ITIH5
gene geneOn this page
Also known as MGC10848
Summary
ITIH5 (inter-alpha-trypsin inhibitor heavy chain 5, HGNC:21449) is a protein-coding gene on chromosome 10p14, encoding Inter-alpha-trypsin inhibitor heavy chain H5 (Q86UX2). May act as a tumor suppressor.
This gene encodes a heavy chain component of one of the inter-alpha-trypsin inhibitor (ITI) family members. ITI proteins are involved in extracellular matrix stabilization and in the prevention of tumor metastasis. They are also structurally related plasma serine protease inhibitors and are composed of a light chain and varying numbers of heavy chains. This family member is thought to function as a tumor suppressor in breast and thyroid cancers. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 80760 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 188 total
- MANE Select transcript:
NM_030569
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:21449 |
| Approved symbol | ITIH5 |
| Name | inter-alpha-trypsin inhibitor heavy chain 5 |
| Location | 10p14 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC10848 |
| Ensembl gene | ENSG00000123243 |
| Ensembl biotype | protein_coding |
| OMIM | 609783 |
| Entrez | 80760 |
Gene structure
Transcript identifiers
Ensembl transcripts: 20 — 14 protein_coding, 3 retained_intron, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000397145, ENST00000397146, ENST00000434980, ENST00000461751, ENST00000468389, ENST00000473591, ENST00000476417, ENST00000492668, ENST00000613909, ENST00000884048, ENST00000884049, ENST00000884050, ENST00000884051, ENST00000884052, ENST00000884053, ENST00000884054, ENST00000884055, ENST00000884056, ENST00000945639, ENST00000945640
RefSeq mRNA: 3 — MANE Select: NM_030569
NM_001001851, NM_030569, NM_032817
CCDS: CCDS31139, CCDS31140
Canonical transcript exons
ENST00000397146 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001527484 | 7559270 | 7563384 |
| ENSE00003495625 | 7585901 | 7586069 |
| ENSE00003547240 | 7576453 | 7577012 |
| ENSE00003554501 | 7615982 | 7616098 |
| ENSE00003558936 | 7579755 | 7580064 |
| ENSE00003559848 | 7573142 | 7573195 |
| ENSE00003569893 | 7617113 | 7617282 |
| ENSE00003577280 | 7640754 | 7640855 |
| ENSE00003609990 | 7637228 | 7637478 |
| ENSE00003660421 | 7641927 | 7642090 |
| ENSE00003689754 | 7655631 | 7655675 |
| ENSE00003724391 | 7666803 | 7666966 |
| ENSE00003746621 | 7569668 | 7569784 |
| ENSE00003757037 | 7566030 | 7566407 |
Expression profiles
Bgee: expression breadth ubiquitous, 260 present calls, max score 96.80.
FANTOM5 (CAGE): breadth broad, TPM avg 10.9744 / max 1053.5131, expressed in 495 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 108194 | 7.1998 | 434 |
| 108193 | 3.6821 | 290 |
| 108190 | 0.0925 | 34 |
Top tissues by expression
281 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| subcutaneous adipose tissue | UBERON:0002190 | 96.80 | gold quality |
| placenta | UBERON:0001987 | 96.35 | gold quality |
| adipose tissue | UBERON:0001013 | 96.27 | gold quality |
| renal glomerulus | UBERON:0000074 | 95.48 | gold quality |
| connective tissue | UBERON:0002384 | 95.31 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 95.16 | gold quality |
| mucosa of stomach | UBERON:0001199 | 94.91 | gold quality |
| skin of hip | UBERON:0001554 | 94.50 | gold quality |
| popliteal artery | UBERON:0002250 | 94.39 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 94.39 | gold quality |
| tibial artery | UBERON:0007610 | 94.37 | gold quality |
| endothelial cell | CL:0000115 | 94.02 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 93.94 | gold quality |
| saphenous vein | UBERON:0007318 | 93.83 | gold quality |
| colonic epithelium | UBERON:0000397 | 93.74 | gold quality |
| omental fat pad | UBERON:0010414 | 93.71 | gold quality |
| peritoneum | UBERON:0002358 | 93.64 | gold quality |
| urinary bladder | UBERON:0001255 | 92.73 | gold quality |
