thereof

ChEMBL bioactivities

261 potent at pChembl≥5 of 261 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.22IC500.06nMCHEMBL4443665
9.89IC500.13nMCHEMBL5790863
9.70IC500.2nMCHEMBL3319237
9.70IC500.2nMCHEMBL5914164
9.52IC500.3nMCHEMBL5781301
9.52IC500.3nMCHEMBL5964326
9.52IC500.3nMCHEMBL5786200
9.52IC500.3nMCHEMBL5748399
9.52IC500.3nMCHEMBL5770209
9.52IC500.3nMCHEMBL5980310
9.40IC500.4nMCHEMBL5974146
9.40IC500.4nMCHEMBL5920684
9.40IC500.4nMCHEMBL5889173
9.30IC500.5nMCHEMBL5766697
9.30IC500.5nMCHEMBL5802710
9.22IC500.6nMCHEMBL5975238
9.22IC500.6nMCHEMBL5790208
9.19IC500.65nMCHEMBL244434
9.15IC500.7nMCHEMBL5819051
9.00IC501nMCHEMBL5951981
8.96IC501.1nMCHEMBL5802648
8.92IC501.2nMGLPG-0187
8.88IC501.31nMCHEMBL4449438
8.81IC501.54nMCHEMBL4520646
8.77IC501.71nMCHEMBL244013
8.74IC501.83nMCHEMBL4584228
8.70IC502nMCHEMBL5784734
8.60IC502.512nMCHEMBL4237498
8.56Kd2.754nMGSK-3008348 FREE BASE
8.56Kd2.74nMGSK-3008348 FREE BASE
8.52IC503nMCHEMBL244013
8.50IC503.162nMCHEMBL4242175
8.43IC503.73nMCHEMBL4445931
8.40IC503.981nMCHEMBL4240155
8.37IC504.3nMCHEMBL4541418
8.35IC504.5nMCHEMBL4546687
8.30IC505.012nMCHEMBL4241584
8.30IC505nMCHEMBL6027181
8.30IC505nMCHEMBL242061
8.24IC505.8nMCHEMBL4537950
8.23IC505.92nMCHEMBL5825233
8.22IC506nMCHEMBL5982261
8.22IC506nMCHEMBL5946569
8.20IC506.31nMCHEMBL4242635
8.20IC506.31nMCHEMBL4246111
8.20IC506.31nMCHEMBL4243686
8.20IC506.31nMCHEMBL4249172
8.20IC506.31nMCHEMBL4242732
8.20IC506.3nMCHEMBL4577219
8.19IC506.4nMCHEMBL4455010

