ITGB8
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Summary
ITGB8 (integrin subunit beta 8, HGNC:6163) is a protein-coding gene on chromosome 7p21.1, encoding Integrin beta-8 (P26012). Integrin alpha-V:beta-8 (ITGAV:ITGB8) is a receptor for fibronectin.
This gene is a member of the integrin beta chain family and encodes a single-pass type I membrane protein with a VWFA domain and four cysteine-rich repeats. This protein noncovalently binds to an alpha subunit to form a heterodimeric integrin complex. In general, integrin complexes mediate cell-cell and cell-extracellular matrix interactions and this complex plays a role in human airway epithelial proliferation. Alternatively spliced variants which encode different protein isoforms have been described; however, not all variants have been fully characterized.
Source: NCBI Gene 3696 — RefSeq curated summary.
At a glance
- GWAS associations: 70
- Clinical variants (ClinVar): 132 total — 2 pathogenic
- Druggable target: yes — 4 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_002214
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6163 |
| Approved symbol | ITGB8 |
| Name | integrin subunit beta 8 |
| Location | 7p21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000105855 |
| Ensembl biotype | protein_coding |
| OMIM | 604160 |
| Entrez | 3696 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 8 protein_coding, 2 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000222573, ENST00000460204, ENST00000477859, ENST00000478974, ENST00000537992, ENST00000897604, ENST00000897605, ENST00000897606, ENST00000897607, ENST00000897608, ENST00000897609
RefSeq mRNA: 1 — MANE Select: NM_002214
NM_002214
CCDS: CCDS5370
Canonical transcript exons
ENST00000222573 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000672661 | 20398860 | 20398994 |
| ENSE00000672663 | 20401721 | 20402126 |
| ENSE00000672665 | 20404628 | 20404853 |
| ENSE00000672667 | 20406062 | 20406171 |
| ENSE00000672669 | 20409615 | 20409778 |
| ENSE00000831899 | 20409875 | 20415754 |
| ENSE00001875411 | 20330900 | 20331933 |
| ENSE00003470902 | 20367012 | 20367186 |
| ENSE00003513743 | 20394896 | 20394985 |
| ENSE00003590940 | 20363637 | 20363722 |
| ENSE00003598836 | 20391403 | 20391498 |
| ENSE00003617797 | 20379051 | 20379297 |
| ENSE00003671588 | 20381727 | 20381885 |
| ENSE00003687962 | 20380666 | 20380831 |
Expression profiles
Bgee: expression breadth ubiquitous, 262 present calls, max score 99.74.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 19.1679 / max 723.5212, expressed in 1442 samples.
FANTOM5 promoters (23 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 77466 | 5.8554 | 1188 |
| 77469 | 3.3847 | 842 |
| 77468 | 1.8115 | 743 |
| 77472 | 1.1133 | 481 |
| 77480 | 1.0253 | 457 |
| 77481 | 1.0220 | 358 |
| 77483 | 0.9704 | 226 |
| 77477 | 0.3827 | 150 |
| 77478 | 0.3822 | 170 |
| 77476 | 0.3678 | 165 |
Top tissues by expression
293 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pigmented layer of retina | UBERON:0001782 | 99.74 | gold quality |
| retina | UBERON:0000966 | 99.71 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 98.68 | gold quality |
| ventricular zone | UBERON:0003053 | 98.49 | gold quality |
| synovial joint | UBERON:0002217 | 98.23 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 97.70 | gold quality |
| bronchial epithelial cell | CL:0002328 | 97.67 | gold quality |
| corpus epididymis | UBERON:0004359 | 97.62 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 97.59 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 97.56 | gold quality |
| caput epididymis | UBERON:0004358 | 97.48 | gold quality |
| seminal vesicle | UBERON:0000998 | 97.08 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 96.94 | gold quality |
| oral cavity | UBERON:0000167 | 96.90 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 96.84 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 96.67 | gold quality |
| sural nerve | UBERON:0015488 | 96.59 | gold quality |
| upper leg skin | UBERON:0004262 | 96.54 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 96.37 | gold quality |
| globus pallidus | UBERON:0001875 | 96.12 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 95.61 | gold quality |
| tibial nerve | UBERON:0001323 | 95.57 | gold quality |
| medial globus pallidus | UBERON:0002477 | 95.51 | gold quality |
| cauda epididymis | UBERON:0004360 | 95.49 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 95.13 | gold quality |
| skin of hip | UBERON:0001554 | 94.82 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 94.75 | gold quality |
| corpus callosum | UBERON:0002336 | 94.75 | gold quality |
| renal medulla | UBERON:0000362 | 94.74 | gold quality |
| endometrium | UBERON:0001295 | 94.35 | gold quality |
Single-cell (SCXA)
Detected in 12 experiment(s), a significant marker in 11.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-131882 | yes | 2328.33 |
| E-CURD-119 | yes | 1815.36 |
| E-GEOD-84465 | yes | 1753.66 |
| E-GEOD-75688 | yes | 1501.34 |
| E-GEOD-98556 | yes | 1193.80 |
| E-MTAB-8559 | yes | 902.62 |
| E-GEOD-135922 | yes | 16.89 |
| E-GEOD-93593 | yes | 12.84 |
| E-MTAB-7249 | yes | 11.38 |
| E-MTAB-6678 | yes | 4.19 |
| E-MTAB-7303 | no | 177.08 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
9 targets.
