ITPR2
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Also known as IP3R2CFAP48
Summary
ITPR2 (inositol 1,4,5-trisphosphate receptor type 2, HGNC:6181) is a protein-coding gene on chromosome 12p11.23, encoding Inositol 1,4,5-trisphosphate-gated calcium channel ITPR2 (Q14571). Inositol 1,4,5-trisphosphate-gated calcium channel that upon inositol 1,4,5-trisphosphate binding transports calcium from the endoplasmic reticulum lumen to cytoplasm.
The protein encoded by this gene belongs to the inositol 1,4,5-triphosphate receptor family, whose members are second messenger intracellular calcium release channels. These proteins mediate a rise in cytoplasmic calcium in response to receptor activated production of inositol triphosphate. Inositol triphosphate receptor-mediated signaling is involved in many processes including cell migration, cell division, smooth muscle contraction, and neuronal signaling. This protein is a type 2 receptor that consists of a cytoplasmic amino-terminus that binds inositol triphosphate, six membrane-spanning helices that contribute to the ion pore, and a short cytoplasmic carboxy-terminus. A mutation in this gene has been associated with anhidrosis, suggesting that intracellular calcium release mediated by this protein is required for eccrine sweat production.
Source: NCBI Gene 3709 — RefSeq curated summary.
At a glance
- Gene–disease (curated): isolated anhidrosis with normal sweat glands (Supportive, GenCC)
- GWAS associations: 84
- Clinical variants (ClinVar): 371 total — 2 pathogenic
- Phenotypes (HPO): 5
- Druggable target: yes
- MANE Select transcript:
NM_002223
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6181 |
| Approved symbol | ITPR2 |
| Name | inositol 1,4,5-trisphosphate receptor type 2 |
| Location | 12p11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | IP3R2, CFAP48 |
| Ensembl gene | ENSG00000123104 |
| Ensembl biotype | protein_coding |
| OMIM | 600144 |
| Entrez | 3709 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 3 protein_coding_CDS_not_defined, 3 retained_intron, 2 protein_coding, 2 nonsense_mediated_decay
ENST00000242737, ENST00000381340, ENST00000451599, ENST00000536627, ENST00000538984, ENST00000540429, ENST00000540791, ENST00000543958, ENST00000545235, ENST00000545902
RefSeq mRNA: 3 — MANE Select: NM_002223
NM_001414174, NM_001414175, NM_002223
CCDS: CCDS41764
Canonical transcript exons
ENST00000381340 — 57 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001488260 | 26335352 | 26339483 |
| ENSE00001488261 | 26340167 | 26340328 |
| ENSE00001488263 | 26387434 | 26387594 |
| ENSE00001488290 | 26487068 | 26487251 |
| ENSE00001488291 | 26494153 | 26494340 |
| ENSE00001488292 | 26495152 | 26495260 |
| ENSE00001488294 | 26550247 | 26550355 |
| ENSE00001488297 | 26556233 | 26556375 |
| ENSE00001488298 | 26561762 | 26561952 |
| ENSE00001488300 | 26578713 | 26578833 |
| ENSE00001488302 | 26580027 | 26580155 |
| ENSE00001488304 | 26595465 | 26595590 |
| ENSE00001488306 | 26596883 | 26597134 |
| ENSE00001488308 | 26599145 | 26599345 |
| ENSE00001488309 | 26599987 | 26600109 |
| ENSE00001488310 | 26602370 | 26602495 |
| ENSE00001488312 | 26602617 | 26602706 |
| ENSE00001488313 | 26621123 | 26621296 |
| ENSE00001488319 | 26631866 | 26632059 |
| ENSE00001488320 | 26653976 | 26654126 |
| ENSE00001488321 | 26655708 | 26655852 |
| ENSE00001488322 | 26656297 | 26656548 |
| ENSE00001488324 | 26657707 | 26657892 |
| ENSE00001488325 | 26658011 | 26658130 |
| ENSE00001488326 | 26659113 | 26659285 |
| ENSE00001488328 | 26663685 | 26663846 |
| ENSE00001488329 | 26665910 | 26666051 |
| ENSE00001488332 | 26681874 | 26682034 |
| ENSE00001488333 | 26682574 | 26682673 |
| ENSE00001488334 | 26686481 | 26686632 |
| ENSE00001488335 | 26695606 | 26695650 |
| ENSE00001488340 | 26715299 | 26715445 |
| ENSE00001488341 | 26715752 | 26715835 |
| ENSE00001488343 | 26716144 | 26716242 |
| ENSE00001488348 | 26832690 | 26833194 |
| ENSE00001602120 | 26790157 | 26790227 |
| ENSE00003464550 | 26628033 | 26628162 |
| ENSE00003467575 | 26427913 | 26428088 |
| ENSE00003469369 | 26724656 | 26724742 |
| ENSE00003479111 | 26486104 | 26486360 |
| ENSE00003494789 | 26622240 | 26622405 |
| ENSE00003496141 | 26443543 | 26443650 |
| ENSE00003496421 | 26481131 | 26481241 |
| ENSE00003515274 | 26400128 | 26400258 |
| ENSE00003526274 | 26439127 | 26439319 |
| ENSE00003540833 | 26483698 | 26483898 |
| ENSE00003541635 | 26475296 | 26475418 |
| ENSE00003562946 | 26624299 | 26624356 |
| ENSE00003566948 | 26419049 | 26419213 |
| ENSE00003572295 | 26722397 | 26722555 |
| ENSE00003582056 | 26725650 | 26725765 |
| ENSE00003582768 | 26415303 | 26415498 |
| ENSE00003589588 | 26411320 | 26411412 |
| ENSE00003621359 | 26476912 | 26477007 |
| ENSE00003626369 | 26398876 | 26399041 |
| ENSE00003652573 | 26711173 | 26711268 |
| ENSE00003680829 | 26436221 | 26436346 |
Expression profiles
Bgee: expression breadth ubiquitous, 273 present calls, max score 94.09.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 15.5613 / max 343.7639, expressed in 1677 samples.