PubChem BioAssay actives

162 with measured affinity, of 195 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
2-[(3S,6S,12S,15S,21S,24R)-12-[3-(diaminomethylideneamino)propyl]-21-[4-[6-[3-(2,2-difluoro-10,12-dimethyl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)propanoylamino]hexanoylamino]butyl]-22-methyl-3,15-bis(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1,4,7,10,13,16,19,22-octazabicyclo[22.3.0]heptacosan-6-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0001uM
2-[(2,6-dichlorobenzoyl)amino]-3-[5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentanoylamino]propanoic acid2065304: Inhibition of recombinant human Integrin alphaVbeta8 using TMB as substrate incubated for 2 hrs in presence of LAP by ELISAic500.0002uM
(3S)-3-(3-bromo-5-tert-butylphenyl)-3-[[2-[[3-hydroxy-5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]benzoyl]amino]acetyl]amino]propanoic acid1177816: Antagonist activity at alphavbeta8 integrin receptor (unknown origin) by cell-free ELISAic500.0002uM
(3S)-3-(3-bromo-5-chloro-2-hydroxyphenyl)-3-[[2-[[5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]pyridine-3-carbonyl]amino]acetyl]amino]propanoic acid1177808: Antagonist activity at human recombinant alphavbeta8 integrin receptor expressed in HEK293 cells after 4 hrs using p-nitrophenyl phosphate by colorimetryic500.0006uM
(2S)-3-[[2,5-dimethyl-6-[4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)piperidin-1-yl]pyrimidin-4-yl]amino]-2-[(4-methoxyphenyl)sulfonylamino]propanoic acid1177816: Antagonist activity at alphavbeta8 integrin receptor (unknown origin) by cell-free ELISAic500.0012uM
2-[(3R,9S,12S,18S,21S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9,21-bis(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0013uM
2-[(3R,9S,12S,18S,21S,24S,27S)-21-[(2S)-butan-2-yl]-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0015uM
(3S)-3-(3-bromo-5-chloro-2-hydroxyphenyl)-3-[[2-[[3-hydroxy-5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]benzoyl]amino]acetyl]amino]propanoic acid1177808: Antagonist activity at human recombinant alphavbeta8 integrin receptor expressed in HEK293 cells after 4 hrs using p-nitrophenyl phosphate by colorimetryic500.0017uM
2-[(3R,9S,12S,18S,21S,24S,27S)-21-benzyl-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0018uM
(3S)-3-[3-(oxetan-3-yloxy)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0025uM
(3S)-3-[3-(3,5-dimethylpyrazol-1-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400447: Binding affinity to human integrin alphaVbeta8 after 2 hrs by liquid scintillation countingkd0.0027uM
(3S)-3-(3-bromophenyl)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0032uM
2-[(3R,9S,12S,18S,21S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-21-(1H-indol-3-ylmethyl)-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0037uM
(3S)-3-[3-(5-methyl-1H-pyrazol-3-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0040uM
2-[(3R,9S,12S,15S,18S,21S,24S,27S)-21-benzyl-18-[3-(diaminomethylideneamino)propyl]-15-[(1R)-1-hydroxyethyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0043uM
2-[(3R,9S,12S,18S,21S,27S)-18-[3-(diaminomethylideneamino)propyl]-9,21-bis(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0045uM
(3S)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]-3-[3-(triazol-1-yl)phenyl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0050uM
2-[(3R,9S,12S,15S,18S,21S,24S,27S)-21-benzyl-18-[3-(diaminomethylideneamino)propyl]-15-(hydroxymethyl)-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0058uM
(3S)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]-3-[3-(1,2,4-triazol-4-yl)phenyl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0063uM
(3S)-3-[3-[(3S)-oxolan-3-yl]oxyphenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0063uM
(3S)-3-[3-(oxan-4-yloxy)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0063uM
(3S)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]-3-[3-(1,2,4-triazol-1-yl)phenyl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0063uM
(3S)-3-(3-cyclopropylphenyl)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0063uM
2-[(3R,9S,12S,18S,21S,24S,27S)-21-(carboxymethyl)-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0063uM
2-[(3R,9S,12S,18S,21S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-21-phenyl-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0064uM
2-[(3R,9S,12S,18S,21S,24S,27S)-21-(4-aminobutyl)-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0073uM
(3S)-3-[3-(oxolan-3-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0079uM
(3S)-3-[3-(1,4-dimethylpyrazol-5-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0079uM
(3S)-3-[3-(1,4-dimethylimidazol-2-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0079uM
2-[(3S,6S,12S,15S,21S,24R)-21-(4-acetamidobutyl)-12-[3-(diaminomethylideneamino)propyl]-22-methyl-3,15-bis(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1,4,7,10,13,16,19,22-octazabicyclo[22.3.0]heptacosan-6-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0080uM
2-[(3R,9S,12S,18S,21S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-21,24-dimethyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0081uM
2-[(3R,6S,9S,15S,18S,21S,24S)-3-benzyl-15-[3-(diaminomethylideneamino)propyl]-4,21-dimethyl-6,18-bis(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1,4,7,10,13,16,19,22-octazabicyclo[22.3.0]heptacosan-9-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0094uM
(3S)-3-[3-(3,5-dimethylpyrazol-1-yl)-5-morpholin-4-ylphenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0100uM
(3S)-3-[3-(2,5-dimethyl-1H-imidazol-4-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0100uM
(3S)-3-[3-[(3R)-oxolan-3-yl]oxyphenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0100uM
(3S)-3-[3-(3-methyl-1,2,4-triazol-4-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0100uM
(3S)-3-[3-(3,5-dimethyl-1,2,4-triazol-1-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0100uM
(3S)-3-(3-pyrazol-1-ylphenyl)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0100uM
(3S)-3-[3-(5-methylpyrazol-1-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0100uM
(3S)-3-[3-(5-methylpyrazol-1-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid;hydrochloride1577143: Inhibition of integrin alphavbeta8 (unknown origin) expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP1 (242 to 252 amino acids) incubated for 30 mins by fluorescent probe BCECF-AM based fluorescence assayic500.0100uM
2-[(3R,9S,12S,15S,18S,24S,27S,30S)-9-benzyl-24-[3-(diaminomethylideneamino)propyl]-12,27-dimethyl-15-(2-methylpropyl)-2,8,11,14,17,20,23,26,29-nonaoxo-1,7,10,13,16,19,22,25,28-nonazatricyclo[28.3.0.03,7]tritriacontan-18-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0104uM
2-[(3R,9S,12S,18S,21S,27S)-29-acetamido-18-[3-(diaminomethylideneamino)propyl]-9,21-bis(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0105uM
2-[(3R,6S,9S,15S,18S,21S,24S)-3-(4-aminobutyl)-15-[3-(diaminomethylideneamino)propyl]-4,21-dimethyl-6,18-bis(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1,4,7,10,13,16,19,22-octazabicyclo[22.3.0]heptacosan-9-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0121uM
2-[(3R,9S,12S,18S,21S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-24-(hydroxymethyl)-9,21-bis(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0125uM
2-[(3R,9S,12S,18S,21S,27S)-18-[3-(diaminomethylideneamino)propyl]-29-(hexylamino)-9,21-bis(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0128uM
2-[(3R,6S,9S,15S,18S,21S,24S)-15-[3-(diaminomethylideneamino)propyl]-4,21-dimethyl-3,6,18-tris(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1,4,7,10,13,16,19,22-octazabicyclo[22.3.0]heptacosan-9-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0150uM
(3S)-3-(3-morpholin-4-ylphenyl)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0158uM
(3S)-3-(3-cyclopropyl-5-morpholin-4-ylphenyl)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assayic500.0158uM
(3S)-3-[3-(3,5-dimethylpyrazol-1-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid;hydrochloride1577143: Inhibition of integrin alphavbeta8 (unknown origin) expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP1 (242 to 252 amino acids) incubated for 30 mins by fluorescent probe BCECF-AM based fluorescence assayic500.0158uM
2-[(3R,9S,12S,18S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assayic500.0159uM