| Target | Regulation |
|---|---|
| ITGA11 | Repression |
| ITGA3 | Repression |
| ITGA4 | Repression |
| ITGA5 | Activation |
| ITGA6 | Repression |
| ITGA7 | Repression |
| ITGAV | Repression |
| ITGB1 | Repression |
| ITGB5 | Repression |
Upstream regulators (CollecTRI, top): ATF2, JUN
miRNA regulators (miRDB)
342 targeting ITGB8, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
Literature-anchored findings (GeneRIF, showing 40)
- induced alpha(v)beta(8) integrin expression mediated Fas-stimulated migration (PMID:12324452)
- These data provide evidence for a functional role for integrin alphavbeta8-mediated activation of transforming growth factor-beta in control of human airway epithelial proliferation in vivo. (PMID:12875973)
- periostin has an active role in the epithelial-mesenchymal transformation and metastasis that requires cross-talk between integrin and EGFR signaling pathways (PMID:16702213)
- Fusion of epithelial cells by Epstein-Barr virus proteins is triggered by binding of viral glycoproteins gHgL to integrins alphavbeta6 or alphavbeta8. (PMID:19920174)
- Reduced expression of integrin beta8 may be involved in the pathogenesis of sporadic brain arteriovenous malformations. (PMID:20019187)
- Transcription of the transforming growth factor beta activating integrin beta8 subunit is regulated by SP3, AP-1, and the p38 pathway (PMID:20519498)
- The mRNA levels of IntegrinalphaV and Integrinbeta8 were significantly higher in LSCC tissues than that in corresponding adjacent normal tissues. (PMID:20942236)
- miR-93 promotes the growth of, and angiogenesis in astrocytomas, by suppressing, at least in part, integrin-beta8 expression. (PMID:20956944)
- The authors demonstrated that both integrins alphavbeta6 and alphavbeta8 can serve as specific receptors for Epstein-Barr virus gHgL proteins. (PMID:21178476)
- Data suggest that lung fibroblast chemokine secretion directs dendritic cell trafficking, in a manner that is critically dependent on alphavbeta8-mediated activation of TGF-beta by fibroblasts. (PMID:21646718)
- Highly angiogenic and poorly invasive glioblastomas expressed low levels of beta8 integrin, whereas highly invasive glioblastomas with limited neovascularization expressed high levels of beta8 integrin. (PMID:21859829)
- Interleukin-1beta induces increased transcriptional activation of the transforming growth factor-beta-activating integrin subunit beta8 through altering chromatin architecture. (PMID:21878622)
- Deletion of the Itgb8 gene from retinal ganglia cells and Mu ller glia, but not astrocytes, results in highly abnormal vascular patterning and instability. (PMID:22279205)
- ITGB8 silencing may change lung cancer cells to a less invasive phenotype through alteration in the expression of metastasis-related genes. (PMID:22753015)
- alphavbeta8 integrin, via interactions with RhoGDI1, regulates activation of Rho proteins to promote glioblastoma multiforme cell invasiveness. (PMID:23283986)
- Desmoglein-2 co-localizes with integrin-beta8 in N-MVECs. (PMID:23874518)
- Brain metastases ITGB8 expression exhibits considerable heterogeneity according to tumor origin. (PMID:24294359)
- alphavbeta6- and alphavbeta8-integrins acted independently and are thus interchangeable as receptors for Herpes simplex type 1 virus entry. (PMID:24367260)
- data show that integrin beta 8, but not integrin beta 5 or integrin beta 6, protein expression is increased in liver specimens of patients with biliary atresia (PMID:25079481)
- overexpression of integrin alphav induces integrin alphavb8 heterodimer formation and the binding of integrin alphavbeta8 to type collagen might enhance the proliferation and invasion of SCC cells via the activation of the MEK/ERK signaling pathway. (PMID:25190218)
- Integrin Beta8 plays a role in the motility of prostate cancer cells. (PMID:25886373)
- Herpes simplex virus entry is enabled by gH/gL interaction with alphavbeta6- or alphavbeta8-integrin receptors. (PMID:26157134)
- Integrins alphavbeta6 and alphavbeta8 were expressed in non-overlapping patterns by keratinocytes and maintained the epidermal residence of Langerhans cells and tissue resident memory T cells by activating latent TGF-beta. (PMID:26901152)
- Integrin beta8 was differentially expressed between Fibromyalgia patients and healthy controls. (PMID:27157394)
- Among Greek and Polish patients with intracerebral hemorrhage, heterozygous individuals with the rs10251386 and the rs10239099 of the ITGB8 gene had significantly lower age of ICH onset compared to the wild-type genotypes. (PMID:27476161)
- this study uncovers a novel pathway by which the TGFbeta-activating integrin alphavbeta8 is expressed in the human intestine on dendritic cell subsets, which is upregulated in patients with inflammatory bowel disease (PMID:27782111)
- Although Mn(2+) potently activates other integrins and increases affinity of alphaVbeta6 for pro-TGF-beta1 25- to 55-fold, it increases alphaVbeta8 affinity only 2- to 3-fold. (PMID:28484027)
- In cellular model, the microRNA-513a-3p was identified as a novel element targeting ITG-beta8, thereby controlling the protein level and its molecular function in the controlling of migration and pro-inflammatory environment. (PMID:29204818)
- The results demonstrated that the hsa_circ_0046701/miR-142-3p/ITGB8 axis might play critical regulatory roles in the pathogenesis and development of glioma. (PMID:29337055)
- our results indicate that miR-199a-3p enhances cisplatinsensitivity of ovarian cancer cells through downregulating ITGB8 expression, and miR-199a-3p may serve as a therapeutic target for the treatment of ovarian cancer patients with cisplatin-resistance. (PMID:29436681)
- ITGB8 is identified as a novel target of miR-26a-5p. (PMID:29746867)
- findings with the alphavbeta3 integrin suggests that our model of stabilizing the extended-closed conformation is generalizable to other integrins. (PMID:30061598)
- Data uncovered that ITGB8 was a target gene of miR-106b. ITGB8 mRNA and protein levels decreased in colon cancer cells overexpressing miR-106b. (PMID:30520100)
- ITGB8 was significantly upregulated in ovarian cancer tissues compared to that in normal ovary tissues. High-grade Serous Ovarian Carcinoma patients with high ITGB8 expression had significantly shorter overall survival and recurrence-free survival compared to their low-expression counterparts. Increased ITGB8 expression might be an independent prognostic indicator of unfavorable overall survival (PMID:30531684)
- ITGB8 gene SNPs may be implicated in the risk of hemorrhagic event after a traumatic brain injury. (PMID:31033358)
- Lack of a binding site for one of three betaI domain divalent cations and a unique beta6-alpha7 loop conformation in beta8 facilitate movements of the alpha1 and alpha1’ helices at the ligand binding pocket toward the high affinity state. (PMID:31792290)
- Circular RNA TTBK2 regulates cell proliferation, invasion and ferroptosis via miR-761/ITGB8 axis in glioma. (PMID:32196629)
- The long non-coding RNA PVT1/miR-145-5p/ITGB8 axis regulates cell proliferation, apoptosis, migration and invasion in non-small cell lung cancer cells. (PMID:32202906)
- lncRNA ITGB8-AS1 functions as a ceRNA to promote colorectal cancer growth and migration through integrin-mediated focal adhesion signaling. (PMID:34371180)
- Integrin subunit beta 8 contributes to lenvatinib resistance in HCC. (PMID:35238496)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | itgb8 | ENSDARG00000028222 |
| mus_musculus | Itgb8 | ENSMUSG00000025321 |
| rattus_norvegicus | Itgb8 | ENSRNOG00000006569 |
Paralogs (8): ITGB5 (ENSG00000082781), ITGB6 (ENSG00000115221), ITGB4 (ENSG00000132470), ITGB7 (ENSG00000139626), ITGB1 (ENSG00000150093), ITGB2 (ENSG00000160255), ITGBL1 (ENSG00000198542), ITGB3 (ENSG00000259207)
Protein
Protein identifiers
Integrin beta-8 — P26012 (reviewed: P26012)
All UniProt accessions (1): P26012
UniProt curated annotations — full annotation on UniProt →
Function. Integrin alpha-V:beta-8 (ITGAV:ITGB8) is a receptor for fibronectin. It recognizes the sequence R-G-D in its ligands. Integrin alpha-V:beta-6 (ITGAV:ITGB6) mediates R-G-D-dependent release of transforming growth factor beta-1 (TGF-beta-1) from regulatory Latency-associated peptide (LAP), thereby playing a key role in TGF-beta-1 activation on the surface of activated regulatory T-cells (Tregs). Required during vasculogenesis.
