JAKMIP1
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Also known as MARLIN1JAMIP1GababrbpFLJ31564
Summary
JAKMIP1 (janus kinase and microtubule interacting protein 1, HGNC:26460) is a protein-coding gene on chromosome 4p16.1, encoding Janus kinase and microtubule-interacting protein 1 (Q96N16). Associates with microtubules and may play a role in the microtubule-dependent transport of the GABA-B receptor.
Enables GABA receptor binding activity and RNA binding activity. Involved in cognition. Located in membrane. Part of ribonucleoprotein complex.
Source: NCBI Gene 152789 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder (Moderate, GenCC)
- GWAS associations: 4
- Clinical variants (ClinVar): 105 total — 1 pathogenic
- MANE Select transcript:
NM_001099433
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26460 |
| Approved symbol | JAKMIP1 |
| Name | janus kinase and microtubule interacting protein 1 |
| Location | 4p16.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MARLIN1, JAMIP1, Gababrbp, FLJ31564 |
| Ensembl gene | ENSG00000152969 |
| Ensembl biotype | protein_coding |
| OMIM | 611195 |
| Entrez | 152789 |
Gene structure
Transcript identifiers
Ensembl transcripts: 20 — 12 protein_coding, 5 retained_intron, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000282924, ENST00000409021, ENST00000409371, ENST00000409831, ENST00000410077, ENST00000457227, ENST00000473053, ENST00000637373, ENST00000700566, ENST00000700567, ENST00000700568, ENST00000700569, ENST00000700570, ENST00000700571, ENST00000700572, ENST00000700573, ENST00000700574, ENST00000700575, ENST00000700576, ENST00000700577
RefSeq mRNA: 4 — MANE Select: NM_001099433
NM_001099433, NM_001306133, NM_001306134, NM_144720
CCDS: CCDS3385, CCDS47005, CCDS77897
Canonical transcript exons
ENST00000409021 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001080261 | 6060424 | 6060507 |
| ENSE00001080262 | 6062312 | 6062440 |
| ENSE00001080264 | 6056697 | 6056759 |
| ENSE00001577294 | 6042159 | 6042227 |
| ENSE00001578825 | 6050578 | 6050679 |
| ENSE00001582181 | 6049819 | 6049872 |
| ENSE00001586359 | 6054050 | 6054148 |
| ENSE00001588119 | 6040639 | 6040716 |
| ENSE00001588933 | 6035904 | 6036107 |
| ENSE00001589348 | 6029716 | 6029781 |
| ENSE00001725902 | 6048857 | 6048922 |
| ENSE00001788612 | 6105473 | 6105967 |
| ENSE00002291794 | 6112722 | 6112997 |
| ENSE00003532799 | 6064880 | 6065008 |
| ENSE00003551910 | 6084846 | 6084965 |
| ENSE00003577773 | 6078939 | 6078998 |
| ENSE00003626353 | 6081609 | 6081755 |
| ENSE00003656343 | 6080172 | 6080312 |
| ENSE00003661465 | 6085420 | 6085629 |
| ENSE00003890503 | 6026199 | 6026278 |
| ENSE00003894483 | 6200253 | 6200549 |
Expression profiles
Bgee: expression breadth ubiquitous, 174 present calls, max score 94.84.
