JMJD4
geneOn this page
Also known as FLJ12517
Summary
JMJD4 (jumonji domain containing 4, HGNC:25724) is a protein-coding gene on chromosome 1q42.13, encoding 2-oxoglutarate and iron-dependent oxygenase JMJD4 (Q9H9V9). Catalyzes the 2-oxoglutarate and iron-dependent C4-lysyl hydroxylation of ETF1 at ‘Lys-63’ thereby promoting the translational termination efficiency of ETF1.
Enables peptidyl-lysine 4-dioxygenase activity. Involved in positive regulation of translational termination and protein hydroxylation. Located in cytoplasm.
Source: NCBI Gene 65094 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 123 total
- MANE Select transcript:
NM_023007
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25724 |
| Approved symbol | JMJD4 |
| Name | jumonji domain containing 4 |
| Location | 1q42.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ12517 |
| Ensembl gene | ENSG00000081692 |
| Ensembl biotype | protein_coding |
| OMIM | 620928 |
| Entrez | 65094 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 16 protein_coding, 3 retained_intron
ENST00000438896, ENST00000465251, ENST00000480590, ENST00000485807, ENST00000620518, ENST00000857554, ENST00000857555, ENST00000857556, ENST00000857557, ENST00000857558, ENST00000857559, ENST00000857560, ENST00000857561, ENST00000857562, ENST00000857563, ENST00000972390, ENST00000972391, ENST00000972392, ENST00000972393
RefSeq mRNA: 2 — MANE Select: NM_023007
NM_001161465, NM_023007
CCDS: CCDS1561, CCDS59203
Canonical transcript exons
ENST00000620518 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000656184 | 227733414 | 227733681 |
| ENSE00000656185 | 227732881 | 227733027 |
| ENSE00003470380 | 227734651 | 227734816 |
| ENSE00003616824 | 227733907 | 227734032 |
| ENSE00003715063 | 227735012 | 227735302 |
| ENSE00003745451 | 227731191 | 227732676 |
Expression profiles
Bgee: expression breadth ubiquitous, 178 present calls, max score 87.64.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 18.8276 / max 189.4281, expressed in 1802 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 17800 | 18.8276 | 1802 |
Top tissues by expression
274 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left adrenal gland cortex | UBERON:0035825 | 87.64 | gold quality |
| left adrenal gland | UBERON:0001234 | 87.10 | gold quality |
| right adrenal gland | UBERON:0001233 | 86.46 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 86.25 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.32 | gold quality |
| adrenal cortex | UBERON:0001235 | 85.15 | gold quality |
| adrenal gland | UBERON:0002369 | 84.57 | gold quality |
| apex of heart | UBERON:0002098 | 84.34 | gold quality |
| left ovary | UBERON:0002119 | 84.34 | gold quality |
| right ovary | UBERON:0002118 | 84.08 | gold quality |
| adenohypophysis | UBERON:0002196 | 84.03 | gold quality |
| right lobe of liver | UBERON:0001114 | 83.62 | gold quality |
| left testis | UBERON:0004533 | 83.61 | gold quality |
| right testis | UBERON:0004534 | 83.15 | gold quality |
| left uterine tube | UBERON:0001303 | 82.80 | gold quality |
| gastrocnemius | UBERON:0001388 | 82.21 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 81.59 | gold quality |
| stromal cell of endometrium | CL:0002255 | 81.57 | gold quality |
| pituitary gland | UBERON:0000007 | 81.54 | gold quality |