Subunit / interactions. Heterodimer of an alpha and a beta subunit. Beta-8 (ITGB8) associates with alpha-V (ITGAV) to form ITGAV:ITGB8. ITGAV:ITGB8 interacts with TGFB1.
Subcellular location. Cell membrane.
Tissue specificity. Placenta, kidney, brain, ovary, uterus and in several transformed cells. Transiently expressed in 293 human embryonic kidney cells.
Domain organisation. The VWFA domain (or beta I domain) contains two cation-binding sites: the ligand-associated metal ion-binding site (LIMBS or SyMBS) and the metal ion-dependent adhesion site (MIDAS). Unlike in the other beta integrins, the cation-binding site adjacent MIDAS site (ADMIDAS) in ITGB8 is not functional due to the presence of two Asn residues instead of 2 Asp residues. This domain is also part of the ligand-binding site.
Similarity. Belongs to the integrin beta chain family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P26012-1 | 1 | yes |
| P26012-2 | 2 |
RefSeq proteins (1): NP_002205* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000742 | EGF | Domain |
| IPR002369 | Integrin_bsu_VWA | Domain |
| IPR015812 | Integrin_bsu | Family |
| IPR016201 | PSI | Domain |
| IPR032695 | Integrin_dom_sf | Homologous_superfamily |
| IPR033760 | Integrin_beta_N | Domain |
| IPR036465 | vWFA_dom_sf | Homologous_superfamily |
| IPR057073 | EGF_integrin_2 | Domain |
| IPR057243 | Integrin_I-EGF_CS | Conserved_site |
Pfam: PF00362, PF17205, PF23105, PF23106
UniProt features (91 total): disulfide bond 25, strand 22, helix 13, binding site 8, glycosylation site 7, domain 6, turn 3, topological domain 2, signal peptide 1, chain 1, transmembrane region 1, splice variant 1, sequence variant 1
Structure
Experimental structures (PDB)
11 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6OM1 | X-RAY DIFFRACTION | 2.66 |
| 8VS6 | ELECTRON MICROSCOPY | 2.73 |
| 6OM2 | X-RAY DIFFRACTION | 2.77 |
| 9IND | ELECTRON MICROSCOPY | 2.88 |
| 8TCF | ELECTRON MICROSCOPY | 2.9 |
| 8VSD | ELECTRON MICROSCOPY | 3.2 |
| 7Y1T | ELECTRON MICROSCOPY | 3.24 |
| 6UJA | ELECTRON MICROSCOPY | 3.3 |
| 6UJB | ELECTRON MICROSCOPY | 3.51 |
| 6UJC | ELECTRON MICROSCOPY | 3.56 |
| 6DJP | ELECTRON MICROSCOPY | 4.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P26012-F1 | 76.57 | 0.34 |
Antibody-complex structures (SAbDab): 4 — 6DJP, 6UJB, 6UJC, 9IND
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 154 (in midas binding site); 156 (in midas binding site); 193 (in limbs binding site); 249 (in limbs binding site); 251 (in limbs binding site); 253 (in limbs binding site); 254 (in limbs binding site); 254 (in midas binding site)
Disulfide bonds (25): 47–65, 55–469, 58–83, 68–94, 211–218, 266–307, 407–419, 439–467, 471–494, 471–491, 481–494, 499–528, 511–526, 520–531, 533–546, 553–567, 561–572, 574–583, 585–609, 593–607 …
Glycosylation sites (7): 233, 402, 421, 431, 456, 466, 648
Function
Pathways and Gene Ontology
Reactome pathways
8 pathways
| ID | Pathway |
|---|---|
| R-HSA-2129379 | Molecules associated with elastic fibres |
| R-HSA-216083 | Integrin cell surface interactions |
| R-HSA-2173789 | TGF-beta receptor signaling activates SMADs |
| R-HSA-1474244 | Extracellular matrix organization |
| R-HSA-1566948 | Elastic fibre formation |
| R-HSA-162582 | Signal Transduction |
| R-HSA-170834 | Signaling by TGF-beta Receptor Complex |
| R-HSA-9006936 | Signaling by TGFB family members |
MSigDB gene sets: 476 (showing top):
GSE45365_HEALTHY_VS_MCMV_INFECTION_CD8_TCELL_IFNAR_KO_UP, GOBP_MYELOID_CELL_DIFFERENTIATION, RNGTGGGC_UNKNOWN, GOBP_DENDRITIC_CELL_DIFFERENTIATION, REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX, GU_PDEF_TARGETS_DN, PAX4_01, GOBP_CARTILAGE_DEVELOPMENT, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, SP3_Q3, GOZGIT_ESR1_TARGETS_DN, GOBP_POSITIVE_REGULATION_OF_VASCULATURE_DEVELOPMENT, GOCC_CELL_SURFACE, AREB6_01, KYNG_DNA_DAMAGE_DN
GO Biological Process (21): vasculogenesis (GO:0001570), ganglioside metabolic process (GO:0001573), cell adhesion (GO:0007155), cell-matrix adhesion (GO:0007160), transforming growth factor beta receptor signaling pathway (GO:0007179), integrin-mediated signaling pathway (GO:0007229), response to virus (GO:0009615), positive regulation of gene expression (GO:0010628), negative regulation of gene expression (GO:0010629), cell migration (GO:0016477), cell adhesion mediated by integrin (GO:0033627), memory T cell differentiation (GO:0043379), positive regulation of angiogenesis (GO:0045766), cartilage development (GO:0051216), hard palate development (GO:0060022), placenta blood vessel development (GO:0060674), Langerhans cell differentiation (GO:0061520), cell-cell adhesion (GO:0098609), immune response (GO:0006955), cell surface receptor signaling pathway (GO:0007166), cell differentiation (GO:0030154)
GO Molecular Function (3): integrin binding (GO:0005178), metal ion binding (GO:0046872), extracellular matrix protein binding (GO:1990430)
GO Cellular Component (7): plasma membrane (GO:0005886), focal adhesion (GO:0005925), integrin complex (GO:0008305), cell surface (GO:0009986), integrin alphav-beta8 complex (GO:0034686), extracellular exosome (GO:0070062), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Extracellular matrix organization | 2 |
| Elastic fibre formation | 1 |
| Signaling by TGF-beta Receptor Complex | 1 |
| Signaling by TGFB family members | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| gene expression | 2 |
| regulation of gene expression | 2 |
| cell adhesion | 2 |
| cellular anatomical structure | 2 |
| cell differentiation | 1 |
| blood vessel morphogenesis | 1 |
| ceramide metabolic process | 1 |
| glycosphingolipid metabolic process | 1 |
| cellular process | 1 |
| cell-substrate adhesion | 1 |
| cellular response to transforming growth factor beta stimulus | 1 |
| transforming growth factor beta receptor superfamily signaling pathway | 1 |
