ITIH2
gene geneOn this page
Also known as H2P
Summary
ITIH2 (inter-alpha-trypsin inhibitor heavy chain 2, HGNC:6167) is a protein-coding gene on chromosome 10p14, encoding Inter-alpha-trypsin inhibitor heavy chain H2 (P19823). May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological p….
The inter-alpha-trypsin inhibitors (ITI) are a family of structurally related plasma serine protease inhibitors involved in extracellular matrix stabilization and in prevention of tumor metastasis. The ITI family contains multiple proteins made up of a light chain (see MIM 176870) and a variable number of heavy chains (Salier et al., 1987 [PubMed 2446322]; Himmelfarb et al., 2004 [PubMed 14744536]).
Source: NCBI Gene 3698 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 156 total
- Druggable target: yes
- MANE Select transcript:
NM_002216
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6167 |
| Approved symbol | ITIH2 |
| Name | inter-alpha-trypsin inhibitor heavy chain 2 |
| Location | 10p14 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | H2P |
| Ensembl gene | ENSG00000151655 |
| Ensembl biotype | protein_coding |
| OMIM | 146640 |
| Entrez | 3698 |
Gene structure
Transcript identifiers
Ensembl transcripts: 24 — 21 protein_coding, 2 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000358415, ENST00000379587, ENST00000429820, ENST00000473227, ENST00000477751, ENST00000480387, ENST00000899752, ENST00000899753, ENST00000899754, ENST00000899755, ENST00000899756, ENST00000899757, ENST00000899758, ENST00000899759, ENST00000899760, ENST00000899761, ENST00000899762, ENST00000899763, ENST00000899764, ENST00000899765, ENST00000899766, ENST00000899767, ENST00000899768, ENST00000899769
RefSeq mRNA: 1 — MANE Select: NM_002216
NM_002216
CCDS: CCDS31141
Canonical transcript exons
ENST00000358415 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001000896 | 7720856 | 7720963 |
| ENSE00001604757 | 7738621 | 7738758 |
| ENSE00001612470 | 7744791 | 7744963 |
| ENSE00001621529 | 7727703 | 7727828 |
| ENSE00001637435 | 7746593 | 7746704 |
| ENSE00001649888 | 7744082 | 7744280 |
| ENSE00001666876 | 7743146 | 7743259 |
| ENSE00001709507 | 7732338 | 7732477 |
| ENSE00001719911 | 7726950 | 7727118 |
| ENSE00001752012 | 7749187 | 7749520 |
| ENSE00001753218 | 7729952 | 7730133 |
| ENSE00001773649 | 7723451 | 7723567 |
| ENSE00001778763 | 7734922 | 7735091 |
| ENSE00001811236 | 7703316 | 7703518 |
| ENSE00002160656 | 7721649 | 7721777 |
| ENSE00003548900 | 7731811 | 7731996 |
| ENSE00003565647 | 7707201 | 7707233 |
| ENSE00003640166 | 7713181 | 7713285 |
| ENSE00003646292 | 7709022 | 7709191 |
| ENSE00003655024 | 7717626 | 7717788 |
| ENSE00003673472 | 7705108 | 7705182 |
Expression profiles
Bgee: expression breadth ubiquitous, 166 present calls, max score 99.35.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 7.5258 / max 2078.6055, expressed in 142 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 103752 | 4.0351 | 81 |
| 103753 | 3.0547 | 111 |
| 103754 | 0.2158 | 21 |
| 103751 | 0.0707 | 12 |
| 103749 | 0.0563 | 10 |
| 103750 | 0.0507 | 13 |
| 103757 | 0.0292 | 10 |
| 103748 | 0.0068 | 5 |
| 103756 | 0.0065 | 5 |
Top tissues by expression
281 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| liver | UBERON:0002107 | 99.35 | gold quality |