| muscle of leg | UBERON:0001383 | 81.44 | gold quality |
| prefrontal cortex | UBERON:0000451 | 81.42 | gold quality |
| right frontal lobe | UBERON:0002810 | 81.26 | gold quality |
| body of uterus | UBERON:0009853 | 81.22 | gold quality |
| right atrium auricular region | UBERON:0006631 | 81.11 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 80.99 | gold quality |
| testis | UBERON:0000473 | 80.91 | gold quality |
| cingulate cortex | UBERON:0003027 | 80.88 | gold quality |
| body of stomach | UBERON:0001161 | 80.51 | gold quality |
| body of pancreas | UBERON:0001150 | 80.45 | gold quality |
| granulocyte | CL:0000094 | 80.44 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 3.99 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
40 targeting JMJD4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-4650-5P | 99.98 | 64.69 | 999 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-4420 | 99.82 | 70.08 | 1624 |
| HSA-MIR-181B-2-3P | 99.81 | 70.06 | 1646 |
| HSA-MIR-181B-3P | 99.81 | 70.06 | 1646 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-892A | 99.54 | 68.16 | 1141 |
| HSA-MIR-4498 | 99.47 | 67.42 | 2360 |
| HSA-MIR-4318 | 99.38 | 66.94 | 1505 |
| HSA-MIR-1912-3P | 99.32 | 67.40 | 936 |
| HSA-MIR-6808-5P | 99.31 | 66.23 | 2150 |
| HSA-MIR-6893-5P | 99.31 | 66.25 | 2119 |
| HSA-MIR-4505 | 99.27 | 67.81 | 2678 |
| HSA-MIR-3176 | 99.25 | 64.35 | 954 |
| HSA-MIR-3922-3P | 99.25 | 64.96 | 1136 |
| HSA-MIR-642A-3P | 99.23 | 67.67 | 1258 |
| HSA-MIR-642B-3P | 99.23 | 67.67 | 1258 |
| HSA-MIR-4291 | 99.20 | 68.88 | 2969 |
| HSA-MIR-4651 | 99.06 | 67.57 | 2002 |
| HSA-MIR-5001-5P | 99.05 | 66.76 | 1972 |
| HSA-MIR-922 | 99.02 | 67.23 | 1838 |
| HSA-MIR-3619-5P | 99.00 | 68.87 | 2308 |
| HSA-MIR-214-3P | 98.71 | 68.12 | 2128 |
| HSA-MIR-761 | 98.71 | 68.07 | 2051 |
| HSA-MIR-4710 | 98.61 | 65.96 | 1048 |
| HSA-MIR-7114-5P | 98.51 | 67.87 | 1349 |
| HSA-MIR-3130-5P | 98.14 | 66.00 | 711 |
Literature-anchored findings (GeneRIF, showing 2)
- It observed significant positivity of JMJD4 between 59 paired samples from colon adenocarcinoma (CA) tissue and adjacent normal tissue. JMJD4 protein expression in CA differed significantly according to the histological grade and M-class (distant metastasis). (PMID:30029884)
- Jmjd4 Facilitates Pkm2 Degradation in Cardiomyocytes and Is Protective Against Dilated Cardiomyopathy. (PMID:37066795)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | jmjd4 | ENSDARG00000058995 |
| mus_musculus | Jmjd4 | ENSMUSG00000036819 |
| rattus_norvegicus | Jmjd4 | ENSRNOG00000022438 |
| drosophila_melanogaster | JMJD4 | FBGN0032671 |
| caenorhabditis_elegans | WBGENE00011563 |
Paralogs (2): JMJD6 (ENSG00000070495), JMJD8 (ENSG00000161999)
Protein
Protein identifiers
2-oxoglutarate and iron-dependent oxygenase JMJD4 — Q9H9V9 (reviewed: Q9H9V9)
Alternative names: JmjC domain-containing protein 4, Jumonji domain-containing protein 4, Lysyl-hydroxylase JMJD4
All UniProt accessions (1): Q9H9V9
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the 2-oxoglutarate and iron-dependent C4-lysyl hydroxylation of ETF1 at ‘Lys-63’ thereby promoting the translational termination efficiency of ETF1.
Subunit / interactions. Interacts with ETF1. Interacts with the ETF1-GSPT1 complex.
Subcellular location. Cytoplasm.