CTD chemical–gene interactions

72 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidincreases expression, affects expression, decreases expression5
Air Pollutantsincreases expression, affects cotreatment, decreases expression, increases abundance3
Asbestos, Serpentinedecreases methylation, increases expression3
Particulate Matterincreases abundance, decreases expression3
perfluorooctane sulfonic aciddecreases expression2
Benzo(a)pyreneincreases expression2
Copperaffects binding, decreases expression2
Estradiolaffects expression, affects cotreatment, decreases expression2
Phenylmercuric Acetateaffects cotreatment, increases expression2
Aflatoxin B1decreases methylation, increases methylation2
Cadmium Chlorideincreases expression2
aristolochic acid Idecreases expression1
peracetylated N-azidoacetylmannosaminedecreases expression1
TL8-506increases expression, affects cotreatment1
tungsten carbideaffects cotreatment, decreases expression1
methylmercuric chlorideincreases expression1
alpha-pinenedecreases expression, increases abundance, affects cotreatment1
bisphenol Adecreases expression1
trichostatin Adecreases expression, increases expression1
2-butenalaffects cotreatment, decreases expression1
2,4,5,2’,4’,5’-hexachlorobiphenylaffects expression1
sodium arsenitedecreases expression1
butyraldehydedecreases expression1
nickel chlorideincreases expression1
3,4,5,3’,4’-pentachlorobiphenylincreases expression1
perfluorooctanoic acidaffects expression, decreases reaction1
3,4,3’,4’-tetrachlorobiphenylaffects expression1
rutecarpineincreases expression1
methacrylaldehydeaffects cotreatment, decreases expression, increases abundance1
S-(1,2-dichlorovinyl)cysteineaffects cotreatment, increases expression, decreases reaction1

ChEMBL screening assays

33 unique, capped per target: 32 binding, 1 admet

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL3368776BindingAntagonist activity at human recombinant alphavbeta8 integrin receptor expressed in HEK293 cells after 4 hrs using p-nitrophenyl phosphate by colorimetryStrategies to inhibit tumor associated integrin receptors: rationale for dual and multi-antagonists. — J Med Chem
CHEMBL4709542ADMETInhibition of integrin alphavbeta8 (unknown origin) by fluorescence polarization assayDiscovery of the first potent and selective αβ integrin inhibitor based on an amide-containing core. — Eur J Med Chem

Cellosaurus cell lines

1 cell lines: 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D9HIUbigene HEK293 ITGB8 KOTransformed cell lineFemale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.