| right lobe of liver | UBERON:0001114 | 98.92 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.54 | gold quality |
| olfactory bulb | UBERON:0002264 | 79.66 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 79.03 | gold quality |
| type B pancreatic cell | CL:0000169 | 76.76 | gold quality |
| adrenal tissue | UBERON:0018303 | 74.28 | gold quality |
| diaphragm | UBERON:0001103 | 70.27 | gold quality |
| tibialis anterior | UBERON:0001385 | 69.82 | silver quality |
| cerebellar hemisphere | UBERON:0002245 | 66.32 | gold quality |
| putamen | UBERON:0001874 | 66.24 | gold quality |
| cerebellar cortex | UBERON:0002129 | 66.20 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 65.54 | gold quality |
| cerebellum | UBERON:0002037 | 64.10 | gold quality |
| prefrontal cortex | UBERON:0000451 | 63.87 | gold quality |
| pancreatic ductal cell | CL:0002079 | 63.74 | silver quality |
| caudate nucleus | UBERON:0001873 | 63.20 | gold quality |
| colonic epithelium | UBERON:0000397 | 62.97 | silver quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 62.56 | gold quality |
| hypothalamus | UBERON:0001898 | 62.52 | gold quality |
| spinal cord | UBERON:0002240 | 61.99 | gold quality |
| islet of Langerhans | UBERON:0000006 | 61.65 | gold quality |
| substantia nigra | UBERON:0002038 | 61.63 | gold quality |
| gastrocnemius | UBERON:0001388 | 60.89 | gold quality |
| muscle of leg | UBERON:0001383 | 60.60 | gold quality |
| midbrain | UBERON:0001891 | 60.24 | gold quality |
| adenohypophysis | UBERON:0002196 | 60.00 | gold quality |
| corpus callosum | UBERON:0002336 | 59.51 | gold quality |
| nucleus accumbens | UBERON:0001882 | 59.39 | gold quality |
| muscle organ | UBERON:0001630 | 59.23 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-130473 | yes | 2553.95 |
| E-MTAB-7407 | yes | 1023.71 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
22 targeting ITIH2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-944 | 99.82 | 70.85 | 3042 |
| HSA-MIR-6739-5P | 99.80 | 67.87 | 2806 |
| HSA-MIR-548AJ-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548F-5P | 99.78 | 71.02 | 3093 |
| HSA-MIR-548G-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548X-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-6733-5P | 99.74 | 67.94 | 2759 |
| HSA-MIR-33A-3P | 99.70 | 70.27 | 3362 |
| HSA-MIR-497-3P | 99.61 | 69.71 | 1990 |
| HSA-MIR-3153 | 99.55 | 67.59 | 2337 |
| HSA-MIR-3171 | 99.49 | 69.06 | 776 |
| HSA-MIR-6853-3P | 99.36 | 70.79 | 1558 |
| HSA-MIR-7151-3P | 99.04 | 69.72 | 2370 |
| HSA-MIR-29B-1-5P | 98.86 | 68.35 | 1364 |
| HSA-MIR-6715B-3P | 98.80 | 68.07 | 1204 |
| HSA-MIR-6776-3P | 98.38 | 66.34 | 655 |
| HSA-MIR-4438 | 97.96 | 63.70 | 947 |
| HSA-MIR-3620-3P | 97.78 | 64.88 | 772 |
| HSA-MIR-6783-5P | 97.67 | 67.21 | 1528 |
| HSA-MIR-4671-5P | 97.10 | 65.70 | 93 |
Literature-anchored findings (GeneRIF, showing 8)
- TSG-6 acts as cofactor and catalyst in the production of IalphaI heavy chain x hyaluronan complexes (PMID:15840581)
- Leukocytes infiltrated to the synovium were strongly positive for hyaluronic acid, SHAP, and CD44 on their surfaces, suggesting a role for the adhesion-enhancing effect of SHAP in inflammation. (PMID:16702221)
- Increased levels of SHAP-HA complex in sera are possible predictive markers for cervical ripening in premature labor. (PMID:18382897)