Similarity. Belongs to the JMJD6 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9H9V9-3 | 3 | yes |
| Q9H9V9-1 | 1 | |
| Q9H9V9-2 | 2 |
RefSeq proteins (2): NP_001154937, NP_075383* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003347 | JmjC_dom | Domain |
| IPR050910 | JMJD6_ArgDemeth/LysHydrox | Family |
Pfam: PF02373
Catalyzed reactions (Rhea), 1 shown:
- L-lysyl-[protein] + 2-oxoglutarate + O2 = 4-hydroxy-L-lysyl-[protein] + succinate + CO2 (RHEA:57156)
UniProt features (13 total): sequence variant 3, binding site 3, sequence conflict 2, splice variant 2, chain 1, domain 1, mutagenesis site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H9V9-F1 | 94.04 | 0.89 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (3): 189; 191; 269
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 189 | loss of interaction with etf1 and its ability to hydroxylate etf1. |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-9629569 | Protein hydroxylation |
| R-HSA-163841 | Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-597592 | Post-translational protein modification |
MSigDB gene sets: 123 (showing top):
GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_PAIRED_DONORS_WITH_INCORPORATION_OR_REDUCTION_OF_MOLECULAR_OXYGEN, GOBP_POSITIVE_REGULATION_OF_PROTEIN_CONTAINING_COMPLEX_DISASSEMBLY, GOBP_TRANSLATIONAL_TERMINATION, PATIL_LIVER_CANCER, GOBP_TRANSLATION, GOBP_POST_TRANSCRIPTIONAL_REGULATION_OF_GENE_EXPRESSION, GOBP_PEPTIDYL_LYSINE_MODIFICATION, DODD_NASOPHARYNGEAL_CARCINOMA_UP, MODULE_397, GOBP_REGULATION_OF_PROTEIN_CONTAINING_COMPLEX_DISASSEMBLY, GOBP_PROTEIN_HYDROXYLATION, GOBP_POSITIVE_REGULATION_OF_TRANSLATION, NUYTTEN_EZH2_TARGETS_DN, GOBP_REGULATION_OF_TRANSLATION, GOBP_POSITIVE_REGULATION_OF_PROTEIN_METABOLIC_PROCESS
GO Biological Process (3): protein hydroxylation (GO:0018126), positive regulation of translational termination (GO:0045905), regulation of gene expression (GO:0010468)
GO Molecular Function (8): 2-oxoglutarate-dependent dioxygenase activity (GO:0016706), sequence-specific DNA binding (GO:0043565), metal ion binding (GO:0046872), peptidyl-lysine 4-dioxygenase activity (GO:0106156), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), dioxygenase activity (GO:0051213), catalytic activity, acting on a protein (GO:0140096)
GO Cellular Component (3): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation | 1 |
| Post-translational protein modification | 1 |
| Metabolism of proteins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| catalytic activity | 2 |
| cellular anatomical structure | 2 |
| protein modification process | 1 |
| translational termination | 1 |
| regulation of translational termination | 1 |
| positive regulation of protein-containing complex disassembly | 1 |
| positive regulation of translation | 1 |
| gene expression | 1 |
| regulation of macromolecule biosynthetic process | 1 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1 |
| dioxygenase activity | 1 |
| DNA binding | 1 |
| cation binding | 1 |
| 2-oxoglutarate-dependent dioxygenase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| binding | 1 |
| oxidoreductase activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
736 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| JMJD4 | ALKBH1 | Q13686 | 965 |
| JMJD4 | ALKBH5 | Q6P6C2 | 883 |
| JMJD4 | ALKBH6 | Q3KRA9 | 872 |
| JMJD4 | ALKBH4 | Q9NXW9 | 870 |
| JMJD4 | ALKBH7 | Q9BT30 | 864 |
| JMJD4 | ALKBH2 | Q6NS38 | 852 |
| JMJD4 | RIOX1 | Q9H6W3 | 737 |
| JMJD4 | HSPBAP1 | Q96EW2 | 707 |
| JMJD4 | RIOX2 | Q8IUF8 | 703 |