| cell surface receptor signaling pathway | 1 |
| response to other organism | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| negative regulation of macromolecule biosynthetic process | 1 |
| cell motility | 1 |
| T cell differentiation involved in immune response | 1 |
| immunological memory formation process | 1 |
| angiogenesis | 1 |
| regulation of angiogenesis | 1 |
| positive regulation of vasculature development | 1 |
| skeletal system development | 1 |
| animal organ development | 1 |
| connective tissue development | 1 |
| anatomical structure development | 1 |
| secondary palate development | 1 |
| blood vessel development | 1 |
| placenta development | 1 |
| myeloid dendritic cell differentiation | 1 |
| immune system process | 1 |
| response to stimulus | 1 |
| signal transduction | 1 |
| signaling receptor binding | 1 |
| protein-containing complex binding | 1 |
| cell adhesion molecule binding | 1 |
| cation binding | 1 |
| protein binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
Protein interactions and networks
STRING
1410 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ITGB8 | ITGAV | P06756 | 925 |
| ITGB8 | ITGA10 | O75578 | 678 |
| ITGB8 | ITGA11 | Q9UKX5 | 658 |
| ITGB8 | ITGA5 | P08648 | 641 |
| ITGB8 | ITGA2 | P17301 | 640 |
| ITGB8 | TGFB1 | P01137 | 638 |
| ITGB8 | TGFB3 | P10600 | 628 |
| ITGB8 | ITGA4 | P13612 | 616 |
| ITGB8 | ITGA3 | P26006 | 615 |
| ITGB8 | ITGA1 | P56199 | 613 |
| ITGB8 | TGFB2 | P08112 | 597 |
| ITGB8 | COL4A1 | P02462 | 553 |
| ITGB8 | LAMC2 | Q13753 | 543 |
| ITGB8 | COL1A1 | P02452 | 538 |
| ITGB8 | LAMC3 | Q9Y6N6 | 530 |
IntAct
21 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LRRC32 | SMPD2 | psi-mi:“MI:0914”(association) | 0.640 |
| ITGB8 | GET1 | psi-mi:“MI:0914”(association) | 0.530 |
| RHBDL1 | ITGB8 | psi-mi:“MI:0914”(association) | 0.530 |
| TGFB1 | LAMC1 | psi-mi:“MI:0914”(association) | 0.530 |
| CENPH | PSMD11 | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS1 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| ITGAV | ITGB8 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Prdm16 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| TREX1 | ITGB8 | psi-mi:“MI:0914”(association) | 0.350 |
| ITGB8 | TARS3 | psi-mi:“MI:0914”(association) | 0.350 |
| TYROBP | KCNN4 | psi-mi:“MI:0914”(association) | 0.350 |
| CD3D | ITGB8 | psi-mi:“MI:0914”(association) | 0.350 |
| CLGN | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| LRRC32 | ORC4 | psi-mi:“MI:0914”(association) | 0.350 |
| TYROBP | SCAMP2 | psi-mi:“MI:0914”(association) | 0.350 |
| DISC1 | ITGB8 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DYRK1A | ITGB8 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (51): RHEB (Affinity Capture-MS), RPL23 (Affinity Capture-MS), SLC25A16 (Affinity Capture-MS), GINM1 (Affinity Capture-MS), LMF1 (Affinity Capture-MS), WRB (Affinity Capture-MS), NME4 (Affinity Capture-MS), GINM1 (Affinity Capture-MS), ACTR3C (Affinity Capture-MS), LMF1 (Affinity Capture-MS), NME4 (Affinity Capture-MS), L2HGDH (Affinity Capture-MS), WRB (Affinity Capture-MS), B3GNT2 (Affinity Capture-MS), ITGB8 (Affinity Capture-MS)
ESM2 similar proteins: A0A1D5PUP4, A5YT95, O35757, O62650, O75882, O95980, P07225, P09858, P10669, P17247, P19883, P21214, P21674, P26012, P26013, P27090, P30371, P31514, P31515, P47931, P49767, P50291, P61811, P61812, P97299, P97953, Q07257, Q0VBD0, Q17QD6, Q38L25, Q5RA73, Q6NW40, Q6V9H4, Q6ZQ11, Q863H1, Q86X52, Q8BFR2, Q8CI19, Q8JG54, Q8N475
Diamond homologs: A2A863, A5Z1X6, B0FYY4, O08680, O54890, O70309, P05106, P05107, P05556, P07228, P09055, P11584, P11835, P12606, P12607, P16144, P18084, P18563, P18564, P26010, P26011, P26012, P29319, P29320, P32592, P49134, P53712, P53713, P53714, P80747, Q07409, Q07441, Q09062, Q0VBD0, Q1RPR6, Q27591, Q27874, Q2VJ42, Q3UH53, Q3UV74
SIGNOR signaling
7 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ITGB8 | up-regulates | TGFB1 | |
| ITGB1BP1 | “down-regulates activity” | ITGB8 | binding |
| DOK1 | “down-regulates activity” | ITGB8 | binding |
| ITGB8 | “up-regulates activity” | PTK2 | |
| Kindlin | “up-regulates activity” | ITGB8 | binding |
| TLN1 | “up-regulates activity” | ITGB8 | binding |
| ITGB8 | “form complex” | “Av/b8 integrin” | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
132 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 98 |
| Likely benign | 3 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 148859 | GRCh38/hg38 7p21.2-15.3(chr7:15533812-24851432)x1 | Pathogenic |
| 563419 | GRCh37/hg19 7p21.2-15.3(chr7:14544155-21719929)x3 | Pathogenic |
SpliceAI
2907 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:20332025:T:G | donor_loss | 1.0000 |
| 7:20363635:A:AG | acceptor_gain | 1.0000 |
| 7:20363636:G:GG | acceptor_gain | 1.0000 |
| 7:20363636:GAA:G | acceptor_gain | 1.0000 |
| 7:20380661:C:G | acceptor_gain | 1.0000 |
| 7:20380661:CACA:C | acceptor_loss | 1.0000 |
| 7:20380662:ACAGT:A | acceptor_gain | 1.0000 |
| 7:20380663:C:G | acceptor_gain | 1.0000 |
| 7:20380663:CAGT:C | acceptor_loss | 1.0000 |
| 7:20380664:A:AG | acceptor_gain | 1.0000 |
| 7:20380664:A:C | acceptor_loss | 1.0000 |
| 7:20380664:AGT:A | acceptor_gain | 1.0000 |
| 7:20380665:G:GG | acceptor_gain | 1.0000 |
| 7:20380665:GT:G | acceptor_gain | 1.0000 |
| 7:20380665:GTG:G | acceptor_gain | 1.0000 |
| 7:20380794:G:GT | donor_gain | 1.0000 |
| 7:20380827:GTGAA:G | donor_gain | 1.0000 |
| 7:20380828:TG:T | donor_gain | 1.0000 |
| 7:20380829:G:GT | donor_gain | 1.0000 |
| 7:20380829:GAA:G | donor_gain | 1.0000 |
| 7:20380832:G:GG | donor_gain | 1.0000 |
| 7:20381725:A:G | acceptor_gain | 1.0000 |
| 7:20381726:GA:G | acceptor_gain | 1.0000 |
| 7:20381726:GAGTC:G | acceptor_gain | 1.0000 |
| 7:20381894:GCA:G | donor_gain | 1.0000 |
| 7:20381896:A:AG | donor_gain | 1.0000 |