- serum-derived hyaluronan-associated protein-hyaluronan complex has a role in progression of ovarian cancer (PMID:18425383)
- It forms complex with hyaluronan and the comlex is a functional molecule involved in inflammation. (PMID:20297716)
- Human inter-alpha-inhibitor is a substrate for factor XIIIa and tissue transglutaminase. (PMID:21939789)
- Data suggest that Mg2+ or Mn2+ (but not Ca2+) induce a conformational change in inter-alpha-inhibitor (ITIH1 and ITIH2) and a bikunin/chondroitin sulfate-dependent increase in thermodynamic stability; bikunin binds adjacent to the two heavy chains. (PMID:26728454)
- Both IalphaI and the HC-hyaluronan complex are substrates for the extracellular matrix proteases ADAMTS-5 and matrix metalloprotease (MMP) -3, -7, and -13. (PMID:31484722)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | itih2 | ENSDARG00000045516 |
| mus_musculus | Itih2 | ENSMUSG00000037254 |
| rattus_norvegicus | Itih2 | ENSRNOG00000001066 |
Paralogs (11): ITIH4 (ENSG00000055955), ITIH1 (ENSG00000055957), ITIH6 (ENSG00000102313), PARP4 (ENSG00000102699), VWA5A (ENSG00000110002), ITIH5 (ENSG00000123243), VWA5B2 (ENSG00000145198), VWA5B1 (ENSG00000158816), ITIH3 (ENSG00000162267), VWA3B (ENSG00000168658), VWA3A (ENSG00000175267)
Protein
Protein identifiers
Inter-alpha-trypsin inhibitor heavy chain H2 — P19823 (reviewed: P19823)
Alternative names: Inter-alpha-trypsin inhibitor complex component II, Serum-derived hyaluronan-associated protein
All UniProt accessions (3): P19823, Q5T985, Q5T987
UniProt curated annotations — full annotation on UniProt →
Function. May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.
Subunit / interactions. I-alpha-I plasma protease inhibitors are assembled from one or two heavy chains (HC) and one light chain, bikunin. Inter-alpha-inhibitor (I-alpha-I) is composed of ITIH1/HC1, ITIH2/HC2 and bikunin.
Subcellular location. Secreted.
Tissue specificity. Plasma.
Post-translational modifications. Heavy chains are linked to bikunin via chondroitin 4-sulfate esterified to the alpha-carboxyl of the C-terminal aspartate after propeptide cleavage. N- and O-glycosylated. O-glycosylated with core 1 or possibly core 8 glycans. Phosphorylated by FAM20C in the extracellular medium.
Similarity. Belongs to the ITIH family.
RefSeq proteins (1): NP_002207* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002035 | VWF_A | Domain |
| IPR010600 | ITI_HC_C | Domain |
| IPR013694 | VIT | Domain |
| IPR036465 | vWFA_dom_sf | Homologous_superfamily |
| IPR050934 | ITIH | Family |
Pfam: PF00092, PF06668, PF08487
UniProt features (28 total): modified residue 6, glycosylation site 6, sequence conflict 4, sequence variant 3, propeptide 2, disulfide bond 2, domain 2, signal peptide 1, chain 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P19823-F1 | 82.85 | 0.57 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (6): 466, 702, 886, 60, 282, 283
Disulfide bonds (2): 261–264, 650–651
Glycosylation sites (6): 118, 445, 666, 673, 675, 691
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-381426 | Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
| R-HSA-8957275 | Post-translational protein phosphorylation |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-597592 | Post-translational protein modification |
MSigDB gene sets: 96 (showing top):