| JMJD4 | TYW5 | A2RUC4 | 697 |
| JMJD4 | OGFOD1 | Q8N543 | 679 |
| JMJD4 | ALKBH3 | Q96Q83 | 625 |
| JMJD4 | C9K0I3 | C9K0I3 | 558 |
| JMJD4 | ALKBH8 | Q96BT7 | 557 |
| JMJD4 | ETF1 | P46055 | 541 |
IntAct
44 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| FAM9C | NDC80 | psi-mi:“MI:0914”(association) | 0.670 |
| SOCS7 | NCK2 | psi-mi:“MI:0914”(association) | 0.670 |
| PDCL3 | PEX7 | psi-mi:“MI:0914”(association) | 0.640 |
| CCT3 | TXNDC9 | psi-mi:“MI:0914”(association) | 0.640 |
| ODAPH | TCAF2 | psi-mi:“MI:0914”(association) | 0.530 |
| CCNJL | PIK3C2A | psi-mi:“MI:0914”(association) | 0.530 |
| JMJD4 | H4C16 | psi-mi:“MI:0871”(demethylation reaction) | 0.440 |
| ERBB2 | JMJD4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| JMJD4 | SPAG8 | psi-mi:“MI:0915”(physical association) | 0.370 |
| JMJD4 | SPTLC1 | psi-mi:“MI:0914”(association) | 0.350 |
| CDC16 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| SPANXN4 | UBA6 | psi-mi:“MI:0914”(association) | 0.350 |
| IQCN | TARS3 | psi-mi:“MI:0914”(association) | 0.350 |
| DUSP16 | MEIOC | psi-mi:“MI:0914”(association) | 0.350 |
| TAFA3 | FUOM | psi-mi:“MI:0914”(association) | 0.350 |
| CCT2 | WDR91 | psi-mi:“MI:0914”(association) | 0.350 |
| KANSL3 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| RFPL4B | KRBA1 | psi-mi:“MI:0914”(association) | 0.350 |
| PRG2 | ZSWIM8 | psi-mi:“MI:0914”(association) | 0.350 |
| NCAPH2 | MYO9A | psi-mi:“MI:0914”(association) | 0.350 |
| LYPD4 | PIK3C2A | psi-mi:“MI:0914”(association) | 0.350 |
| SNAPC4 | PIK3C2A | psi-mi:“MI:0914”(association) | 0.350 |
| CCT3 | TUBAL3 | psi-mi:“MI:0914”(association) | 0.350 |
| VCPIP1 | USP9Y | psi-mi:“MI:0914”(association) | 0.350 |
| RBFOX2 | PRMT5 | psi-mi:“MI:0914”(association) | 0.350 |
| APOBEC3DE | CASC3 | psi-mi:“MI:0914”(association) | 0.350 |
| ELOA2 | XRCC2 | psi-mi:“MI:0914”(association) | 0.350 |
| CHST8 | CALU | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (87): JMJD4 (Affinity Capture-RNA), JMJD4 (Affinity Capture-RNA), JMJD4 (Affinity Capture-MS), JMJD4 (Affinity Capture-MS), JMJD4 (Affinity Capture-MS), JMJD4 (Affinity Capture-MS), JMJD4 (Affinity Capture-MS), JMJD4 (Affinity Capture-MS), JMJD4 (Synthetic Growth Defect), JMJD4 (Affinity Capture-MS), JMJD4 (Affinity Capture-MS), JMJD4 (Affinity Capture-MS), JMJD4 (Affinity Capture-MS), JMJD4 (Affinity Capture-MS), JMJD4 (Affinity Capture-MS)
ESM2 similar proteins: A1A4L8, A2BDX3, A4RPM5, A5GFZ6, A6NK58, B4FAT0, B4NXF7, B6TNK6, O19179, O43323, O95396, O95571, P19971, P55203, P85971, Q02846, Q05922, Q08DH8, Q0VFH3, Q14BV6, Q17CA7, Q1WNP0, Q3KQV9, Q3TW96, Q3UQ84, Q561R2, Q58E95, Q5PQQ1, Q5ZKI2, Q61488, Q66JK4, Q6PAT0, Q7PY41, Q86U10, Q8AWD2, Q8NFV4, Q8VBZ0, Q8VDG5, Q923K4, Q96EY9
Diamond homologs: O13977, Q08BY5, Q5ZMK5, Q8BFT6, Q9H9V9, F4K2M8, Q5ZHV5, Q67ZB6, Q9VJ97, E1C7T6, Q3TA59, Q58CU3, Q5BKC6, Q6AXL5, Q6AY40, Q8BK58, Q96S16, Q9M9E8, Q58DS6, Q5R6G2, Q623U2, Q67XX3, Q6AYK2, Q6GND3, Q6NYC1, Q6PFM0, Q6Q4H1, Q7ZX37, Q9ERI5, Q9GYI4, Q9VD28, A8E534, P59723, Q08BV2, Q4IER0, Q54LV7, Q55DF5, Q5BH52, Q8BLR9, Q8RWR1
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 67 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mitotic cell cycle | 5 | 11.0× | 6e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
123 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 90 |
| Likely benign | 6 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1055 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:227732675:ACC:A | acceptor_loss | 1.0000 |
| 1:227732677:C:CC | acceptor_gain | 1.0000 |
| 1:227733023:TCATC:T | acceptor_gain | 1.0000 |