| gall bladder | UBERON:0002110 | 91.81 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 91.77 | gold quality |
| blood vessel layer | UBERON:0004797 | 91.76 | gold quality |
| aorta | UBERON:0000947 | 91.47 | gold quality |
| cartilage tissue | UBERON:0002418 | 90.73 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 90.52 | gold quality |
| right coronary artery | UBERON:0001625 | 90.41 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 90.00 | gold quality |
| secondary oocyte | CL:0000655 | 89.98 | gold quality |
| mammary gland | UBERON:0001911 | 89.95 | gold quality |
| synovial joint | UBERON:0002217 | 89.41 | gold quality |
| vena cava | UBERON:0004087 | 89.40 | gold quality |
Single-cell (SCXA)
Detected in 10 experiment(s), a significant marker in 8.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-114530 | yes | 440.81 |
| E-MTAB-6701 | yes | 123.51 |
| E-GEOD-135922 | yes | 27.38 |
| E-HCAD-35 | yes | 17.69 |
| E-MTAB-6678 | yes | 17.52 |
| E-ANND-3 | yes | 12.74 |
| E-CURD-114 | yes | 9.86 |
| E-GEOD-137537 | yes | 7.53 |
| E-HCAD-30 | no | 169.51 |
| E-MTAB-10137 | no | 4.76 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
114 targeting ITIH5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
Literature-anchored findings (GeneRIF, showing 23)
- expression is consistantly lost or strongly downregulated in invasive ductal carcinoma; proposed that loss of ITIH5 expression may be involved in breast cancer development (PMID:14744536)
- Promoter methylation-mediated loss of ITIH5 expression is associated with unfavourable outcome in breast cancer patients. (PMID:17653090)
- Both ITIH5 protein expression and ITIH5 promoter methylation may serve as prognostic biomarkers, thereby helping improve clinical patient outcome. (PMID:18810445)
- ITIH-5 is highly expressed in sc adipose tissue, increased in obesity, down regulated after weight loss, and associated with measures of body size and metabolism. (PMID:21852814)
- ITIH5 gene expression is regulated both by obesity and by the region between visceral and subcutaneous adipose tissue. (PMID:22616691)
- Tumor-specific methylation of the three-gene panel (ITIH5, DKK3, and RASSF1A) might be a valuable biomarker for the early detection of breast cancer. (PMID:23320751)
- provide evidence that down-regulation of ITIH5 by aberrant DNA hypermethylation may provoke invasive phenotypes in human bladder cancer (PMID:24265292)
- ITIH5 expression is decreased in gastric cancer and that low expression of this protein is associated with poor clinical outcome. (PMID:24913813)
- ITIH5 is a novel putative tumor suppressor gene in colon cancer with a potential impact in the CIMP-related pathway. (PMID:25093535)
- Hence, we can strengthen the presumption that ITIH5 may constitute a novel regulatory molecule of the human skin that could play an important role in in fl ammation via its interaction with hyaluronic acid. (PMID:25809190)
- ITIH5 may be a novel putative tumor suppressor gene in NSCLC with a potential molecular significance in the squamoid ADC subtype and further clinical impact for risk stratification of adenocarcinoma patients. (PMID:26252352)
- The current study describes a novel mechanism linking the TSG-6 transfer of the newly described HC5 to the HA-dependent control of cell phenotype. The interaction of HC5 with cell surface HA was essential for TGFbeta1-dependent differentiation of fibroblasts to myofibroblasts, highlighting its importance as a novel potential therapeutic target. (PMID:27143355)
- This is the first study so far showing a putative tumor suppressive function of ITIH5 in cervical carcinogenesis. (PMID:28059468)
- Results provide evidence that ITIH5 triggers a reprogramming of breast cancer cells through global epigenetic changes effecting DAPK1. ITIH5 may represent an ECM modulator in epithelial breast tissue mediating suppression of tumor initiating cancer cell characteristics which are thought being responsible for the metastasis of breast cancer. (PMID:28231808)