FANTOM5 (CAGE): breadth broad, TPM avg 4.0134 / max 158.6347, expressed in 375 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 51233 | 4.0134 | 375 |
| 51234 | 0.4597 | 171 |
| 51232 | 0.0561 | 31 |
Top tissues by expression
253 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| caudate nucleus | UBERON:0001873 | 94.84 | gold quality |
| nucleus accumbens | UBERON:0001882 | 94.80 | gold quality |
| putamen | UBERON:0001874 | 94.75 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 94.55 | gold quality |
| prefrontal cortex | UBERON:0000451 | 93.64 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 93.54 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 93.54 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 93.10 | gold quality |
| frontal cortex | UBERON:0001870 | 92.84 | gold quality |
| frontal lobe | UBERON:0016525 | 92.84 | gold quality |
| entorhinal cortex | UBERON:0002728 | 92.69 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 92.68 | gold quality |
| postcentral gyrus | UBERON:0002581 | 92.57 | gold quality |
| telencephalon | UBERON:0001893 | 92.52 | gold quality |
| neocortex | UBERON:0001950 | 92.30 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 92.30 | gold quality |
| primary visual cortex | UBERON:0002436 | 92.29 | gold quality |
| cerebral cortex | UBERON:0000956 | 92.25 | gold quality |
| parietal lobe | UBERON:0001872 | 91.93 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 91.92 | gold quality |
| right frontal lobe | UBERON:0002810 | 91.47 | gold quality |
| Ammon’s horn | UBERON:0001954 | 91.29 | gold quality |
| temporal lobe | UBERON:0001871 | 91.20 | gold quality |
| forebrain | UBERON:0001890 | 91.12 | gold quality |
| hypothalamus | UBERON:0001898 | 91.07 | gold quality |
| endothelial cell | CL:0000115 | 90.74 | gold quality |
| amygdala | UBERON:0001876 | 90.73 | gold quality |
| occipital lobe | UBERON:0002021 | 90.49 | gold quality |
| cortical plate | UBERON:0005343 | 90.32 | gold quality |
| brain | UBERON:0000955 | 88.68 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-5061 | yes | 6.18 |
| E-ANND-3 | no | 2.72 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
38 targeting JAKMIP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-3912-5P | 99.95 | 66.11 | 925 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-302A-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302B-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302C-3P | 99.89 | 71.20 | 1778 |
| HSA-MIR-302D-3P | 99.89 | 71.25 | 1777 |
| HSA-MIR-373-3P | 99.84 | 70.68 | 1668 |
| HSA-MIR-520E-3P | 99.84 | 70.55 | 1698 |
| HSA-MIR-372-3P | 99.83 | 70.58 | 1691 |
| HSA-MIR-520A-3P | 99.83 | 70.59 | 1687 |
| HSA-MIR-520B-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520C-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520D-3P | 99.83 | 70.78 | 1676 |
| HSA-MIR-944 | 99.82 | 70.85 | 3042 |
| HSA-MIR-548AJ-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548F-5P | 99.78 | 71.02 | 3093 |
| HSA-MIR-548G-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548X-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-34B-5P | 99.78 | 67.56 | 1175 |
Literature-anchored findings (GeneRIF, showing 5)
- Marlin-1 functions to regulate the cellular levels of GABA(B) R2 subunits, which may have significant effects on the production of functional GABA(B) receptor heterodimers (PMID:14718537)
- Marlin1 has a role in cell polarization, segregation of signaling complexes, and vesicle traffic, some of which may involve Jak tyrosine kinases (PMID:15277531)
- We have identified four new transcripts of 2975 bp, 1743 bp, 2189 bp and 2420 bp respectively, named Jakmip1B, Jakmip1C, Jakmip1D and Jakmip1E (PMID:17761393)
- Jakmip1 is a novel effector memory gene that restrains T cell-mediated cytotoxicity. (PMID:18941173)
- JAKMIP1 associates with and possibly contributes to the Wnt/beta-catenin pathway activity through its influence on downstream Wnt target proteins, including beta-catenin. (PMID:23481296)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | jakmip1 | ENSDARG00000076090 |
| mus_musculus | Jakmip1 | ENSMUSG00000063646 |
| rattus_norvegicus | Jakmip1 | ENSRNOG00000004998 |
Paralogs (2): JAKMIP2 (ENSG00000176049), JAKMIP3 (ENSG00000188385)
Protein
Protein identifiers
Janus kinase and microtubule-interacting protein 1 — Q96N16 (reviewed: Q96N16)
Alternative names: GABA-B receptor-binding protein, Multiple alpha-helices and RNA-linker protein 1
All UniProt accessions (8): Q96N16, A0A1B0GUE0, A0A8V8TPV4, A0A8V8TQE7, A0A8V8TR09, A0A8V8TR11, A0A8V8TRB8, F2Z2K5
UniProt curated annotations — full annotation on UniProt →
Function. Associates with microtubules and may play a role in the microtubule-dependent transport of the GABA-B receptor. May play a role in JAK1 signaling and regulate microtubule cytoskeleton rearrangements.