| 7:20381897:G:GG | donor_gain | 1.0000 |
| 7:20390328:A:AG | donor_gain | 1.0000 |
| 7:20391494:ATAAG:A | donor_loss | 1.0000 |
| 7:20391497:AGGTA:A | donor_loss | 1.0000 |
AlphaMissense
5093 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:20379293:T:A | C211S | 1.000 |
| 7:20379294:G:C | C211S | 1.000 |
| 7:20380682:T:A | C218S | 1.000 |
| 7:20380683:G:A | C218Y | 1.000 |
| 7:20380683:G:C | C218S | 1.000 |
| 7:20380684:C:G | C218W | 1.000 |
| 7:20380777:C:A | N249K | 1.000 |
| 7:20380777:C:G | N249K | 1.000 |
| 7:20380826:T:C | C266R | 1.000 |
| 7:20380827:G:A | C266Y | 1.000 |
| 7:20380828:T:G | C266W | 1.000 |
| 7:20381739:T:A | W272R | 1.000 |
| 7:20381739:T:C | W272R | 1.000 |
| 7:20381741:G:C | W272C | 1.000 |
| 7:20381741:G:T | W272C | 1.000 |
| 7:20381790:C:G | H289D | 1.000 |
| 7:20379108:T:C | L149P | 0.999 |
| 7:20379117:T:C | L152P | 0.999 |
| 7:20379122:G:C | D154H | 0.999 |
| 7:20379122:G:T | D154Y | 0.999 |
| 7:20379123:A:C | D154A | 0.999 |
| 7:20379123:A:G | D154G | 0.999 |
| 7:20379123:A:T | D154V | 0.999 |
| 7:20379124:T:A | D154E | 0.999 |
| 7:20379124:T:G | D154E | 0.999 |
| 7:20379222:G:A | G187E | 0.999 |
| 7:20379228:G:A | G189D | 0.999 |
| 7:20379230:T:C | S190P | 0.999 |
| 7:20379243:A:T | K194I | 0.999 |
| 7:20379244:A:C | K194N | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000024208 (7:20354226 G>T), RS1000045034 (7:20405133 C>T), RS1000054011 (7:20365044 T>C,G), RS1000098888 (7:20358806 G>A,T), RS1000122336 (7:20366292 C>A), RS1000147508 (7:20370690 A>C), RS1000154280 (7:20358655 G>A), RS1000173407 (7:20369481 C>T), RS1000179367 (7:20329310 A>G), RS1000223430 (7:20409215 T>C), RS1000272756 (7:20397895 T>C), RS1000311983 (7:20363821 A>G), RS1000353078 (7:20393400 C>A,G), RS1000355384 (7:20336273 G>A), RS1000355787 (7:20376772 G>A)
Disease associations
OMIM: gene MIM:604160 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
70 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004063_111 | Waist circumference adjusted for body mass index | 4.000000e-09 |
| GCST004063_118 | Waist circumference adjusted for body mass index | 7.000000e-06 |
| GCST004131_10 | Inflammatory bowel disease | 3.000000e-08 |
| GCST004500_18 | Waist circumference adjusted for BMI (adjusted for smoking behaviour) | 2.000000e-08 |
| GCST004501_93 | Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction) | 6.000000e-08 |
| GCST004504_66 | Waist circumference adjusted for BMI in non-smokers | 2.000000e-07 |
| GCST004562_136 | Waist circumference adjusted for body mass index | 2.000000e-08 |
| GCST004562_30 | Waist circumference adjusted for body mass index | 9.000000e-09 |
| GCST004563_113 | Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction) | 4.000000e-08 |
| GCST004563_250 | Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction) | 2.000000e-08 |
| GCST004564_214 | Waist circumference adjusted for BMI in active individuals | 7.000000e-07 |
| GCST004564_215 | Waist circumference adjusted for BMI in active individuals | 7.000000e-07 |
| GCST005038_113 | Allergic disease (asthma, hay fever or eczema) | 2.000000e-14 |
| GCST005038_114 | Allergic disease (asthma, hay fever or eczema) | 7.000000e-09 |
| GCST005975_14 | Eosinophil count | 3.000000e-18 |
| GCST006085_87 | Prostate cancer | 8.000000e-09 |
| GCST007294_146 | Body fat distribution (trunk fat ratio) | 2.000000e-14 |
| GCST007294_85 | Body fat distribution (trunk fat ratio) | 3.000000e-21 |
| GCST007295_109 | Body fat distribution (leg fat ratio) | 6.000000e-16 |
| GCST007295_93 | Body fat distribution (leg fat ratio) | 3.000000e-11 |
| GCST007564_11 | Asthma or allergic disease (pleiotropy) | 3.000000e-10 |
| GCST007692_106 | Chronic obstructive pulmonary disease | 7.000000e-09 |
| GCST007797_54 | Asthma onset (childhood vs adult) | 7.000000e-08 |
| GCST007798_80 | Asthma | 1.000000e-12 |
| GCST007798_81 | Asthma | 2.000000e-15 |
| GCST007800_60 | Asthma (childhood onset) | 8.000000e-17 |
| GCST007800_73 | Asthma (childhood onset) | 7.000000e-22 |
| GCST007941_11 | Medication use (adrenergics, inhalants) | 3.000000e-10 |
| GCST008876_26 | Non-lobar intracerebral hemorrhage (MTAG) | 2.000000e-06 |
| GCST008916_31 | Asthma | 2.000000e-10 |
EFO canonical traits (12, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0004318 | smoking behavior |
| EFO:0008002 | physical activity measurement |
| EFO:0004842 | eosinophil count |
| EFO:0004341 | body fat distribution |
| EFO:0004847 | age at onset |
| EFO:0009941 | Inhalant adrenergic use measurement |
| EFO:0010178 | non-lobar intracerebral hemorrhage |
| EFO:0010517 | oxalate measurement |
| EFO:0007991 | eosinophil percentage of leukocytes |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008039 | BMI-adjusted hip circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (3): CHEMBL3430892 (PROTEIN COMPLEX), CHEMBL6066568 (PROTEIN COMPLEX), CHEMBL6066571 (PROTEIN COMPLEX)
Molecules with ChEMBL bioactivity
4 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 185 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL5315046 | NESVATEGRAST | 2 | 72 |
| CHEMBL3319236 | GLPG-0187 | 1 | 96 |
| CHEMBL4241824 | GSK-3008348 FREE BASE | 1 | 8 |
| CHEMBL4246089 | GSK-3008348 | 1 | 9 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — Integrins
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| compound 7 [PMID: 31381331] | Inhibition | 7.6 | pKi |
Binding affinities (BindingDB)