RIZKI_TUMOR_INVASIVENESS_3D_DN, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_HYALURONAN_METABOLIC_PROCESS, HSIAO_LIVER_SPECIFIC_GENES, GOBP_AMINOGLYCAN_METABOLIC_PROCESS, GOTZMANN_EPITHELIAL_TO_MESENCHYMAL_TRANSITION_DN, TSENG_IRS1_TARGETS_DN, GOMF_GLYCOSAMINOGLYCAN_BINDING, MODULE_88, AACTTT_UNKNOWN, MODULE_112, ZHONG_SECRETOME_OF_LUNG_CANCER_AND_MACROPHAGE, ZHONG_SECRETOME_OF_LUNG_CANCER_AND_FIBROBLAST, GOCC_BLOOD_MICROPARTICLE, GOCC_ENDOPLASMIC_RETICULUM_LUMEN
GO Biological Process (1): hyaluronan metabolic process (GO:0030212)
GO Molecular Function (5): endopeptidase inhibitor activity (GO:0004866), serine-type endopeptidase inhibitor activity (GO:0004867), hyaluronic acid binding (GO:0005540), protein binding (GO:0005515), peptidase inhibitor activity (GO:0030414)
GO Cellular Component (5): extracellular region (GO:0005576), endoplasmic reticulum lumen (GO:0005788), extracellular matrix (GO:0031012), extracellular exosome (GO:0070062), blood microparticle (GO:0072562)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Metabolism of proteins | 2 |
| Post-translational protein modification | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| glycosaminoglycan metabolic process | 1 |
| endopeptidase activity | 1 |
| peptidase inhibitor activity | 1 |
| endopeptidase regulator activity | 1 |
| serine-type endopeptidase activity | 1 |
| endopeptidase inhibitor activity | 1 |
| carboxylic acid binding | 1 |
| binding | 1 |
| enzyme inhibitor activity | 1 |
| peptidase activity | 1 |
| peptidase regulator activity | 1 |
| endoplasmic reticulum | 1 |
| intracellular organelle lumen | 1 |
| external encapsulating structure | 1 |
| extracellular vesicle | 1 |
| extracellular region | 1 |
Protein interactions and networks
STRING
1886 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ITIH2 | AMBP | P00977 | 932 |
| ITIH2 | ITIH1 | P19827 | 763 |
| ITIH2 | AHSG | P02765 | 637 |
| ITIH2 | TF | P02787 | 615 |
| ITIH2 | CP | P00450 | 612 |
| ITIH2 | ITIH3 | Q06033 | 609 |
| ITIH2 | A2M | P01023 | 590 |
| ITIH2 | FGA | P02671 | 590 |
| ITIH2 | C3 | P01024 | 585 |
| ITIH2 | APOA1 | P02647 | 583 |
| ITIH2 | SERPINA1 | P01009 | 580 |
| ITIH2 | APOA4 | P06727 | 568 |
| ITIH2 | C4A | P01028 | 566 |
| ITIH2 | APOB | P04114 | 561 |
| ITIH2 | MARCHF2 | Q9P0N8 | 558 |
IntAct
103 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | HAX1 | psi-mi:“MI:0914”(association) | 0.610 |
| LIPG | NRP1 | psi-mi:“MI:0914”(association) | 0.530 |
| ANGPTL4 | NMT2 | psi-mi:“MI:0914”(association) | 0.530 |
| FGF10 | ITIH2 | psi-mi:“MI:0914”(association) | 0.530 |
| ZG16B | ITIH2 | psi-mi:“MI:0914”(association) | 0.530 |
| EGFR | NDUFA4 | psi-mi:“MI:0914”(association) | 0.530 |
| KLRG2 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.530 |
| ERP44 | MEX3A | psi-mi:“MI:0914”(association) | 0.530 |
| CMA1 | MANBA | psi-mi:“MI:0914”(association) | 0.530 |
| LRRC4C | DVL2 | psi-mi:“MI:0914”(association) | 0.530 |
| PDGFRL | ANKRD28 | psi-mi:“MI:0914”(association) | 0.530 |
| TNF | B4GALT5 | psi-mi:“MI:0914”(association) | 0.530 |
| MMP10 | TIMP1 | psi-mi:“MI:0914”(association) | 0.530 |
| B4GALT4 | HSPA5 | psi-mi:“MI:0914”(association) | 0.530 |
| ELANE | ITIH2 | psi-mi:“MI:0914”(association) | 0.530 |
| SPSB2 | ARHGEF10 | psi-mi:“MI:0914”(association) | 0.530 |