FANTOM5 promoters (13 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 130236 | 13.6125 | 1647 |
| 130238 | 0.3943 | 199 |
| 206653 | 0.3535 | 204 |
| 130235 | 0.2756 | 111 |
| 130239 | 0.2254 | 106 |
| 130237 | 0.2064 | 82 |
| 130234 | 0.1993 | 92 |
| 130229 | 0.0846 | 36 |
| 130228 | 0.0822 | 38 |
| 130231 | 0.0754 | 9 |
Top tissues by expression
292 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 94.09 | gold quality |
| adrenal tissue | UBERON:0018303 | 93.47 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 92.78 | gold quality |
| upper leg skin | UBERON:0004262 | 90.58 | gold quality |
| colonic epithelium | UBERON:0000397 | 90.46 | gold quality |
| skin of hip | UBERON:0001554 | 90.41 | gold quality |
| sural nerve | UBERON:0015488 | 90.36 | gold quality |
| liver | UBERON:0002107 | 90.01 | gold quality |
| oral cavity | UBERON:0000167 | 90.00 | gold quality |
| tendon | UBERON:0000043 | 89.41 | gold quality |
| bone marrow cell | CL:0002092 | 89.18 | gold quality |
| mammary duct | UBERON:0001765 | 88.85 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 88.58 | gold quality |
| jejunal mucosa | UBERON:0000399 | 88.48 | gold quality |
| tonsil | UBERON:0002372 | 87.10 | gold quality |
| upper arm skin | UBERON:0004263 | 86.68 | gold quality |
| caput epididymis | UBERON:0004358 | 86.61 | gold quality |
| corpus epididymis | UBERON:0004359 | 86.58 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 86.24 | gold quality |
| right lobe of liver | UBERON:0001114 | 85.78 | gold quality |
| parotid gland | UBERON:0001831 | 85.71 | gold quality |
| adrenal gland | UBERON:0002369 | 85.28 | gold quality |
| corpus callosum | UBERON:0002336 | 85.25 | gold quality |
| right adrenal gland | UBERON:0001233 | 84.88 | gold quality |
| lower lobe of lung | UBERON:0008949 | 84.88 | gold quality |
| left adrenal gland | UBERON:0001234 | 84.75 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 84.64 | gold quality |
| gingiva | UBERON:0001828 | 84.58 | gold quality |
| mammary gland | UBERON:0001911 | 84.58 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 84.53 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 70.83 |
| E-CURD-119 | yes | 38.79 |
| E-HCAD-25 | yes | 23.93 |
| E-CURD-114 | yes | 11.58 |
| E-ANND-3 | yes | 9.09 |
| E-CURD-53 | no | 133.31 |
| E-MTAB-8410 | no | 3.24 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MYCN, NFATC1
miRNA regulators (miRDB)
194 targeting ITPR2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-552-5P | 99.93 | 68.56 | 1583 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-381-3P | 99.93 | 71.87 | 2854 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-12133 | 99.92 | 71.82 | 2006 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
Literature-anchored findings (GeneRIF, showing 31)
- Antibodies are detected most frequently in rheumatoid arthritis. (PMID:17437169)
- Genetic variation is susceptibility factor for amyotrophic lateral sclerosis(ALS). Involved in glutamate-mediated neurotransmission, is one of main regulators of intracellular calcium concentrations, and has important role in apoptosis. (PMID:17827064)
- Provide evidence for a functional role of the de novo coupling between hTRPC1 and IP3RII in the activation of store operated calcium entry in platelets. (PMID:18249094)
- Parathyroid hormone communicates with IP(3)R via “cAMP junctions” that allow local delivery of a supramaximal concentration of cAMP to IP(3)R, directly increasing their sensitivity to IP(3). (PMID:18936250)
- The result of this study suggested that ITPR2 that do not modulate the risk for SALS in the German population. (PMID:19464757)
- Elevated InsP(3)R2 expression was also detected in hearts from human patients with heart failure after ischemic dilated cardiomyopathy, as well as in aortic-banded hypertrophic mouse hearts. (PMID:19549843)
- Dystrophic (RCDMD) human muscle cells show 5-fold overexpression of IP(3)R2 and down-regulation of IP(3)R3 compared with normal human muscle cells. (PMID:20395455)
- The knock down of IP3R-2 significantly reduced the intracellular Ca2+ response and this reduced Ca2+ response did not affect the activation of CREB but significantly decreased the activation of NFAT. (PMID:21063100)
- ITPR2 is a functional target gene of the BACH1 transcription factor according to ChIP-seq and knockdown analysis in HEK 293 cells. (PMID:21555518)
- Functional IP3R2s are expressed in the mouse sinoatrial node and could serve as an additional divalent calcium ion-dependent mechanism in modulating cardiac pacemaker. (PMID:21852551)
- These data suggest that ER Ca(2+) released by IP(3) receptors may be detrimental in amyotrophic lateral sclerosis and that motor neurons are vulnerable to impaired Ca(2+) metabolism. (PMID:23131553)
- These results suggest an involvement of hydrogen sulfide in both IP3-induced calcium signalling and induction of apoptosis, possibly through the activation of endoplasmic reticulum stress. (PMID:23582047)
- Studies indicate that three subtypes of inositol 1,4,5-trisphosphate (IP3) receptors (IP3R1, -2, and -3) are assembled to form homo- and heterotetrameric channels that mediate Ca(2+) release from intracellular stores. (PMID:23955339)
- The Galphaq-protein/coupled receptor/IP3R axis modulates the electromechanical properties of the human myocardium and its propensity to develop arrhythmias. (PMID:23983250)