Subunit / interactions. Homodimer. Forms a complex with GABBR1 and KIF5B/kinesin-1. Interacts with JAK1 and TYK2.
Subcellular location. Cytoplasm. Cytoskeleton. Membrane.
Tissue specificity. Predominantly expressed in neural tissues and lymphoid cells (at protein level). Isoform 2, isoform 3 and isoform 4 are specifically expressed in brain and retina. Isoform 1 and isoform 5 are also detected in liver, lung and skeletal muscle. Also detected in testis and to a lower extent spleen and intestine.
Miscellaneous. Dubious isoform produced through aberrant splice sites. Dubious isoform produced through aberrant splice sites.
Similarity. Belongs to the JAKMIP family.
Isoforms (7)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96N16-1 | 1, Jakmip1A | yes |
| Q96N16-2 | 2, Jakmip1B | |
| Q96N16-3 | 3, Jakmip1C | |
| Q96N16-4 | 4, Jakmip1D | |
| Q96N16-5 | 5, Jakmip1E | |
| Q96N16-6 | 6 | |
| Q96N16-7 | 7 |
RefSeq proteins (4): NP_001092903, NP_001293062, NP_001293063, NP_653321 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR024836 | JAKMIP | Family |
| IPR031994 | JAKMIP_C | Domain |
Pfam: PF16034
UniProt features (23 total): splice variant 9, region of interest 4, coiled-coil region 3, modified residue 2, sequence variant 2, chain 1, sequence conflict 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96N16-F1 | 81.59 | 0.59 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 470, 382
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 100 (showing top):
GOBP_COGNITION, TGCGCANK_UNKNOWN, TGCACTT_MIR519C_MIR519B_MIR519A, AREB6_03, MODULE_379, chr4p16, MODULE_242, GOMF_SIGNALING_RECEPTOR_BINDING, TGCCTTA_MIR124A, ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN, TTTGCAC_MIR19A_MIR19B, TGGAAA_NFAT_Q4_01, LEIN_NEURON_MARKERS, MODULE_104, GOCC_RIBONUCLEOPROTEIN_COMPLEX
GO Biological Process (2): protein transport (GO:0015031), cognition (GO:0050890)
GO Molecular Function (5): RNA binding (GO:0003723), microtubule binding (GO:0008017), kinase binding (GO:0019900), GABA receptor binding (GO:0050811), protein binding (GO:0005515)
GO Cellular Component (5): microtubule (GO:0005874), membrane (GO:0016020), ribonucleoprotein complex (GO:1990904), cytoplasm (GO:0005737), cytoskeleton (GO:0005856)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| transport | 1 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| nervous system process | 1 |
| nucleic acid binding | 1 |
| tubulin binding | 1 |
| enzyme binding | 1 |
| signaling receptor binding | 1 |
| binding | 1 |
| microtubule cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| protein-containing complex | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
552 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| JAKMIP1 | TYK2 | P29597 | 794 |
| JAKMIP1 | GABBR2 | O75899 | 744 |
| JAKMIP1 | JAK1 | P23458 | 669 |
| JAKMIP1 | GPR155 | Q7Z3F1 | 521 |
| JAKMIP1 | PTK2 | Q05397 | 468 |
| JAKMIP1 | RDX | P35241 | 410 |
| JAKMIP1 | EZR | P15311 | 405 |
| JAKMIP1 | MSN | P26038 | 388 |
| JAKMIP1 | SPATA45 | Q537H7 | 365 |
| JAKMIP1 | CYFIP1 | Q7L576 | 365 |
| JAKMIP1 | OR6K3 | Q8NGY3 | 363 |
| JAKMIP1 | SMIM43 | Q4W5P6 | 348 |
| JAKMIP1 | SERINC2 | Q96SA4 | 319 |
| JAKMIP1 | NT5C1B | Q96P26 | 318 |