- Low ITIH5 expression is associated with liver metastasis in pancreatic cancer. (PMID:28289921)
- ITIH5 may represent a novel modulator of TGF-beta superfamily signaling. (PMID:28940371)
- The results demonstrated that the MIR31HG-miR-31-ITIH5-PIK3CG pathway plays a role in the pathogenesis of Hirschsprung disease. (PMID:29626357)
- Genetic effects on planum temporale asymmetry and their limited relevance to neurodevelopmental disorders, intelligence or educational attainment. (PMID:31887566)
- Inter-alpha-Trypsin Inhibitor Heavy Chain 5 (ITIH5) Is a Natural Stabilizer of Hyaluronan That Modulates Biological Processes in the Skin. (PMID:32799206)
- Suppression of pancreatic cancer liver metastasis by secretion-deficient ITIH5. (PMID:33024269)
- The ECM Modulator ITIH5 Affects Cell Adhesion, Motility and Chemotherapeutic Response of Basal/Squamous-Like (BASQ) Bladder Cancer Cells. (PMID:33924987)
- ITIH5, a p53-responsive gene, inhibits the growth and metastasis of melanoma cells by downregulating the transcriptional activity of KLF4. (PMID:33935281)
- ITIH5 as a multifaceted player in pancreatic cancer suppression, impairing tyrosine kinase signaling, cell adhesion and migration. (PMID:38375974)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | itih5 | ENSDARG00000045517 |
| mus_musculus | Itih5 | ENSMUSG00000025780 |
| rattus_norvegicus | Itih5 | ENSRNOG00000049614 |
Paralogs (11): ITIH4 (ENSG00000055955), ITIH1 (ENSG00000055957), ITIH6 (ENSG00000102313), PARP4 (ENSG00000102699), VWA5A (ENSG00000110002), VWA5B2 (ENSG00000145198), ITIH2 (ENSG00000151655), VWA5B1 (ENSG00000158816), ITIH3 (ENSG00000162267), VWA3B (ENSG00000168658), VWA3A (ENSG00000175267)
Protein
Protein identifiers
Inter-alpha-trypsin inhibitor heavy chain H5 — Q86UX2 (reviewed: Q86UX2)
All UniProt accessions (4): A0A096LP62, C9J2H1, G5E9D8, H7C5A6
UniProt curated annotations — full annotation on UniProt →
Function. May act as a tumor suppressor.
Subcellular location. Secreted.
Tissue specificity. Abundantly expressed in placenta. Less abundant expression in mammary gland and ovary. Expression is barely detectable levels in all other tissues tested.
Induction. Down-regulated in breast tumors.
Similarity. Belongs to the ITIH family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q86UX2-1 | 1 | yes |
| Q86UX2-2 | 2 | |
| Q86UX2-3 | 3 | |
| Q86UX2-4 | 4 |
RefSeq proteins (3): NP_001001851, NP_085046, NP_116206 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002035 | VWF_A | Domain |
| IPR010600 | ITI_HC_C | Domain |
| IPR013694 | VIT | Domain |
| IPR036465 | vWFA_dom_sf | Homologous_superfamily |
| IPR050934 | ITIH | Family |
Pfam: PF00092, PF06668, PF08487
UniProt features (34 total): glycosylation site 8, splice variant 8, sequence variant 7, sequence conflict 4, region of interest 3, domain 2, signal peptide 1, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86UX2-F1 | 78.89 | 0.48 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (8): 421, 508, 776, 795, 862, 97, 127, 231
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 201 (showing top):
WALLACE_PROSTATE_CANCER_RACE_UP, BENPORATH_ES_WITH_H3K27ME3, WHITEHURST_PACLITAXEL_SENSITIVITY, GAUSSMANN_MLL_AF4_FUSION_TARGETS_A_DN, CHANDRAN_METASTASIS_DN, ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_UP, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, CAIRO_HEPATOBLASTOMA_CLASSES_DN, MARTINEZ_RB1_TARGETS_UP, GOBP_HYALURONAN_METABOLIC_PROCESS, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM3, BOQUEST_STEM_CELL_CULTURED_VS_FRESH_DN, DELYS_THYROID_CANCER_DN, GOBP_AMINOGLYCAN_METABOLIC_PROCESS, NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_DN
GO Biological Process (2): hyaluronan metabolic process (GO:0030212), uterus development (GO:0060065)
