JMJD1C-AS2

Summary

JMJD1C-AS2 (JMJD1C antisense RNA 2, HGNC:56170) is a long non-coding RNA gene on chromosome 10q21.3.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56170
Approved symbol	JMJD1C-AS2
Name	JMJD1C antisense RNA 2
Location	10q21.3
Locus type	RNA, long non-coding
Status	Approved
Entrez	105378330
RNAcentral	URS0000A76CDA — lncRNA, 479 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 1 (showing top): chr10q21

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

11 predictions. Top by Δscore:

Variant	Effect	Δscore
10:63430789:A:AC	donor_gain	0.5100
10:63430790:C:CC	donor_gain	0.5100
10:63430785:A:AC	donor_gain	0.4500
10:63430786:C:CC	donor_gain	0.4500
10:63430786:CTCA:C	donor_gain	0.4400
10:63431026:C:CC	acceptor_gain	0.4000
10:63430791:T:C	donor_gain	0.2900
10:63431025:A:AC	acceptor_gain	0.2900
10:63430786:CT:C	donor_gain	0.2100
10:63430790:CT:C	donor_gain	0.2000
10:63430812:CAGG:C	donor_gain	0.2000

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1003550280 (10:63429420 T>C), RS1003560663 (10:63429274 C>G), RS1004009573 (10:63429615 G>T), RS1004550478 (10:63430904 C>A,T), RS1004962523 (10:63430719 T>C), RS1005026259 (10:63429741 A>C), RS1006124047 (10:63431361 T>C), RS1006676255 (10:63430409 T>C), RS1007695943 (10:63428989 G>C,T), RS1007787679 (10:63428754 T>C), RS1008795232 (10:63429890 T>C), RS1010742684 (10:63429404 T>C), RS1011018907 (10:63429497 A>T), RS1011933178 (10:63431190 A>G), RS1012240008 (10:63429665 G>A)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.