| ITIH2 | FAM20C | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| H3C1 | SMCHD1 | psi-mi:“MI:2364”(proximity) | 0.410 |
| CD5L | psi-mi:“MI:0915”(physical association) | 0.400 | |
| LECT2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| MAPT | LANCL1 | psi-mi:“MI:0914”(association) | 0.350 |
| LRRK2 | psi-mi:“MI:0914”(association) | 0.350 | |
| DKKL1 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (106): ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS)
ESM2 similar proteins: A0A481NSZ4, A0JPN3, A2BGH0, A6QP57, D4A5U3, G3HIK4, O02668, O76879, P11597, P17213, P17453, P17454, P18428, P19823, P19827, P22687, P47896, P55058, P55065, P59826, P59827, P97278, Q05701, Q05704, Q08188, Q08189, Q0VCM5, Q10011, Q24764, Q28739, Q29052, Q2TBI0, Q61114, Q61702, Q61703, Q61805, Q63313, Q67E05, Q6AXU0, Q80ZU7
Diamond homologs: A2VE29, A6X935, O02668, P19823, P19827, P56652, P79263, P97278, P97279, P97280, Q06033, Q0VCM5, Q14624, Q29052, Q3T052, Q5RB37, Q5RER0, Q61702, Q61703, Q61704, Q63416, Q6UXX5, Q86UX2, Q8BJD1, Q9GLY5, P56651, A1A5Q7, Q5RJF7, A6NCI4, Q8CFG5, Q8IZS8, Q9Z1L5, Q3UVV9, A8XP97, P34374, Q9ZQ46
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 128 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Glycosaminoglycan metabolism | 5 | 13.1× | 5e-03 |
| Post-translational protein phosphorylation | 8 | 9.5× | 9e-04 |
| Metabolism of carbohydrates and carbohydrate derivatives | 6 | 8.6× | 6e-03 |
| Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) | 8 | 8.2× | 1e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
156 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 143 |
| Likely benign | 3 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3555 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:7703516:GAA:G | donor_gain | 1.0000 |
| 10:7704890:G:GT | donor_gain | 1.0000 |
| 10:7709192:G:GG | donor_gain | 1.0000 |
| 10:7717786:GAG:G | donor_gain | 1.0000 |
| 10:7717789:GT:G | donor_loss | 1.0000 |
| 10:7717790:T:A | donor_loss | 1.0000 |
| 10:7721774:GGAG:G | donor_gain | 1.0000 |
| 10:7721775:GAG:G | donor_gain | 1.0000 |
| 10:7721775:GAGG:G | donor_gain | 1.0000 |
| 10:7721775:GAGGT:G | donor_loss | 1.0000 |
| 10:7721776:AGGTG:A | donor_loss | 1.0000 |
| 10:7721777:GGTG:G | donor_loss | 1.0000 |
| 10:7721778:G:A | donor_loss | 1.0000 |
| 10:7721779:T:A | donor_loss | 1.0000 |
| 10:7723445:TTTCA:T | acceptor_loss | 1.0000 |
| 10:7723446:TTCA:T | acceptor_loss | 1.0000 |
| 10:7723447:TCA:T | acceptor_loss | 1.0000 |
| 10:7723448:CA:C | acceptor_loss | 1.0000 |
| 10:7723449:A:AG | acceptor_gain | 1.0000 |
| 10:7723449:A:G | acceptor_loss | 1.0000 |
| 10:7723450:G:GG | acceptor_gain | 1.0000 |
| 10:7723450:GGT:G | acceptor_gain | 1.0000 |
| 10:7723564:ACAA:A | donor_gain | 1.0000 |
| 10:7723565:CAA:C | donor_gain | 1.0000 |
| 10:7723566:AAG:A | donor_loss | 1.0000 |
| 10:7723568:G:GG | donor_gain | 1.0000 |
| 10:7726940:A:AG | acceptor_gain | 1.0000 |
| 10:7726940:ATT:A | acceptor_gain | 1.0000 |
| 10:7726941:T:G | acceptor_gain | 1.0000 |
| 10:7726942:T:A | acceptor_gain | 1.0000 |
AlphaMissense
6261 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:7723535:A:C | S318R | 0.999 |
| 10:7723536:G:T | S318I | 0.999 |
| 10:7723537:T:A | S318R | 0.999 |
| 10:7723537:T:G | S318R | 0.999 |
| 10:7727016:T:C | F351L | 0.999 |
| 10:7727018:C:A | F351L | 0.999 |