20 measured of 20 human assays (20 total across all organisms); most potent 20 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| (3S)-3-[3-bromo-5-(trifluoromethyl)phenyl]-3-[[2-[[5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]pyridine-3-carbonyl]amino]acetyl]amino]propanoic acid | IC50 | 0.3 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-[3-chloro-5-(difluoromethyl)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido]propanoic acid | IC50 | 0.5 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-[3-bromo-5-methyl-phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acid | IC50 | 0.5 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-[3-bromo-5-chloro-phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido]propanoic acid | IC50 | 0.6 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-(3-bromo-5-chloro-phenyl)-3-[[2-[[5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]pyridine-3-carbonyl]amino]acetyl]amino]propanoic acid | IC50 | 0.6 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-[3-bromo-5-fluoro-phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acid | IC50 | 0.6 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-(3,5-dibromophenyl)-3-[[2-[[5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]pyridine-3-carbonyl]amino]acetyl]amino]propanoic acid | IC50 | 0.6 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-[3-bromo-5-(difluoromethyl)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido]propanoic acid | IC50 | 0.7 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-[3-chloro-5-(trifluoromethyl)phenyl]3-[[2-[[5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]pyridine-3-carbonyl]amino]acetyl]amino]propanoic acid | IC50 | 0.7 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-(3-bromo-5-(trifluoromethyl)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acid | IC50 | 0.8 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-[3-chloro-5-(trifluoromethyl)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido]propanoic acid | IC50 | 0.8 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-(3,5-dibromophenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acid | IC50 | 1 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-[3,5-bis(trifluoromethyl)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido]propanoic acid | IC50 | 1 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-[3,5-dichloro-phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acid | IC50 | 1 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-[3-chloro-5-(trifluoromethoxy)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acid | IC50 | 1 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-(3-bromo-5-(trifluoromethoxy)phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acid | IC50 | 1 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| (3S)-3-[3-chloro-5-methyl-phenyl)-3-(2-(3-hydroxy-5-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino)benzamido)acetamido)propanoic acid | IC50 | 2 nM | US-10035778: Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
| 3-[3-[4-(1H-benzimidazol-2-ylamino)butyl]-2-oxoimidazolidin-1-yl]-3-[3-(trifluoromethyl)phenyl]propanoic acid | IC50 | 376 nM | US-10118929: Nonanoic and decanoic acid derivatives and uses thereof |
| 3-[2-oxo-3-[4-(pyridin-2-ylamino)butyl]imidazolidin-1-yl]-3-[3-(trifluoromethyl)phenyl]propanoic acid | IC50 | 394 nM | US-10118929: Nonanoic and decanoic acid derivatives and uses thereof |
| 3-[3-[4-(1,4-dihydroisoquinolin-3-ylamino)butyl]-2-oxoimidazolidin-1-yl]-3-[3-(trifluoromethyl)phenyl]propanoic acid | IC50 | 622 nM | US-10118929: Nonanoic and decanoic acid derivatives and uses thereof |
ChEMBL bioactivities
261 potent at pChembl≥5 of 261 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.22 | IC50 | 0.06 | nM | CHEMBL4443665 |
| 9.89 | IC50 | 0.13 | nM | CHEMBL5790863 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL3319237 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL5914164 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL5781301 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL5964326 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL5786200 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL5748399 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL5770209 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL5980310 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL5974146 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL5920684 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL5889173 |
| 9.30 | IC50 | 0.5 | nM | CHEMBL5766697 |
| 9.30 | IC50 | 0.5 | nM | CHEMBL5802710 |
| 9.22 | IC50 | 0.6 | nM | CHEMBL5975238 |
| 9.22 | IC50 | 0.6 | nM | CHEMBL5790208 |
| 9.19 | IC50 | 0.65 | nM | CHEMBL244434 |
| 9.15 | IC50 | 0.7 | nM | CHEMBL5819051 |
| 9.00 | IC50 | 1 | nM | CHEMBL5951981 |
| 8.96 | IC50 | 1.1 | nM | CHEMBL5802648 |
| 8.92 | IC50 | 1.2 | nM | GLPG-0187 |
| 8.88 | IC50 | 1.31 | nM | CHEMBL4449438 |
| 8.81 | IC50 | 1.54 | nM | CHEMBL4520646 |
| 8.77 | IC50 | 1.71 | nM | CHEMBL244013 |
| 8.74 | IC50 | 1.83 | nM | CHEMBL4584228 |
| 8.70 | IC50 | 2 | nM | CHEMBL5784734 |
| 8.60 | IC50 | 2.512 | nM | CHEMBL4237498 |
| 8.56 | Kd | 2.754 | nM | GSK-3008348 FREE BASE |
| 8.56 | Kd | 2.74 | nM | GSK-3008348 FREE BASE |
| 8.52 | IC50 | 3 | nM | CHEMBL244013 |
| 8.50 | IC50 | 3.162 | nM | CHEMBL4242175 |
| 8.43 | IC50 | 3.73 | nM | CHEMBL4445931 |
| 8.40 | IC50 | 3.981 | nM | CHEMBL4240155 |
| 8.37 | IC50 | 4.3 | nM | CHEMBL4541418 |
| 8.35 | IC50 | 4.5 | nM | CHEMBL4546687 |
| 8.30 | IC50 | 5.012 | nM | CHEMBL4241584 |
| 8.30 | IC50 | 5 | nM | CHEMBL6027181 |
| 8.30 | IC50 | 5 | nM | CHEMBL242061 |
| 8.24 | IC50 | 5.8 | nM | CHEMBL4537950 |
| 8.23 | IC50 | 5.92 | nM | CHEMBL5825233 |
| 8.22 | IC50 | 6 | nM | CHEMBL5982261 |
| 8.22 | IC50 | 6 | nM | CHEMBL5946569 |
| 8.20 | IC50 | 6.31 | nM | CHEMBL4242635 |
| 8.20 | IC50 | 6.31 | nM | CHEMBL4246111 |
| 8.20 | IC50 | 6.31 | nM | CHEMBL4243686 |
| 8.20 | IC50 | 6.31 | nM | CHEMBL4249172 |
| 8.20 | IC50 | 6.31 | nM | CHEMBL4242732 |
| 8.20 | IC50 | 6.3 | nM | CHEMBL4577219 |
| 8.19 | IC50 | 6.4 | nM | CHEMBL4455010 |
PubChem BioAssay actives