GO Molecular Function (2): serine-type endopeptidase inhibitor activity (GO:0004867), peptidase inhibitor activity (GO:0030414)
GO Cellular Component (2): extracellular region (GO:0005576), extracellular matrix (GO:0031012)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| glycosaminoglycan metabolic process | 1 |
| animal organ development | 1 |
| reproductive structure development | 1 |
| serine-type endopeptidase activity | 1 |
| endopeptidase inhibitor activity | 1 |
| enzyme inhibitor activity | 1 |
| peptidase activity | 1 |
| peptidase regulator activity | 1 |
| cellular anatomical structure | 1 |
| external encapsulating structure | 1 |
Protein interactions and networks
STRING
1316 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ITIH5 | TNFAIP6 | P98066 | 660 |
| ITIH5 | RASAL3 | Q86YV0 | 497 |
| ITIH5 | GLOD5 | A6NK44 | 461 |
| ITIH5 | HOXD10 | P28358 | 380 |
| ITIH5 | RASSF1 | Q9NS23 | 370 |
| ITIH5 | TMEM231 | Q9H6L2 | 361 |
| ITIH5 | PPFIBP2 | Q8ND30 | 326 |
| ITIH5 | GRAMD1B | Q3KR37 | 309 |
| ITIH5 | NKX2-6 | A6NCS4 | 300 |
| ITIH5 | CST6 | Q15828 | 298 |
| ITIH5 | PDCD5 | O14737 | 285 |
| ITIH5 | VGLL3 | A8MV65 | 284 |
| ITIH5 | AMBP | P00977 | 281 |
| ITIH5 | GAREM1 | Q9H706 | 279 |
| ITIH5 | DKK3 | Q9UBP4 | 276 |
IntAct
10 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| BAG4 | ITIH5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CHEK2 | ITIH5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ESR2 | ITIH5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ITIH5 | HMMR | psi-mi:“MI:0915”(physical association) | 0.370 |
| ITIH5 | NOTCH2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ITIH5 | PPM1D | psi-mi:“MI:0915”(physical association) | 0.370 |
| ITIH5 | RAD51 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ITIH5 | RB1CC1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ITIH5 | XRCC3 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (11): ITIH5 (Two-hybrid), ITIH5 (Two-hybrid), ITIH5 (Two-hybrid), ITIH5 (Two-hybrid), ITIH5 (Two-hybrid), ITIH5 (Two-hybrid), ITIH5 (Two-hybrid), ITIH5 (Two-hybrid), ITIH5 (Two-hybrid), ITIH5 (Affinity Capture-MS), ITIH5 (Two-hybrid)
ESM2 similar proteins: A2VDP6, A4D0V7, B1WB06, F1N2K1, O43548, P06802, P15396, P22413, P50127, P79949, P97259, Q05004, Q08834, Q08BN9, Q09328, Q14C87, Q14DG7, Q2TU62, Q3L7M0, Q3U095, Q52KP5, Q5R748, Q5RCA5, Q5XI89, Q5ZLK4, Q6AX23, Q6DNG6, Q6UWF7, Q6ZXA0, Q76HP2, Q76HP3, Q86UX2, Q8BG22, Q8C7K6, Q8K1B9, Q8N323, Q8NCG5, Q8NHY0, Q8R4G6, Q8VI38
Diamond homologs: A2VE29, A6X935, O02668, P19823, P19827, P56652, P79263, P97278, P97279, P97280, Q06033, Q0VCM5, Q14624, Q29052, Q3T052, Q5RB37, Q5RER0, Q61702, Q61703, Q61704, Q63416, Q6UXX5, Q86UX2, Q8BJD1, Q9GLY5, P56651, A1A5Q7, Q5RJF7, A6NCI4, Q8CFG5, Q8IZS8, Q9Z1L5, Q3UVV9, A8XP97, P34374, Q9ZQ46
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
188 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 147 |
| Likely benign | 16 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3129 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:7569666:A:AC | donor_gain | 1.0000 |
| 10:7569667:C:CC | donor_gain | 1.0000 |
| 10:7569781:TCCA:T | acceptor_gain | 1.0000 |
| 10:7569782:CCA:C | acceptor_gain | 1.0000 |
| 10:7569782:CCAC:C | acceptor_gain | 1.0000 |
| 10:7569783:CAC:C | acceptor_gain | 1.0000 |
| 10:7569785:C:CC | acceptor_gain | 1.0000 |
| 10:7569789:C:CT | acceptor_gain | 1.0000 |
| 10:7569790:A:T | acceptor_gain | 1.0000 |
| 10:7569794:C:CT | acceptor_gain | 1.0000 |
| 10:7569795:A:T | acceptor_gain | 1.0000 |
| 10:7569804:C:CT | acceptor_gain | 1.0000 |
| 10:7569805:G:T | acceptor_gain | 1.0000 |
| 10:7576449:GTACC:G | donor_loss | 1.0000 |
| 10:7576450:TA:T | donor_loss | 1.0000 |
| 10:7576452:C:CT | donor_loss | 1.0000 |
| 10:7576452:CCTGG:C | donor_gain | 1.0000 |
| 10:7579776:T:TA | donor_gain | 1.0000 |