| 10:7727018:C:G | F351L | 0.999 |
| 10:7723524:T:A | V314D | 0.998 |
| 10:7723536:G:A | S318N | 0.998 |
| 10:7726959:G:C | A332P | 0.998 |
| 10:7727082:G:C | A373P | 0.998 |
| 10:7727811:A:T | D421V | 0.998 |
| 10:7727814:G:A | G422E | 0.998 |
| 10:7723521:T:C | F313S | 0.997 |
| 10:7723529:G:C | D316H | 0.997 |
| 10:7723530:A:C | D316A | 0.997 |
| 10:7723530:A:T | D316V | 0.997 |
| 10:7723531:T:A | D316E | 0.997 |
| 10:7723531:T:G | D316E | 0.997 |
| 10:7723541:T:C | S320P | 0.997 |
| 10:7726984:T:C | L340P | 0.997 |
| 10:7727706:C:T | T386I | 0.997 |
| 10:7727724:T:C | L392P | 0.997 |
| 10:7727807:T:C | S420P | 0.997 |
| 10:7727808:C:T | S420F | 0.997 |
| 10:7727812:T:A | D421E | 0.997 |
| 10:7727812:T:G | D421E | 0.997 |
| 10:7727814:G:T | G422V | 0.997 |
| 10:7730020:A:C | S450R | 0.997 |
| 10:7730022:T:A | S450R | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000061762 (10:7702401 T>A), RS1000098543 (10:7741635 C>G,T), RS1000176705 (10:7719455 T>C), RS1000206468 (10:7719738 A>G,T), RS1000230112 (10:7723449 A>C,G,T), RS1000284414 (10:7734902 C>T), RS1000442019 (10:7709411 G>C), RS1000583749 (10:7723809 C>G), RS1000617907 (10:7731301 C>A), RS1000625357 (10:7718853 C>T), RS1000656354 (10:7703862 G>C), RS1000714415 (10:7714394 G>A,C), RS1000788423 (10:7724718 A>G), RS1000846752 (10:7709437 C>T), RS1000921982 (10:7730614 G>A)
Disease associations
OMIM: gene MIM:146640 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001330_7 | Ovarian reserve | 2.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004770 | ovarian reserve |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4295727 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
43 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cyclosporine | decreases expression | 3 |
| bisphenol A | affects expression, affects cotreatment, increases abundance | 2 |
| sodium arsenite | affects methylation, decreases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| Valproic Acid | affects expression, decreases expression | 2 |
| Aflatoxin B1 | affects methylation, decreases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| ginger extract | affects cotreatment, affects expression, increases abundance | 1 |
| propionaldehyde | decreases expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| manganese chloride | affects binding, increases reaction | 1 |
| nivalenol | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| abrine | decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Olanzapine | affects phosphorylation | 1 |
| Acetaminophen | decreases expression | 1 |
| Amiodarone | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cadmium | affects binding | 1 |
| Caffeine | increases phosphorylation | 1 |
| Calcium | affects binding, increases reaction | 1 |
| Calcium Chloride | increases reaction, affects binding | 1 |
| Citrulline | increases expression | 1 |
| Copper | affects binding | 1 |
| Diethylnitrosamine | decreases expression | 1 |
| Magnesium | affects binding, increases reaction | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4118706 | Binding | Binding affinity to ITIH2 in human NCI-H23 cells at 1 uM by mass spectrometry based pull down assay | Studies of TAK1-centered polypharmacology with novel covalent TAK1 inhibitors. — Bioorg Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.