- ITPR2 and hypertrophy specific gene expression is regulated, in part, by a positive feedback regulation between InsP3R2 and calcineurin-NFATc signaling pathways. (PMID:24415751)
- results show a functional role of calcium release by the ITPR2 channel and its subsequent accumulation in the mitochondria (PMID:24797322)
- A genome-wide association study identifies ITPR2 as a susceptibility gene for Kashin-Beck disease in Han Chinese. (PMID:25303641)
- Loss of InsP3R2-mediated calcium release causes isolated anhidrosis in humans. (PMID:25329695)
- Disrupting IP3R/Bcl-2 interaction therefore leads in those cells to increased Ca(2) release and apoptosis. Intriguingly, IP3R2 is not only implicated in apoptosis but also in the induction of senescence, another tumour-suppressive mechanism. (PMID:25499268)
- High expression of inositol 1,4,5-trisphosphate receptor, type 2 is associated with acute myeloid leukemia. (PMID:25779662)
- Studies indicate that the ryanodine receptors (RyRs: RyR1, RyR2, RyR3) and inositol 1,4,5-trisphosphate receptors (IP3Rs: IP3R1, IP3R2, IP3R3) are the major Ca(2+) release channels (CRCs) on the endo/sarcoplasmic reticulum (ER/SR). (PMID:25966694)
- the ability to generate tetramers with defined wild type and mutant subunits will be useful in probing fundamental questions relating to IP3Rs (R1, R2, R3) structure and function. (PMID:26009177)
- Data suggest miR-1290 as the new oncomiR involved in laryngeal squamous cell carcinoma pathogenesis probably through downregulation of its target genes MAF and ITPR2. (PMID:26694163)
- we systematically evaluating RCC risk-associated SNPs indentified from previous GWAS in a Chinese population, finding that one SNP located in PDZD2 and two SNPs located in ITPR2 were ccRCC-risk associated in Chinese population. (PMID:26918600)
- Fatty liver induces a c-Jun-mediated decrease in ITPR2 in hepatocytes. (PMID:29023819)
- Molecular cloning, bacterial expression and protein purification of the IBC domain from human IP3R2 have been described. (PMID:30244130)
- The SNP rs11048526 were significantly association with Kashin-Beck Disease which increased the Kashin-Beck Disease risk. (PMID:31066235)
- Type 3 Inositol 1,4,5-Trisphosphate Receptor is a Crucial Regulator of Calcium Dynamics Mediated by Endoplasmic Reticulum in HEK Cells. (PMID:31979185)
- Calcium channel ITPR2 and mitochondria-ER contacts promote cellular senescence and aging. (PMID:33526781)
- Candidate Gene of NOS3, MMP3, AGT, and AGT1R and Pathway Analyses for Platelet Reactivity and Clinical Outcomes of Repeat Revascularization After First PCI in Chinese Patients. (PMID:34860335)
- Inositol 1,4,5-trisphosphate receptor gene variants are related to the risk of breast cancer in a Chinese population. (PMID:36350267)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | itpr2 | ENSDARG00000011909 |
| mus_musculus | Itpr2 | ENSMUSG00000030287 |
| rattus_norvegicus | Itpr2 | ENSRNOG00000001804 |
| drosophila_melanogaster | RyR | FBGN0011286 |
| caenorhabditis_elegans | WBGENE00006801 |
Paralogs (5): ITPR3 (ENSG00000096433), ITPR1 (ENSG00000150995), RYR1 (ENSG00000196218), RYR2 (ENSG00000198626), RYR3 (ENSG00000198838)
Protein
Protein identifiers
Inositol 1,4,5-trisphosphate-gated calcium channel ITPR2 — Q14571 (reviewed: Q14571)
Alternative names: IP3 receptor isoform 2, Inositol 1,4,5-trisphosphate receptor type 2, Type 2 inositol 1,4,5-trisphosphate receptor
All UniProt accessions (3): Q14571, F5GYT5, H7C2X9
UniProt curated annotations — full annotation on UniProt →
Function. Inositol 1,4,5-trisphosphate-gated calcium channel that upon inositol 1,4,5-trisphosphate binding transports calcium from the endoplasmic reticulum lumen to cytoplasm. Exists in two states; a long-lived closed state where the channel is essentially ‘parked’ with only very rare visits to an open state and that ligands facilitate the transition from the ‘parked’ state into a ‘drive’ mode represented by periods of bursting activity.
Subunit / interactions. Homotetramer. Interacts with CABP1. Interacts with BOK; regulates ITPR2 expression. Interacts with BCL2L10. Interacts with TRPC4. Interacts with CHGA and CHGB.
Subcellular location. Endoplasmic reticulum membrane. Cytoplasmic vesicle. Secretory vesicle membrane.
Tissue specificity. Found in skeletal muscle and heart.
Post-translational modifications. Phosphorylation by cAMP-dependent PKA on Ser-937 increases calcium release. Phosphorylation by CaMK2 on Ser-150 significantly decreases the channel open probability.
Disease relevance. Anhidrosis, isolated, with normal sweat glands (ANHD) [MIM:106190] An autosomal recessive disorder characterized by generalized, isolated anhidrosis, severe heat intolerance, and morphologically normal eccrine sweat glands. Body growth, teeth, hair, nails, and skin are normal. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Inositol 1,4,5-trisphosphate-gated calcium channel activity is increased by cAMP that occurs independently of PKA activation. ATP and cytosolic calcium modulate the open probability (Po) predominantly by facilitating extended ‘bursting’ activity of the channel. Inositol 1,4,5-trisphosphate-gated calcium channel activity is inhibited by CALM1 in a calcium-dependent manner.