| JAKMIP1 | POM121L2 | Q96KW2 | 296 |
IntAct
87 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HTT | JAKMIP1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| JAKMIP1 | rep | psi-mi:“MI:0915”(physical association) | 0.660 |
| JAKMIP1 | ZNHIT2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JAKMIP1 | SCNM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TSGA10IP | JAKMIP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JAKMIP1 | MRPL11 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DDX6 | JAKMIP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| BLK | JAKMIP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| IL16 | JAKMIP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| USP2 | JAKMIP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JAKMIP1 | ENKD1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| YES1 | JAKMIP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PSMB1 | JAKMIP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JAKMIP1 | CBX8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ARK2N | JAKMIP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MCRS1 | JAKMIP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KSR2 | POLR3A | psi-mi:“MI:0914”(association) | 0.530 |
| rep | TBKBP1 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (44): JAKMIP1 (Affinity Capture-MS), JAKMIP1 (Affinity Capture-Western), JAKMIP1 (Reconstituted Complex), JAKMIP1 (Affinity Capture-MS), JAKMIP1 (Two-hybrid), JAKMIP1 (Two-hybrid), JAKMIP1 (Two-hybrid), JAKMIP1 (Two-hybrid), JAKMIP1 (Two-hybrid), JAKMIP1 (Two-hybrid), JAKMIP1 (Two-hybrid), SCNM1 (Two-hybrid), IL16 (Two-hybrid), ZNHIT2 (Two-hybrid), MRPL11 (Two-hybrid)
ESM2 similar proteins: A0A287B8J2, A6QR54, A8IQT2, A8WUP2, C5E2E7, C9ZN16, G5ECG0, O08788, O16844, O48791, O55156, P13496, P28023, P35458, P45970, P54623, Q01397, Q14203, Q17695, Q23529, Q292S8, Q2KN93, Q2KN94, Q2KN95, Q2KN96, Q2KN97, Q2KN98, Q2KN99, Q2KNA0, Q2KNA1, Q3SWS9, Q585H6, Q5B993, Q5DTN8, Q5M775, Q5SXY1, Q5VZ66, Q69YQ0, Q6PCJ1, Q75EN7
Diamond homologs: A6QR54, Q3SWS9, Q5DTN8, Q5VZ66, Q8BVL9, Q96AA8, Q96N16
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| JAKMIP1 | “up-regulates quantity by stabilization” | TUBB | binding |
| KIF5B | “up-regulates activity” | JAKMIP1 | relocalization |
| JAKMIP1 | “up-regulates quantity” | GABBR1 |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 55 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Activation of BAD and translocation to mitochondria | 5 | 90.6× | 2e-07 |
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 5 | 80.0× | 3e-07 |
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 5 | 80.0× | 3e-07 |
| Activation of BH3-only proteins | 5 | 59.1× | 1e-06 |
| RHO GTPases activate PKNs | 5 | 37.8× | 7e-06 |
| Intrinsic Pathway for Apoptosis | 5 | 34.9× | 8e-06 |
| Translocation of SLC2A4 (GLUT4) to the plasma membrane | 8 | 29.4× | 8e-08 |
| Apoptosis | 6 | 24.0× | 6e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| microtubule cytoskeleton organization | 7 | 16.6× | 9e-05 |
| intracellular protein localization | 6 | 12.3× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
105 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 59 |
| Likely benign | 11 |
