JMJD1C-AS1

Summary

JMJD1C-AS1 (JMJD1C antisense RNA 1, HGNC:28222) is a long non-coding RNA gene on chromosome 10q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:28222
Approved symbol	JMJD1C-AS1
Name	JMJD1C antisense RNA 1
Location	10q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272767
Ensembl biotype	lncRNA
Entrez	84989
RNAcentral	URS0000142677 — lncRNA, 1335 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000609436, ENST00000719935

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000609436 — 1 exons

Exon	Start	End
ENSE00003706542	63465229	63466563

Expression profiles

Bgee: expression breadth ubiquitous, 160 present calls, max score 92.11.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0791 / max 6.9805, expressed in 17 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
105171	0.0791	17

Top tissues by expression

240 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	92.11	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.30	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.08	silver quality
sural nerve	UBERON:0015488	76.30	gold quality
amniotic fluid	UBERON:0000173	75.60	gold quality
tendon of biceps brachii	UBERON:0008188	69.71	silver quality
left testis	UBERON:0004533	69.61	gold quality
tibia	UBERON:0000979	68.52	silver quality
testis	UBERON:0000473	67.87	gold quality
right testis	UBERON:0004534	67.25	gold quality
bone marrow cell	CL:0002092	63.54	silver quality
cortical plate	UBERON:0005343	61.97	gold quality
ventricular zone	UBERON:0003053	61.92	gold quality
cartilage tissue	UBERON:0002418	61.85	silver quality
tendon	UBERON:0000043	61.82	silver quality
adult organism	UBERON:0007023	61.38	gold quality
ganglionic eminence	UBERON:0004023	60.37	gold quality
endocervix	UBERON:0000458	60.25	gold quality
stromal cell of endometrium	CL:0002255	60.14	gold quality
left lobe of thyroid gland	UBERON:0001120	60.02	gold quality
islet of Langerhans	UBERON:0000006	59.27	gold quality
thyroid gland	UBERON:0002046	58.95	gold quality
palpebral conjunctiva	UBERON:0001812	58.56	silver quality
adenohypophysis	UBERON:0002196	58.19	gold quality
right lobe of thyroid gland	UBERON:0001119	57.91	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.60	gold quality
lower esophagus mucosa	UBERON:0035834	57.51	gold quality
calcaneal tendon	UBERON:0003701	57.11	gold quality
right lung	UBERON:0002167	56.83	gold quality
ectocervix	UBERON:0012249	56.74	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-MTAB-9543	yes	6.92
E-ANND-3	yes	3.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.