Similarity. Belongs to the InsP3 receptor family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q14571-1 | Long | yes |
| Q14571-2 | Short, TIPR |
RefSeq proteins (3): NP_001401103, NP_001401104, NP_002214* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000493 | InsP3_rcpt | Family |
| IPR000699 | RIH_dom | Domain |
| IPR005821 | Ion_trans_dom | Domain |
| IPR013662 | RIH_assoc-dom | Domain |
| IPR014821 | Ins145_P3_rcpt | Domain |
| IPR015925 | Ryanodine_IP3_receptor | Family |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR016093 | MIR_motif | Domain |
| IPR035910 | RyR/IP3R_RIH_dom_sf | Homologous_superfamily |
| IPR036300 | MIR_dom_sf | Homologous_superfamily |
Pfam: PF00520, PF01365, PF02815, PF08454, PF08709
Catalyzed reactions (Rhea), 1 shown:
- Ca(2+)(in) = Ca(2+)(out) (RHEA:29671)
UniProt features (63 total): binding site 28, topological domain 7, transmembrane region 6, modified residue 6, domain 5, sequence variant 4, sequence conflict 3, splice variant 2, chain 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
No AlphaFold model available for Q14571 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (28): 265; 267; 268; 269; 503; 507; 510; 567; 568; 569; 744; 1124 …
Post-translational modifications (6): 937, 1160, 1709, 2607, 2633, 2636
Function
Pathways and Gene Ontology
Reactome pathways
49 pathways
| ID | Pathway |
|---|---|
| R-HSA-112043 | PLC beta mediated events |
| R-HSA-114508 | Effects of PIP2 hydrolysis |
| R-HSA-139853 | Elevation of cytosolic Ca2+ levels |
| R-HSA-1489509 | DAG and IP3 signaling |
| R-HSA-2029485 | Role of phospholipids in phagocytosis |
| R-HSA-2871809 | FCERI mediated Ca+2 mobilization |
| R-HSA-381676 | Glucagon-like Peptide-1 (GLP1) regulates insulin secretion |
| R-HSA-4086398 | Ca2+ pathway |
| R-HSA-422356 | Regulation of insulin secretion |
| R-HSA-5218921 | VEGFR2 mediated cell proliferation |
| R-HSA-5578775 | Ion homeostasis |
| R-HSA-5607763 | CLEC7A (Dectin-1) induces NFAT activation |
| R-HSA-9664323 | FCGR3A-mediated IL10 synthesis |
| R-HSA-983695 | Antigen activates B Cell Receptor (BCR) leading to generation of second messengers |
| R-HSA-109582 | Hemostasis |
| R-HSA-111885 | Opioid Signalling |
| R-HSA-112040 | G-protein mediated events |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-1430728 | Metabolism |
| R-HSA-162582 | Signal Transduction |
| R-HSA-163685 | Integration of energy metabolism |
| R-HSA-1643685 | Disease |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-194138 | Signaling by VEGF |
| R-HSA-195721 | Signaling by WNT |
| R-HSA-2029480 | Fcgamma receptor (FCGR) dependent phagocytosis |
| R-HSA-2454202 | Fc epsilon receptor (FCERI) signaling |
| R-HSA-372790 | Signaling by GPCR |
| R-HSA-3858494 | Beta-catenin independent WNT signaling |
MSigDB gene sets: 416 (showing top):
MORF_RAGE, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_RESPONSE_TO_ETHANOL, MORF_FLT1, REACTOME_INNATE_IMMUNE_SYSTEM, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, BASSO_B_LYMPHOCYTE_NETWORK, GOCC_SECRETORY_GRANULE, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, CERVERA_SDHB_TARGETS_1_DN, YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_1, RIZKI_TUMOR_INVASIVENESS_3D_DN, MORF_ESR1, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, GOBP_MONOATOMIC_CATION_TRANSPORT
GO Biological Process (11): response to hypoxia (GO:0001666), signal transduction (GO:0007165), release of sequestered calcium ion into cytosol (GO:0051209), cellular response to cAMP (GO:0071320), cellular response to ethanol (GO:0071361), monoatomic ion transport (GO:0006811), calcium ion transport (GO:0006816), calcium-mediated signaling (GO:0019722), monoatomic ion transmembrane transport (GO:0034220), transmembrane transport (GO:0055085), calcium ion transmembrane transport (GO:0070588)
GO Molecular Function (13): inositol 1,4,5-trisphosphate-gated calcium channel activity (GO:0005220), calcium ion binding (GO:0005509), ATP binding (GO:0005524), calcium ion transmembrane transporter activity (GO:0015085), phosphatidylinositol binding (GO:0035091), transmembrane transporter binding (GO:0044325), inositol 1,4,5 trisphosphate binding (GO:0070679), scaffold protein binding (GO:0097110), nucleotide binding (GO:0000166), monoatomic ion channel activity (GO:0005216), calcium channel activity (GO:0005262), intracellularly gated calcium channel activity (GO:0015278), metal ion binding (GO:0046872)
GO Cellular Component (13): endoplasmic reticulum membrane (GO:0005789), plasma membrane (GO:0005886), cell cortex (GO:0005938), membrane (GO:0016020), sarcoplasmic reticulum (GO:0016529), transport vesicle membrane (GO:0030658), secretory granule membrane (GO:0030667), platelet dense tubular network membrane (GO:0031095), sarcoplasmic reticulum membrane (GO:0033017), signaling receptor complex (GO:0043235), cytoplasm (GO:0005737), endoplasmic reticulum (GO:0005783), cytoplasmic vesicle (GO:0031410)
Reactome top-level categories
Rollup of top-18 pathways:
| Category | Pathways |
|---|---|
| G-protein mediated events | 1 |
| G alpha (q) signalling events | 1 |
| Platelet activation, signaling and aggregation | 1 |
| Platelet calcium homeostasis | 1 |
| Intracellular signaling by second messengers | 1 |
| Fcgamma receptor (FCGR) dependent phagocytosis | 1 |
| Fc epsilon receptor (FCERI) signaling | 1 |
| Regulation of insulin secretion | 1 |
| Beta-catenin independent WNT signaling | 1 |
| Integration of energy metabolism | 1 |
| VEGFA-VEGFR2 Pathway | 1 |
| Cardiac conduction | 1 |
| CLEC7A (Dectin-1) signaling | 1 |
| Anti-inflammatory response favouring Leishmania parasite infection | 1 |