| 10:7579779:T:TA | donor_gain | 1.0000 |
| 10:7579782:T:TA | donor_gain | 1.0000 |
| 10:7585934:T:A | donor_gain | 1.0000 |
| 10:7585940:C:A | donor_gain | 1.0000 |
| 10:7586070:C:CC | acceptor_gain | 1.0000 |
| 10:7617111:ACC:A | donor_loss | 1.0000 |
| 10:7617112:CC:C | donor_loss | 1.0000 |
| 10:7617279:TCAT:T | acceptor_gain | 1.0000 |
| 10:7617279:TCATC:T | acceptor_loss | 1.0000 |
| 10:7617280:CAT:C | acceptor_gain | 1.0000 |
| 10:7617280:CATC:C | acceptor_gain | 1.0000 |
| 10:7617281:AT:A | acceptor_gain | 1.0000 |
AlphaMissense
6194 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:7586001:A:C | F336L | 0.999 |
| 10:7586001:A:T | F336L | 0.999 |
| 10:7586003:A:G | F336L | 0.999 |
| 10:7569729:G:C | C696W | 0.997 |
| 10:7616012:A:C | S303R | 0.997 |
| 10:7616012:A:T | S303R | 0.997 |
| 10:7616014:T:G | S303R | 0.997 |
| 10:7569730:C:G | C696S | 0.996 |
| 10:7569730:C:T | C696Y | 0.996 |
| 10:7569731:A:G | C696R | 0.996 |
| 10:7569731:A:T | C696S | 0.996 |
| 10:7579954:C:A | G407W | 0.996 |
| 10:7616013:C:A | S303I | 0.996 |
| 10:7641972:A:G | F85S | 0.996 |
| 10:7563200:G:C | C904W | 0.995 |
| 10:7569726:G:C | F697L | 0.995 |
| 10:7569726:G:T | F697L | 0.995 |
| 10:7569728:A:G | F697L | 0.995 |
| 10:7569765:A:C | F684L | 0.995 |
| 10:7569765:A:T | F684L | 0.995 |
| 10:7569767:A:G | F684L | 0.995 |
| 10:7569775:T:C | D681G | 0.995 |
| 10:7616003:C:A | M306I | 0.995 |
| 10:7616003:C:G | M306I | 0.995 |
| 10:7616003:C:T | M306I | 0.995 |
| 10:7616013:C:T | S303N | 0.995 |
| 10:7616028:A:G | F298S | 0.995 |
| 10:7563201:C:G | C904S | 0.994 |
| 10:7563202:A:T | C904S | 0.994 |
| 10:7579953:C:A | G407V | 0.994 |
dbSNP variants (sampled 300 via entrez): RS1000059143 (10:7648329 A>T), RS1000067676 (10:7666890 C>A,G,T), RS1000072706 (10:7642374 A>G), RS1000073385 (10:7584439 G>A), RS1000098404 (10:7667879 C>T), RS1000102931 (10:7659923 CT>C), RS1000105232 (10:7567665 AGTT>A), RS1000115114 (10:7567454 C>A), RS1000179908 (10:7571439 C>T), RS1000211669 (10:7597833 T>C), RS1000316403 (10:7571277 G>T), RS1000316632 (10:7604739 A>T), RS1000331999 (10:7586125 C>T), RS1000332628 (10:7610780 G>A), RS1000376147 (10:7661154 C>G)
Disease associations
OMIM: gene MIM:609783 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): prostate cancer (MONDO:0008315)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006585_47 | Blood protein levels | 9.000000e-12 |
| GCST009391_1426 | Metabolite levels | 4.000000e-06 |
| GCST009459_2 | Planum temporale asymmetry index | 2.000000e-15 |
| GCST010703_302 | Brain morphology (MOSTest) | 7.000000e-28 |
| GCST90010427_14 | Left–right brain asymmetry | 5.000000e-38 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010407 | triacylglycerol 48:4 measurement |
| EFO:0004346 | neuroimaging measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
44 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 8 |
| Benzo(a)pyrene | affects methylation, increases expression, increases methylation | 4 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| belinostat | increases expression, affects cotreatment | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Nickel | decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| triphenyl phosphate | increases expression | 1 |
| bisphenol A | affects binding, increases reaction | 1 |
| deoxynivalenol | decreases expression | 1 |
| trichostatin A | increases expression | 1 |
| arsenite | increases methylation | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| chloropicrin | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| nutlin 3 | affects cotreatment, increases expression, increases secretion | 1 |
| abrine | decreases expression | 1 |
| ormosil | affects binding, decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Vorinostat | increases expression | 1 |
| Arsenic | affects methylation | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.