162 with measured affinity, of 195 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-[(3S,6S,12S,15S,21S,24R)-12-[3-(diaminomethylideneamino)propyl]-21-[4-[6-[3-(2,2-difluoro-10,12-dimethyl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)propanoylamino]hexanoylamino]butyl]-22-methyl-3,15-bis(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1,4,7,10,13,16,19,22-octazabicyclo[22.3.0]heptacosan-6-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0001 | uM |
| 2-[(2,6-dichlorobenzoyl)amino]-3-[5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentanoylamino]propanoic acid | 2065304: Inhibition of recombinant human Integrin alphaVbeta8 using TMB as substrate incubated for 2 hrs in presence of LAP by ELISA | ic50 | 0.0002 | uM |
| (3S)-3-(3-bromo-5-tert-butylphenyl)-3-[[2-[[3-hydroxy-5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]benzoyl]amino]acetyl]amino]propanoic acid | 1177816: Antagonist activity at alphavbeta8 integrin receptor (unknown origin) by cell-free ELISA | ic50 | 0.0002 | uM |
| (3S)-3-(3-bromo-5-chloro-2-hydroxyphenyl)-3-[[2-[[5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]pyridine-3-carbonyl]amino]acetyl]amino]propanoic acid | 1177808: Antagonist activity at human recombinant alphavbeta8 integrin receptor expressed in HEK293 cells after 4 hrs using p-nitrophenyl phosphate by colorimetry | ic50 | 0.0006 | uM |
| (2S)-3-[[2,5-dimethyl-6-[4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)piperidin-1-yl]pyrimidin-4-yl]amino]-2-[(4-methoxyphenyl)sulfonylamino]propanoic acid | 1177816: Antagonist activity at alphavbeta8 integrin receptor (unknown origin) by cell-free ELISA | ic50 | 0.0012 | uM |
| 2-[(3R,9S,12S,18S,21S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9,21-bis(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0013 | uM |
| 2-[(3R,9S,12S,18S,21S,24S,27S)-21-[(2S)-butan-2-yl]-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0015 | uM |
| (3S)-3-(3-bromo-5-chloro-2-hydroxyphenyl)-3-[[2-[[3-hydroxy-5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidin-2-yl)amino]benzoyl]amino]acetyl]amino]propanoic acid | 1177808: Antagonist activity at human recombinant alphavbeta8 integrin receptor expressed in HEK293 cells after 4 hrs using p-nitrophenyl phosphate by colorimetry | ic50 | 0.0017 | uM |
| 2-[(3R,9S,12S,18S,21S,24S,27S)-21-benzyl-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0018 | uM |
| (3S)-3-[3-(oxetan-3-yloxy)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0025 | uM |
| (3S)-3-[3-(3,5-dimethylpyrazol-1-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400447: Binding affinity to human integrin alphaVbeta8 after 2 hrs by liquid scintillation counting | kd | 0.0027 | uM |
| (3S)-3-(3-bromophenyl)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0032 | uM |
| 2-[(3R,9S,12S,18S,21S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-21-(1H-indol-3-ylmethyl)-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0037 | uM |
| (3S)-3-[3-(5-methyl-1H-pyrazol-3-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0040 | uM |
| 2-[(3R,9S,12S,15S,18S,21S,24S,27S)-21-benzyl-18-[3-(diaminomethylideneamino)propyl]-15-[(1R)-1-hydroxyethyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0043 | uM |
| 2-[(3R,9S,12S,18S,21S,27S)-18-[3-(diaminomethylideneamino)propyl]-9,21-bis(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0045 | uM |
| (3S)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]-3-[3-(triazol-1-yl)phenyl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0050 | uM |
| 2-[(3R,9S,12S,15S,18S,21S,24S,27S)-21-benzyl-18-[3-(diaminomethylideneamino)propyl]-15-(hydroxymethyl)-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0058 | uM |
| (3S)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]-3-[3-(1,2,4-triazol-4-yl)phenyl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0063 | uM |
| (3S)-3-[3-[(3S)-oxolan-3-yl]oxyphenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0063 | uM |
| (3S)-3-[3-(oxan-4-yloxy)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0063 | uM |
| (3S)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]-3-[3-(1,2,4-triazol-1-yl)phenyl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0063 | uM |
| (3S)-3-(3-cyclopropylphenyl)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0063 | uM |
| 2-[(3R,9S,12S,18S,21S,24S,27S)-21-(carboxymethyl)-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0063 | uM |
| 2-[(3R,9S,12S,18S,21S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-21-phenyl-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0064 | uM |
| 2-[(3R,9S,12S,18S,21S,24S,27S)-21-(4-aminobutyl)-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0073 | uM |
| (3S)-3-[3-(oxolan-3-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0079 | uM |
| (3S)-3-[3-(1,4-dimethylpyrazol-5-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0079 | uM |
| (3S)-3-[3-(1,4-dimethylimidazol-2-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0079 | uM |
| 2-[(3S,6S,12S,15S,21S,24R)-21-(4-acetamidobutyl)-12-[3-(diaminomethylideneamino)propyl]-22-methyl-3,15-bis(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1,4,7,10,13,16,19,22-octazabicyclo[22.3.0]heptacosan-6-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0080 | uM |
| 2-[(3R,9S,12S,18S,21S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-21,24-dimethyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0081 | uM |
| 2-[(3R,6S,9S,15S,18S,21S,24S)-3-benzyl-15-[3-(diaminomethylideneamino)propyl]-4,21-dimethyl-6,18-bis(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1,4,7,10,13,16,19,22-octazabicyclo[22.3.0]heptacosan-9-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0094 | uM |
| (3S)-3-[3-(3,5-dimethylpyrazol-1-yl)-5-morpholin-4-ylphenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0100 | uM |
| (3S)-3-[3-(2,5-dimethyl-1H-imidazol-4-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0100 | uM |
| (3S)-3-[3-[(3R)-oxolan-3-yl]oxyphenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0100 | uM |