| Signaling by the B Cell Receptor (BCR) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| bounding membrane of organelle | 4 |
| cytoplasm | 3 |
| cellular process | 2 |
| transport | 2 |
| anion binding | 2 |
| protein binding | 2 |
| cell periphery | 2 |
| cellular anatomical structure | 2 |
| cytoplasmic vesicle membrane | 2 |
| response to stress | 1 |
| response to decreased oxygen levels | 1 |
| cell communication | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| intercellular transport | 1 |
| calcium ion transmembrane import into cytosol | 1 |
| response to cAMP | 1 |
| cellular response to nitrogen compound | 1 |
| cellular response to oxygen-containing compound | 1 |
| response to ethanol | 1 |
| cellular response to alcohol | 1 |
| metal ion transport | 1 |
| intracellular signaling cassette | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| calcium ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| intracellularly gated calcium channel activity | 1 |
| inositol 1,4,5 trisphosphate binding | 1 |
| metal ion binding | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| metal ion transmembrane transporter activity | 1 |
| calcium ion transmembrane transport | 1 |
| alcohol binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| monoatomic ion transmembrane transporter activity | 1 |
| channel activity | 1 |
Protein interactions and networks
STRING
1537 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ITPR2 | FUNDC1 | Q8IVP5 | 978 |
| ITPR2 | TRPC3 | Q13507 | 907 |
| ITPR2 | SSPN | Q14714 | 781 |
| ITPR2 | VDAC1 | P21796 | 776 |
| ITPR2 | MPP4 | Q96JB8 | 750 |
| ITPR2 | ADCY6 | O43306 | 730 |
| ITPR2 | ATP2A2 | P16614 | 705 |
| ITPR2 | TRPC1 | P48995 | 700 |
| ITPR2 | LYN | P07948 | 683 |
| ITPR2 | GRK7 | Q8WTQ7 | 669 |
| ITPR2 | STIM1 | Q13586 | 659 |
| ITPR2 | GRK1 | Q15835 | 649 |
| ITPR2 | DPP6 | P42658 | 617 |
| ITPR2 | BANK1 | Q8NDB2 | 599 |
| ITPR2 | ATP2A1 | O14983 | 592 |
IntAct
86 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SGF29 | NDC80 | psi-mi:“MI:0914”(association) | 0.840 |
| SLC16A3 | CASK | psi-mi:“MI:0914”(association) | 0.590 |
| LPAR1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| IPPK | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| CACNG2 | CCNT1 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNRF4 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| CA8 | IGLL5 | psi-mi:“MI:0914”(association) | 0.530 |
| TAFA4 | NRP1 | psi-mi:“MI:0914”(association) | 0.530 |
| RAB29 | CHM | psi-mi:“MI:0914”(association) | 0.530 |
| BBOX1 | ITPRID2 | psi-mi:“MI:0914”(association) | 0.530 |
| TRPC4 | ITPR2 | psi-mi:“MI:0915”(physical association) | 0.530 |
| TRPC4 | ITPR2 | psi-mi:“MI:0407”(direct interaction) | 0.530 |
| ITPR2 | EIF4G1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ITPR2 | BCL2L10 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SDC1 | ILVBL | psi-mi:“MI:0915”(physical association) | 0.400 |
| Lima1 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Myo1c | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| CAPZA2 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| MYH9 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Sumo3 | GABPB1 | psi-mi:“MI:0914”(association) | 0.350 |
| NUP107 | POM121C | psi-mi:“MI:0914”(association) | 0.350 |
| CAMK2D | DVL2 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC15A3 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (192): ITPR2 (Affinity Capture-RNA), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS), ITPR2 (Affinity Capture-MS)
ESM2 similar proteins: A2AGL3, B0LPN4, E9PZQ0, E9Q401, F1LMY4, F1Q8X5, P0C7A6, P11716, P11881, P16960, P21817, P29994, P29995, P30957, P42694, P48553, Q0VEJ0, Q14571, Q14643, Q15413, Q1LVW0, Q24498, Q28C34, Q3TLI0, Q5F361, Q5RCP7, Q6NRC7, Q6NRD0, Q6NYU2, Q6QI06, Q6R327, Q7SXV1, Q7Z3V4, Q7ZUV0, Q7ZYD9, Q80UK0, Q86VW0, Q8BHL5, Q8BIK4, Q8BWW9
Diamond homologs: A2AGL3, B0LPN4, E9PZQ0, E9Q401, F1LMY4, P11716, P11881, P16960, P21817, P29993, P29994, P29995, P30957, P70227, Q14571, Q14573, Q14643, Q15413, Q24498, Q5R881, Q63269, Q8BVR6, Q8WN95, Q8WN96, Q8WSR4, Q92736, Q95LP3, Q96DX4, Q9TS33, Q9TU34, Q9Y0A1, Q9Z329, A0A5F9C6I2, D3ZXK7, Q5XPI3, Q5XPI4, Q9SIZ8, Q9VNV3, Q19614, Q91X20
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RNF170 | “down-regulates activity” | ITPR2 | polyubiquitination |
| CAMK2D | “down-regulates activity” | ITPR2 | phosphorylation |
| Erlin | “down-regulates quantity by destabilization” | ITPR2 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 108 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Glutamate binding, activation of AMPA receptors and synaptic plasticity | 5 | 52.1× | 1e-05 |
| Trafficking of AMPA receptors | 5 | 37.2× | 4e-05 |
| G-protein mediated events | 5 | 22.4× | 2e-04 |
| DAG and IP3 signaling | 5 | 21.7× | 2e-04 |
| Opioid Signalling | 5 | 18.2× | 4e-04 |
| PLC beta mediated events | 5 | 18.2× | 4e-04 |
| Assembly and cell surface presentation of NMDA receptors | 5 | 17.4× | 4e-04 |
| Ion homeostasis | 5 | 14.0× | 8e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| long-term synaptic potentiation | 6 | 18.1× | 4e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
371 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 264 |
| Likely benign | 30 |
| Benign | 20 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 189316 | NM_002223.4(ITPR2):c.7492G>A (p.Gly2498Ser) | Pathogenic |
| 4082119 | NM_002223.4(ITPR2):c.7391del (p.Ala2463_Ser2464insTer) | Pathogenic |
SpliceAI
12019 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:26340164:CACCT:C | donor_loss | 1.0000 |
| 12:26340165:A:AC | donor_gain | 1.0000 |
| 12:26340166:C:CC | donor_gain | 1.0000 |
| 12:26340166:C:CG | donor_loss | 1.0000 |
