JARID2-DT

Summary

JARID2-DT (JARID2 divergent transcript, HGNC:55240) is a long non-coding RNA gene on chromosome 6p22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55240
Approved symbol	JARID2-DT
Name	JARID2 divergent transcript
Location	6p22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271888
Ensembl biotype	lncRNA
Entrez	118597839
RNAcentral	URS00026A1D79 — lncRNA, 1452 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000607711

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000607711 — 1 exons

Exon	Start	End
ENSE00003695652	15243923	15245000

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 79.83.

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.83	gold quality
cortical plate	UBERON:0005343	62.41	gold quality
leukocyte	CL:0000738	62.22	gold quality
monocyte	CL:0000576	62.17	gold quality
islet of Langerhans	UBERON:0000006	61.11	gold quality
ventricular zone	UBERON:0003053	60.62	gold quality
ganglionic eminence	UBERON:0004023	60.04	gold quality
stromal cell of endometrium	CL:0002255	59.13	gold quality
bone marrow	UBERON:0002371	58.81	gold quality
granulocyte	CL:0000094	58.61	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.68	gold quality
mucosa of transverse colon	UBERON:0004991	56.97	gold quality
skeletal muscle tissue	UBERON:0001134	56.41	gold quality
blood	UBERON:0000178	56.21	gold quality
adenohypophysis	UBERON:0002196	55.60	gold quality
pituitary gland	UBERON:0000007	55.39	gold quality
prefrontal cortex	UBERON:0000451	53.69	gold quality
pancreas	UBERON:0001264	53.36	gold quality
muscle of leg	UBERON:0001383	52.78	gold quality
gastrocnemius	UBERON:0001388	52.38	gold quality
adult mammalian kidney	UBERON:0000082	51.82	gold quality
duodenum	UBERON:0002114	51.82	gold quality
hypothalamus	UBERON:0001898	51.75	gold quality
placenta	UBERON:0001987	51.68	gold quality
tonsil	UBERON:0002372	51.40	gold quality
vermiform appendix	UBERON:0001154	51.31	gold quality
mucosa of stomach	UBERON:0001199	51.12	gold quality
left adrenal gland cortex	UBERON:0035825	51.11	gold quality
spleen	UBERON:0002106	51.05	gold quality
ovary	UBERON:0000992	50.96	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.