JAKMIP1-DT

Summary

JAKMIP1-DT (JAKMIP1 divergent transcript, HGNC:27728) is a unprocessed pseudogene on chromosome 4p16.1.

At a glance

• Gene type: non-coding (transcribed_unprocessed_pseudogene) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27728
Approved symbol	JAKMIP1-DT
Name	JAKMIP1 divergent transcript
Location	4p16.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249896
Ensembl biotype	transcribed_unprocessed_pseudogene
Entrez	285484
RNAcentral	URS000075CD0F — lncRNA, 1485 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 transcribed_unprocessed_pseudogene

ENST00000636704

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000636704 — 3 exons

Exon	Start	End
ENSE00002023394	6228017	6228139
ENSE00003792775	6229789	6229867
ENSE00003794902	6227614	6227653

Expression profiles

Bgee: expression breadth broad, 78 present calls, max score 93.27.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1768 / max 9.8036, expressed in 82 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
46767	0.1768	82

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
thymus	UBERON:0002370	93.27	silver quality
quadriceps femoris	UBERON:0001377	82.63	gold quality
cerebellar vermis	UBERON:0004720	81.68	gold quality
superior frontal gyrus	UBERON:0002661	77.95	gold quality
prefrontal cortex	UBERON:0000451	77.07	gold quality
nucleus accumbens	UBERON:0001882	76.52	gold quality
frontal cortex	UBERON:0001870	75.84	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	74.12	gold quality
anterior cingulate cortex	UBERON:0009835	74.00	gold quality
cerebral cortex	UBERON:0000956	73.92	gold quality
right frontal lobe	UBERON:0002810	73.77	gold quality
Brodmann (1909) area 9	UBERON:0013540	73.01	gold quality
putamen	UBERON:0001874	72.10	gold quality
caudate nucleus	UBERON:0001873	71.91	gold quality
primary visual cortex	UBERON:0002436	71.60	gold quality
Ammon’s horn	UBERON:0001954	70.74	gold quality
islet of Langerhans	UBERON:0000006	70.58	gold quality
temporal lobe	UBERON:0001871	70.57	gold quality
amygdala	UBERON:0001876	70.34	gold quality
hypothalamus	UBERON:0001898	69.32	gold quality
brain	UBERON:0000955	69.26	gold quality
cortical plate	UBERON:0005343	68.26	gold quality
substantia nigra	UBERON:0002038	65.01	gold quality
adenohypophysis	UBERON:0002196	64.23	gold quality
pituitary gland	UBERON:0000007	64.22	gold quality
spinal cord	UBERON:0002240	57.88	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	57.82	gold quality
ganglionic eminence	UBERON:0004023	55.00	gold quality
right hemisphere of cerebellum	UBERON:0014890	54.92	gold quality
cerebellum	UBERON:0002037	54.30	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.