| 12:26340166:CCTG:C | donor_gain | 1.0000 |
| 12:26340329:C:CC | acceptor_gain | 1.0000 |
| 12:26387592:GTCC:G | acceptor_loss | 1.0000 |
| 12:26387593:TCCTG:T | acceptor_loss | 1.0000 |
| 12:26387594:CCTG:C | acceptor_loss | 1.0000 |
| 12:26387595:CTG:C | acceptor_loss | 1.0000 |
| 12:26387596:T:C | acceptor_loss | 1.0000 |
| 12:26398875:CCA:C | donor_gain | 1.0000 |
| 12:26398960:C:CT | acceptor_gain | 1.0000 |
| 12:26400116:A:AC | donor_gain | 1.0000 |
| 12:26400117:C:CC | donor_gain | 1.0000 |
| 12:26400117:CT:C | donor_gain | 1.0000 |
| 12:26400123:CTTA:C | donor_loss | 1.0000 |
| 12:26400124:TTA:T | donor_loss | 1.0000 |
| 12:26400125:TA:T | donor_loss | 1.0000 |
| 12:26400126:A:AC | donor_gain | 1.0000 |
| 12:26400126:ACAT:A | donor_gain | 1.0000 |
| 12:26400127:C:CC | donor_gain | 1.0000 |
| 12:26400127:CA:C | donor_gain | 1.0000 |
| 12:26400127:CAT:C | donor_gain | 1.0000 |
| 12:26400127:CATC:C | donor_gain | 1.0000 |
| 12:26400172:T:TA | donor_gain | 1.0000 |
| 12:26400255:TCAG:T | acceptor_gain | 1.0000 |
| 12:26400256:CAG:C | acceptor_gain | 1.0000 |
| 12:26400256:CAGC:C | acceptor_gain | 1.0000 |
| 12:26400257:AG:A | acceptor_gain | 1.0000 |
AlphaMissense
17997 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:26340313:A:G | W2625R | 1.000 |
| 12:26340313:A:T | W2625R | 1.000 |
| 12:26398888:A:G | C2562R | 1.000 |
| 12:26398932:A:G | L2547P | 1.000 |
| 12:26398940:A:C | F2544L | 1.000 |
| 12:26398940:A:T | F2544L | 1.000 |
| 12:26398942:A:G | F2544L | 1.000 |
| 12:26398961:A:C | F2537L | 1.000 |
| 12:26398961:A:T | F2537L | 1.000 |
| 12:26398963:A:G | F2537L | 1.000 |
| 12:26398970:G:C | N2534K | 1.000 |
| 12:26398970:G:T | N2534K | 1.000 |
| 12:26398974:A:G | L2533P | 1.000 |
| 12:26399007:A:G | L2522P | 1.000 |
| 12:26400177:A:T | L2494H | 1.000 |
| 12:26400181:C:G | G2493R | 1.000 |
| 12:26400203:G:C | C2485W | 1.000 |
| 12:26400205:A:G | C2485R | 1.000 |
| 12:26400222:C:T | C2479Y | 1.000 |
| 12:26419184:A:C | S2325R | 1.000 |
| 12:26419184:A:T | S2325R | 1.000 |
| 12:26419186:T:G | S2325R | 1.000 |
| 12:26436305:A:G | W2229R | 1.000 |
| 12:26436305:A:T | W2229R | 1.000 |
| 12:26595529:T:A | K1439I | 1.000 |
| 12:26602428:A:G | L1207P | 1.000 |
| 12:26621200:A:G | W1129R | 1.000 |
| 12:26621200:A:T | W1129R | 1.000 |
| 12:26621229:A:G | L1119P | 1.000 |
| 12:26621238:A:G | L1116P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000002964 (12:26513384 T>C), RS1000005391 (12:26508856 G>A), RS1000014796 (12:26711503 C>A), RS1000016461 (12:26835011 A>C,G), RS1000017411 (12:26568834 C>A,T), RS1000018241 (12:26524833 T>C), RS1000022818 (12:26564979 G>A,T), RS1000025588 (12:26397058 G>A), RS1000031533 (12:26759109 T>C), RS1000047842 (12:26434629 T>A), RS1000051688 (12:26346867 G>A), RS1000058526 (12:26429529 C>T), RS1000059345 (12:26386927 C>A), RS1000061103 (12:26558377 A>C), RS1000062199 (12:26440521 T>C)
Disease associations
OMIM: gene MIM:600144 | disease phenotypes: MIM:106190, MIM:143890
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| isolated anhidrosis with normal sweat glands | Supportive | Autosomal recessive |
Mondo (3): isolated anhidrosis with normal sweat glands (MONDO:0007118), familial hypercholesterolemia (MONDO:0005439), intellectual disability (MONDO:0001071)
Orphanet (2): Isolated generalized anhidrosis with normal sweat glands (Orphanet:468666), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
5 total (5 of 5 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0001507 | Growth abnormality |
| HP:0001595 | Abnormal hair morphology |
| HP:0002046 | Heat intolerance |
| HP:0007459 | Generalized anhidrosis |
GWAS associations
84 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000072_1 | Amyotrophic lateral sclerosis | 3.000000e-06 |
| GCST000829_5 | Waist-hip ratio | 1.000000e-17 |
| GCST001283_1 | Renal cell carcinoma | 9.000000e-10 |
| GCST002361_5 | Smooth-surface caries | 3.000000e-06 |
| GCST002634_1 | Kashin-Beck disease | 1.000000e-11 |
| GCST002782_53 | Waist-to-hip ratio adjusted for body mass index | 6.000000e-15 |
| GCST002782_54 | Waist-to-hip ratio adjusted for body mass index | 4.000000e-16 |
| GCST002782_55 | Waist-to-hip ratio adjusted for body mass index | 5.000000e-15 |
| GCST002782_56 | Waist-to-hip ratio adjusted for body mass index | 2.000000e-15 |
| GCST003983_22 | Male-pattern baldness | 4.000000e-12 |
| GCST004064_4 | Waist-hip ratio | 2.000000e-11 |
| GCST004064_40 | Waist-hip ratio | 6.000000e-12 |
| GCST004505_62 | Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour) | 1.000000e-13 |
| GCST004505_63 | Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour) | 9.000000e-16 |
| GCST004507_15 | Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction) | 5.000000e-06 |
| GCST004508_10 | Waist-to-hip ratio adjusted for BMI in non-smokers | 2.000000e-06 |
| GCST004562_144 | Waist circumference adjusted for body mass index | 4.000000e-09 |
| GCST004562_243 | Waist circumference adjusted for body mass index | 1.000000e-09 |
| GCST004563_126 | Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction) | 8.000000e-09 |
| GCST004563_205 | Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction) | 7.000000e-09 |
| GCST004563_21 | Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction) | 2.000000e-08 |
| GCST004564_217 | Waist circumference adjusted for BMI in active individuals | 3.000000e-06 |
| GCST004564_218 | Waist circumference adjusted for BMI in active individuals | 1.000000e-07 |
| GCST004564_219 | Waist circumference adjusted for BMI in active individuals | 2.000000e-06 |
| GCST004567_10 | Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction) | 4.000000e-16 |