| Benign | 11 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 254206 | NM_001099433.2(JAKMIP1):c.1756G>C (p.Asp586His) | Pathogenic |
SpliceAI
3015 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:6060419:CTCA:C | donor_loss | 1.0000 |
| 4:6060420:TCAC:T | donor_loss | 1.0000 |
| 4:6060421:CACC:C | donor_loss | 1.0000 |
| 4:6060423:C:T | donor_loss | 1.0000 |
| 4:6060503:CGAGT:C | acceptor_gain | 1.0000 |
| 4:6060504:GAGT:G | acceptor_gain | 1.0000 |
| 4:6060506:GT:G | acceptor_gain | 1.0000 |
| 4:6060506:GTC:G | acceptor_loss | 1.0000 |
| 4:6060507:TCTGG:T | acceptor_loss | 1.0000 |
| 4:6060508:C:CC | acceptor_gain | 1.0000 |
| 4:6060508:C:T | acceptor_loss | 1.0000 |
| 4:6062310:AC:A | donor_gain | 1.0000 |
| 4:6062311:CC:C | donor_gain | 1.0000 |
| 4:6062439:GC:G | acceptor_gain | 1.0000 |
| 4:6062440:CC:C | acceptor_gain | 1.0000 |
| 4:6062441:C:CC | acceptor_gain | 1.0000 |
| 4:6062444:CACA:C | acceptor_gain | 1.0000 |
| 4:6062446:C:CT | acceptor_gain | 1.0000 |
| 4:6062447:A:AC | acceptor_gain | 1.0000 |
| 4:6062447:A:C | acceptor_gain | 1.0000 |
| 4:6062450:A:AC | acceptor_gain | 1.0000 |
| 4:6062450:A:C | acceptor_gain | 1.0000 |
| 4:6064874:GCTT:G | donor_loss | 1.0000 |
| 4:6064875:CTTA:C | donor_loss | 1.0000 |
| 4:6064876:TTA:T | donor_loss | 1.0000 |
| 4:6064877:TACA:T | donor_loss | 1.0000 |
| 4:6064878:A:AC | donor_gain | 1.0000 |
| 4:6064878:ACA:A | donor_loss | 1.0000 |
| 4:6064879:C:CC | donor_gain | 1.0000 |
| 4:6064879:C:CG | donor_loss | 1.0000 |
AlphaMissense
5450 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:6054068:G:C | F596L | 1.000 |
| 4:6054068:G:T | F596L | 1.000 |
| 4:6054069:A:G | F596S | 1.000 |
| 4:6054070:A:G | F596L | 1.000 |
| 4:6054078:A:G | L593P | 1.000 |
| 4:6054054:A:G | L601P | 0.999 |
| 4:6054060:A:G | L599P | 0.999 |
| 4:6054069:A:C | F596C | 0.999 |
| 4:6054070:A:C | F596V | 0.999 |
| 4:6062358:A:G | L505P | 0.999 |
| 4:6062379:A:G | L498P | 0.999 |
| 4:6062400:A:G | L491P | 0.999 |
| 4:6084889:A:G | L304P | 0.999 |
| 4:6084910:A:G | L297P | 0.999 |
| 4:6054065:T:A | R597S | 0.998 |
| 4:6054065:T:G | R597S | 0.998 |
| 4:6054066:C:A | R597I | 0.998 |
| 4:6054066:C:G | R597T | 0.998 |
| 4:6054070:A:T | F596I | 0.998 |
| 4:6054087:T:G | Q590P | 0.998 |
| 4:6062361:A:G | L504P | 0.998 |
| 4:6062373:C:G | R500P | 0.998 |
| 4:6062389:A:C | Y495D | 0.998 |
| 4:6084847:A:G | L318P | 0.998 |
| 4:6054058:C:T | E600K | 0.997 |
| 4:6062365:C:G | A503P | 0.997 |
| 4:6062391:T:A | E494V | 0.997 |
| 4:6105474:A:G | L208P | 0.997 |
| 4:6105549:A:G | L183P | 0.997 |
| 4:6054056:T:A | E600D | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000000893 (4:6038600 C>A), RS10000296 (4:6106038 T>G), RS1000034381 (4:6089703 C>T), RS1000034717 (4:6124920 T>C), RS1000043551 (4:6055636 T>C), RS1000044570 (4:6108912 G>A,T), RS1000063394 (4:6140427 A>C), RS1000085247 (4:6124598 C>T), RS1000112854 (4:6085083 C>A,T), RS1000115562 (4:6032148 T>C), RS1000133038 (4:6197509 A>G), RS10001432 (4:6086146 C>T), RS1000153319 (4:6100244 C>A,T), RS1000184667 (4:6132946 G>C), RS1000185313 (4:6084794 G>A,C)
Disease associations
OMIM: gene MIM:611195 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder | Moderate | Autosomal dominant |