| (3S)-3-[3-(3-methyl-1,2,4-triazol-4-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0100 | uM |
| (3S)-3-[3-(3,5-dimethyl-1,2,4-triazol-1-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0100 | uM |
| (3S)-3-(3-pyrazol-1-ylphenyl)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0100 | uM |
| (3S)-3-[3-(5-methylpyrazol-1-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0100 | uM |
| (3S)-3-[3-(5-methylpyrazol-1-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid;hydrochloride | 1577143: Inhibition of integrin alphavbeta8 (unknown origin) expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP1 (242 to 252 amino acids) incubated for 30 mins by fluorescent probe BCECF-AM based fluorescence assay | ic50 | 0.0100 | uM |
| 2-[(3R,9S,12S,15S,18S,24S,27S,30S)-9-benzyl-24-[3-(diaminomethylideneamino)propyl]-12,27-dimethyl-15-(2-methylpropyl)-2,8,11,14,17,20,23,26,29-nonaoxo-1,7,10,13,16,19,22,25,28-nonazatricyclo[28.3.0.03,7]tritriacontan-18-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0104 | uM |
| 2-[(3R,9S,12S,18S,21S,27S)-29-acetamido-18-[3-(diaminomethylideneamino)propyl]-9,21-bis(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0105 | uM |
| 2-[(3R,6S,9S,15S,18S,21S,24S)-3-(4-aminobutyl)-15-[3-(diaminomethylideneamino)propyl]-4,21-dimethyl-6,18-bis(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1,4,7,10,13,16,19,22-octazabicyclo[22.3.0]heptacosan-9-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0121 | uM |
| 2-[(3R,9S,12S,18S,21S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-24-(hydroxymethyl)-9,21-bis(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0125 | uM |
| 2-[(3R,9S,12S,18S,21S,27S)-18-[3-(diaminomethylideneamino)propyl]-29-(hexylamino)-9,21-bis(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0128 | uM |
| 2-[(3R,6S,9S,15S,18S,21S,24S)-15-[3-(diaminomethylideneamino)propyl]-4,21-dimethyl-3,6,18-tris(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1,4,7,10,13,16,19,22-octazabicyclo[22.3.0]heptacosan-9-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0150 | uM |
| (3S)-3-(3-morpholin-4-ylphenyl)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0158 | uM |
| (3S)-3-(3-cyclopropyl-5-morpholin-4-ylphenyl)-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid | 1400433: Antagonist activity at human integrin alphaVbeta8 expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP after 30 mins by BCECF-AM-fluorescence based assay | ic50 | 0.0158 | uM |
| (3S)-3-[3-(3,5-dimethylpyrazol-1-yl)phenyl]-4-[(3R)-3-[2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl]pyrrolidin-1-yl]butanoic acid;hydrochloride | 1577143: Inhibition of integrin alphavbeta8 (unknown origin) expressed in human K562 cells assessed as reduction in cell adhesion to GST-LAP1 (242 to 252 amino acids) incubated for 30 mins by fluorescent probe BCECF-AM based fluorescence assay | ic50 | 0.0158 | uM |
| 2-[(3R,9S,12S,18S,24S,27S)-18-[3-(diaminomethylideneamino)propyl]-24-methyl-9-(2-methylpropyl)-2,8,11,14,17,20,23,26-octaoxo-1,7,10,13,16,19,22,25-octazatricyclo[25.3.0.03,7]triacontan-12-yl]acetic acid | 1614469: Inhibition of LAP binding to human integrin alphavbeta8 receptor after 1 hr by solid-phase binding assay | ic50 | 0.0159 | uM |
CTD chemical–gene interactions
72 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects expression, decreases expression | 5 |
| Air Pollutants | increases expression, affects cotreatment, decreases expression, increases abundance | 3 |
| Asbestos, Serpentine | decreases methylation, increases expression | 3 |
| Particulate Matter | increases abundance, decreases expression | 3 |
| perfluorooctane sulfonic acid | decreases expression | 2 |
| Benzo(a)pyrene | increases expression | 2 |
| Copper | affects binding, decreases expression | 2 |
| Estradiol | affects expression, affects cotreatment, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| Cadmium Chloride | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| peracetylated N-azidoacetylmannosamine | decreases expression | 1 |
| TL8-506 | increases expression, affects cotreatment | 1 |
| tungsten carbide | affects cotreatment, decreases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| alpha-pinene | decreases expression, increases abundance, affects cotreatment | 1 |
| bisphenol A | decreases expression | 1 |
| trichostatin A | decreases expression, increases expression | 1 |
| 2-butenal | affects cotreatment, decreases expression | 1 |
| 2,4,5,2’,4’,5’-hexachlorobiphenyl | affects expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| nickel chloride | increases expression | 1 |
| 3,4,5,3’,4’-pentachlorobiphenyl | increases expression | 1 |
| perfluorooctanoic acid | affects expression, decreases reaction | 1 |
| 3,4,3’,4’-tetrachlorobiphenyl | affects expression | 1 |
| rutecarpine | increases expression | 1 |
| methacrylaldehyde | affects cotreatment, decreases expression, increases abundance | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, increases expression, decreases reaction | 1 |
ChEMBL screening assays
33 unique, capped per target: 32 binding, 1 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3368776 | Binding | Antagonist activity at human recombinant alphavbeta8 integrin receptor expressed in HEK293 cells after 4 hrs using p-nitrophenyl phosphate by colorimetry | Strategies to inhibit tumor associated integrin receptors: rationale for dual and multi-antagonists. — J Med Chem |
| CHEMBL4709542 | ADMET | Inhibition of integrin alphavbeta8 (unknown origin) by fluorescence polarization assay | Discovery of the first potent and selective αβ integrin inhibitor based on an amide-containing core. — Eur J Med Chem |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D9HI | Ubigene HEK293 ITGB8 KO | Transformed cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.