| GCST004567_102 | Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction) | 2.000000e-16 |
| GCST004567_29 | Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction) | 6.000000e-17 |
| GCST004567_91 | Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction) | 4.000000e-18 |
| GCST004576_101 | Waist-to-hip ratio adjusted for body mass index | 6.000000e-18 |
| GCST004576_138 | Waist-to-hip ratio adjusted for body mass index | 4.000000e-19 |
EFO canonical traits (21, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004343 | waist-hip ratio |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0004318 | smoking behavior |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0008002 | physical activity measurement |
| EFO:0004344 | birth weight |
| EFO:0008007 | age at assessment |
| EFO:0008343 | sex interaction measurement |
| EFO:0004530 | triglyceride measurement |
| EFO:0004574 | total cholesterol measurement |
| EFO:0004611 | low density lipoprotein cholesterol measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0009443 | BRCAX breast cancer |
| EFO:0009270 | heel bone mineral density |
| EFO:0005939 | parental genotype effect measurement |
| EFO:0006939 | cup-to-disc ratio measurement |
| EFO:0004531 | urate measurement |
| EFO:0004587 | lymphocyte count |
| EFO:0007985 | platelet crit |
| EFO:0004533 | alkaline phosphatase measurement |
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2111451 (PROTEIN FAMILY)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: lgic — IP3 receptors
ChEMBL bioactivities
9 potent at pChembl≥5 of 12 total, top 9 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.35 | IC50 | 4.43 | nM | INS(1,4,5)P3 |
| 7.85 | IC50 | 14 | nM | CHEMBL3349691 |
| 7.58 | IC50 | 26.5 | nM | CHEMBL3349691 |
| 7.47 | IC50 | 33.5 | nM | INS(1,4,5)P3 |
| 7.28 | IC50 | 52 | nM | INS(1,4,5)P3 |
| 6.89 | EC50 | 130 | nM | CHEMBL1161456 |
| 6.76 | IC50 | 172 | nM | CHEMBL1160286 |
| 6.70 | IC50 | 200 | nM | INS(1,4,5)P3 |
| 6.39 | EC50 | 410 | nM | CHEMBL1161466 |
PubChem BioAssay actives
6 with measured affinity, of 6 total; 3 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| [(1R,2S,3R,4R,5S,6R)-2,3,5-trihydroxy-4,6-diphosphonooxycyclohexyl] dihydrogen phosphate | 92895: The compound was tested for inhibitory activity against IInositol 1,4,5-trisphosphate receptor in SH-SY5Y cell line | ic50 | 0.0044 | uM |
| [(1S,2R,4R,5R)-2,4-dihydroxy-3,5,6-triphosphonooxycyclohexyl] dihydrogen phosphate | 92896: The compound was tested for inhibitory activity against Inositol 1,4,5-trisphosphate receptor in SH-SY5Y cell line | ic50 | 0.0140 | uM |
| (2,5-dihydroxy-3,4,6-triphosphonooxycyclohexyl)oxy-trihydroxyphosphanium | 92898: The compound was tested for inhibitory activity against Inositol 1,4,5-trisphosphate receptor in L15 cell line | ic50 | 0.1720 | uM |
CTD chemical–gene interactions
79 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | decreases methylation, affects methylation, decreases expression | 8 |
| Valproic Acid | affects cotreatment, increases expression, decreases expression, decreases methylation | 7 |
| Tretinoin | affects expression, increases expression | 4 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| potassium chromate(VI) | decreases expression, affects cotreatment | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| perfluorooctane sulfonic acid | affects expression, affects cotreatment, increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Air Pollutants | decreases expression, increases abundance | 2 |
| Cisplatin | affects cotreatment, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| Aflatoxin B1 | decreases expression, decreases methylation | 2 |
| Particulate Matter | affects response to substance, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| ammonium 2,3,3,3-tetrafluoro-2-(heptafluoropropoxy)-propanoate | affects cotreatment, affects expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| uranyl acetate | increases expression | 1 |
| bisphenol A | affects cotreatment, decreases methylation | 1 |
| beta-lapachone | decreases expression | 1 |
| sodium bichromate | decreases expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases abundance, increases methylation | 1 |
| 11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acid | affects methylation, increases abundance | 1 |
| sodium arsenite | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| perfluorooctanoic acid | affects cotreatment, affects expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| periodate-oxidized adenosine | affects expression | 1 |
ChEMBL screening assays
8 unique, capped per target: 7 binding, 1 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL697190 | Binding | Compound was evaluated for its ability to inhibit Inositol phosphorylation | Total synthesis of L-2,2-difluoro-2-deoxy-MYO-inositol 1,4,5-trisphosphate, a potent inhibitor of the enzymes of d-MYO-inositol 1,4,5-trisphosphate metabolism — Bioorg Med Chem Lett |
| CHEMBL699700 | Functional | Compound was evaluated for its effective dose to inhibit the calcium release as a measure of affinity for Inositol 1,4,5-trisphosphate receptor | Total synthesis of L-2,2-difluoro-2-deoxy-MYO-inositol 1,4,5-trisphosphate, a potent inhibitor of the enzymes of d-MYO-inositol 1,4,5-trisphosphate metabolism — Bioorg Med Chem Lett |
Cellosaurus cell lines
12 cell lines: 7 cancer cell line, 5 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D7SV | Ubigene A-549 ITPR2 KO | Cancer cell line | Male |
| CVCL_D8NM | Ubigene HCT 116 ITPR2 KO | Cancer cell line | Male |
| CVCL_D9HM | Ubigene HEK293 ITPR2 KO | Transformed cell line | Female |
| CVCL_E0FR | Ubigene HeLa ITPR2 KO | Cancer cell line | Female |