Mondo (2): intellectual disability (MONDO:0001071), neurodevelopmental disorder (MONDO:0700092)
Orphanet (1): NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001520_13 | Response to angiotensin II receptor blocker therapy | 2.000000e-06 |
| GCST002951_5 | Response to zileuton treatment in asthma (FEV1 change interaction) | 5.000000e-07 |
| GCST006281_5 | Coronary artery disease in type 1 diabetes | 5.000000e-06 |
| GCST011624_7 | Tau burden | 4.000000e-07 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005921 | FEV change measurement |
| EFO:0004760 | t-tau measurement |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
20 total (human), top 20 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases methylation | 2 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | affects cotreatment, decreases methylation | 1 |
| ethyl-p-hydroxybenzoate | decreases expression | 1 |
| terbufos | increases methylation | 1 |
| trichostatin A | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| pentanal | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Aldehydes | increases expression | 1 |
| Benzo(a)pyrene | affects methylation, increases methylation | 1 |
| Carbamazepine | affects expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Fonofos | increases methylation | 1 |
| Methapyrilene | increases methylation | 1 |
| Parathion | increases methylation | 1 |
Clinical trials (associated diseases)
390 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT01783041 | PHASE2/PHASE3 | COMPLETED | Effect of Early L-Carnitine Supplementation on Neurodevelopmental Outcomes in Very Preterm Infants |
| NCT05767385 | PHASE2/PHASE3 | RECRUITING | Fetal Cerebrovascular Autoregulation in Congenital Heart Disease and Association With Neonatal Neurobehavior |
| NCT05675098 | EARLY_PHASE1 | NOT_YET_RECRUITING | Central Nervous System Stimulants and Physical Function in Children With Cerebral Palsy |
| NCT00783783 | Not specified | COMPLETED | CYP2D6 Pharmacogenetics in Risperidone-Treated Children |
| NCT01778504 | Not specified | RECRUITING | Studying Childhood-onset Behavioral, Psychiatric, and Developmental Disorders |
| NCT01850784 | Not specified | UNKNOWN | High Energy Formula Feeding in Infants With Congenital Heart Disease |
| NCT01922791 | Not specified | COMPLETED | Nutrition and Pregnancy Intervention Study |
| NCT01942525 | Not specified | UNKNOWN | Influence of Intrauterine Growth Restriction on Amplitude-integrated EEG in Preterm Infants |
| NCT02003170 | Not specified | COMPLETED | Etiology and Early Diagnosis of Neurodevelopmental Disorders |
| NCT02118649 | Not specified | ACTIVE_NOT_RECRUITING | Enhancing Behavior and Brain Response to Visual Targets Using a Computer Game |
| NCT02557191 | Not specified | TERMINATED | Biomarkers, Neurodevelopment and Preterm Infants |
| NCT02690675 | Not specified | COMPLETED | Iron Supplement Effect on Child Development |
| NCT02694003 | Not specified | COMPLETED | Better Nights, Better Days for Children With Neurodevelopment Disorders |
| NCT02792894 | Not specified | COMPLETED | Family Networks (FaNs) for Children With Developmental Disorders and Delays |
Related Atlas pages
- Associated diseases: neurodevelopmental disorder