| CVCL_HB82 | HEK-3KO | Transformed cell line | Female |
| CVCL_HB83 | HEKR1 | Transformed cell line | Female |
| CVCL_HB85 | HEKR2R1 | Transformed cell line | Female |
| CVCL_HB86 | HEKR2R3 | Transformed cell line | Female |
| CVCL_ST60 | HAP1 ITPR2 (-) 1 | Cancer cell line | Male |
| CVCL_ST61 | HAP1 ITPR2 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00655265 | PHASE4 | COMPLETED | A Study of the Safety and Efficacy of Patients With Familial Hypercholesterolaemia Taking Colesevelam as add-on Therapy to Their Existing Medication |
| NCT00916643 | PHASE4 | COMPLETED | Low-Density Lipoprotein (LDL) Apheresis Using H.E.L.P. Therapy |
| NCT03331666 | PHASE4 | TERMINATED | Impact of LDL-cholesterol Lowering on Platelet Activation |
| NCT05465278 | PHASE4 | COMPLETED | Alirocumab and Plaque Burden In Familial Hypercholesterolaemia |
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT00355615 | PHASE3 | COMPLETED | PLUTO: Pediatric Lipid-redUction Trial of rOsuvastatin |
| NCT00552097 | PHASE3 | COMPLETED | Effect of Ezetimibe Plus Simvastatin Versus Simvastatin Alone on Atherosclerosis in the Carotid Artery (ENHANCE)(P02578) |
| NCT00607373 | PHASE3 | COMPLETED | Study to Assess the Safety and Efficacy of ISIS 301012 (Mipomersen) in Homozygous Familial Hypercholesterolemia |
| NCT00694109 | PHASE3 | COMPLETED | An Open-label Extension Study to Assess the Long-term Safety and Efficacy of ISIS 301012 (Mipomersen) in Patients With Familial Hypercholesterolemia or Severe-Hypercholesterolemia |
| NCT00827606 | PHASE3 | COMPLETED | Atorvastatin Three Year Pediatric Study |
| NCT00943306 | PHASE3 | COMPLETED | Long Term, Follow-on Study of Lomitapide in Patients With Homozygous Familial Hypercholesterolemia |
| NCT01524289 | PHASE3 | COMPLETED | Study to Assess the Tolerability and Efficacy of Anacetrapib (MK-0859) Co-Administered With Statin in Participants With Heterozygous Familial Hypercholesterolemia (MK-0859-020) |
| NCT01813006 | PHASE3 | COMPLETED | Effect of Omega-3 Fatty Acid on Endothelial Function |
| NCT01841684 | PHASE3 | TERMINATED | Efficacy and Tolerability of Anacetrapib Added to Ongoing Lipid-Lowering Therapy in Adult Participants With Homozygous Familial Hypercholesterolemia (HoFH) (MK-0859-042) |
| NCT02624869 | PHASE3 | COMPLETED | Safety, Tolerability and Efficacy of Evolocumab (AMG 145) in Children With Inherited Elevated Low-density Lipoprotein Cholesterol (Familial Hypercholesterolemia) |
| NCT02748057 | PHASE3 | COMPLETED | A Clinical Trial to Assess the Long Term Safety and Tolerability of MK-0653H in Japanese Participants With Hypercholesterolemia (MK-0653H-833) |
| NCT03884452 | PHASE3 | COMPLETED | Ezetimibe (SCH 58235) Taken With Either Atorvastatin or Simvastatin in Participants With Familial Hypercholesterolemia (MK-0653-018) |
| NCT04798430 | PHASE3 | ENROLLING_BY_INVITATION | Long-term Efficacy and Safety of OLE LIB003 in HoFH, HeFH, and High-risk CVD Patients Requiring Further LDL-C Reduction |
| NCT05142722 | PHASE3 | COMPLETED | Randomized Study to Evaluate the Effect of Obicetrapib on Top of Maximum Tolerated Lipid-Modifying Therapies |
| NCT05238519 | PHASE3 | ACTIVE_NOT_RECRUITING | Improved Diagnosis of Familial Hypercholesterolemia Across the Northland (ID-FH) |
| NCT05425745 | PHASE3 | COMPLETED | Evaluate the Effect of Obicetrapib in Patients With HeFH on Top of Maximum Tolerated Lipid-Modifying Therapies. |
| NCT05952856 | PHASE3 | COMPLETED | A Study of Enlicitide Decanoate (MK-0616 Oral PCSK9 Inhibitor) in Adults With Hypercholesterolemia (MK-0616-013) CORALreef Lipids |
| NCT05952869 | PHASE3 | COMPLETED | A Study of Enlicitide Decanoate (MK-0616 Oral PCSK9 Inhibitor) in Adults With Heterozygous Familial Hypercholesterolemia (MK-0616-017/CORALreef HeFH) |
| NCT06005597 | PHASE3 | COMPLETED | Study of Obicetrapib & Ezetimibe Fixed Dose Combination on Top of Maximum Tolerated Lipid-Modifying Therapies |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT00079846 | PHASE2 | TERMINATED | Implitapide in Patients With Homozygous Familial Hypercholesterolemia (HoFH) on Maximal Concurrent Lipid-Lowering Therapy |
| NCT00079859 | PHASE2 | TERMINATED | Implitapide in Patients With Heterozygous Familial Hypercholesterolemia (HeFH) on Maximal Concurrent Lipid-Lowering Therapy |
| NCT00477594 | PHASE2 | COMPLETED | Open Label Extension of ISIS 301012 (Mipomersen) to Treat Familial Hypercholesterolemia |
| NCT00751608 | PHASE2 | WITHDRAWN | Effect of APL180 on Endothelial Function in Familial Hypercholesterolemia Patients |
| NCT02597127 | PHASE2 | COMPLETED | Trial to Evaluate the Effect of ALN-PCSSC Treatment on Low Density Lipoprotein Cholesterol (LDL-C) |
| NCT03060577 | PHASE2 | COMPLETED | An Extension Trial of Inclisiran in Participants With Cardiovascular Disease and High Cholesterol |
| NCT04455581 | PHASE2 | UNKNOWN | A Study to Determine the Safety, Tolerability, and Efficacy of SHR-1209 in Patients With Familial Hypercholesterolemia |
| NCT04941599 | PHASE2 | RECRUITING | 2-Hydroxybenzylamine (2-HOBA) to Reduce HDL Modification and Improve HDL Function in Familial Hypercholesterolemia (FH) |
| NCT05261126 | PHASE2 | COMPLETED | A Study of the Efficacy and Safety of Enclitide Chloride (MK-0616 Oral PCSK9 Inhibitor) in Adults With Hypercholesterolemia (MK-0616-008) |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
Related Atlas pages
- Associated diseases: isolated anhidrosis with normal sweat glands
- Targeted by drugs: Calcium
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): familial hypercholesterolemia, isolated anhidrosis with normal sweat glands, Kashin-Beck disease, renal cell carcinoma, smooth surface dental caries