| 1:227733024:CATC:C | acceptor_gain | 1.0000 |
| 1:227733024:CATCC:C | acceptor_gain | 1.0000 |
| 1:227733025:ATCCT:A | acceptor_loss | 1.0000 |
| 1:227733026:TC:T | acceptor_gain | 1.0000 |
| 1:227733026:TCCTG:T | acceptor_loss | 1.0000 |
| 1:227733027:CC:C | acceptor_gain | 1.0000 |
| 1:227733028:C:A | acceptor_loss | 1.0000 |
| 1:227733028:C:CC | acceptor_gain | 1.0000 |
| 1:227733029:T:A | acceptor_loss | 1.0000 |
| 1:227733408:CATTA:C | donor_loss | 1.0000 |
| 1:227733409:ATTAC:A | donor_loss | 1.0000 |
| 1:227733410:TTAC:T | donor_loss | 1.0000 |
| 1:227733411:TACCA:T | donor_loss | 1.0000 |
| 1:227733412:A:C | donor_loss | 1.0000 |
| 1:227733469:T:TA | donor_gain | 1.0000 |
| 1:227733642:CCAG:C | acceptor_gain | 1.0000 |
| 1:227733643:CAGC:C | acceptor_gain | 1.0000 |
| 1:227733901:CCTCA:C | donor_loss | 1.0000 |
| 1:227733902:CTCA:C | donor_loss | 1.0000 |
| 1:227733905:A:AC | donor_gain | 1.0000 |
| 1:227733905:ACCAG:A | donor_loss | 1.0000 |
| 1:227733906:C:CC | donor_gain | 1.0000 |
| 1:227733906:CCAG:C | donor_gain | 1.0000 |
| 1:227734721:T:A | donor_gain | 1.0000 |
| 1:227734977:T:A | donor_gain | 1.0000 |
| 1:227735015:AGGT:A | donor_gain | 1.0000 |
| 1:227735024:G:C | donor_gain | 1.0000 |
AlphaMissense
2758 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:227733001:G:C | N329K | 0.999 |
| 1:227733001:G:T | N329K | 0.999 |
| 1:227733431:G:C | H315D | 0.999 |
| 1:227733614:A:G | W254R | 0.999 |
| 1:227733614:A:T | W254R | 0.999 |
| 1:227733618:C:A | K252N | 0.999 |
| 1:227733618:C:G | K252N | 0.999 |
| 1:227733664:T:A | D237V | 0.999 |
| 1:227733933:A:C | F222L | 0.999 |
| 1:227733933:A:T | F222L | 0.999 |
| 1:227733935:A:G | F222L | 0.999 |
| 1:227734669:T:A | K183I | 0.999 |
| 1:227733007:G:C | N327K | 0.998 |
| 1:227733007:G:T | N327K | 0.998 |
| 1:227733417:G:C | N319K | 0.998 |
| 1:227733417:G:T | N319K | 0.998 |
| 1:227733437:A:G | W313R | 0.998 |
| 1:227733437:A:T | W313R | 0.998 |
| 1:227733625:C:T | G250E | 0.998 |
| 1:227733633:A:C | N247K | 0.998 |
| 1:227733633:A:T | N247K | 0.998 |
| 1:227733644:A:G | W244R | 0.998 |
| 1:227733644:A:T | W244R | 0.998 |
| 1:227733645:G:C | S243R | 0.998 |
| 1:227733645:G:T | S243R | 0.998 |
| 1:227733647:T:G | S243R | 0.998 |
| 1:227733663:G:C | D237E | 0.998 |
| 1:227733663:G:T | D237E | 0.998 |
| 1:227733671:G:C | H235D | 0.998 |
| 1:227733937:C:G | R221P | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000272274 (1:227736405 C>A), RS1001333782 (1:227734184 C>A,T), RS1001557592 (1:227733697 C>G,T), RS1001585426 (1:227733461 C>T), RS1001922513 (1:227732308 G>A), RS1002493790 (1:227730877 G>A,C), RS1002751462 (1:227736555 C>T), RS1003190628 (1:227736402 C>A), RS1005104494 (1:227734516 T>C), RS1005240755 (1:227734901 C>G,T), RS1005780158 (1:227732226 G>A,C), RS1006869408 (1:227735521 T>C), RS1007045285 (1:227731151 G>A,T), RS1007309072 (1:227735820 G>C), RS1008268246 (1:227732848 C>A,G,T)
Disease associations
OMIM: gene MIM:620928 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): congenital portosystemic shunt (MONDO:0018811)
Orphanet (1): Congenital portosystemic shunt (Orphanet:480531)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000817_175 | Height | 2.000000e-13 |
| GCST90020029_636 | Waist circumference adjusted for body mass index | 8.000000e-13 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007789 | BMI-adjusted waist circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
31 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| zinc chromate | increases abundance, decreases expression | 1 |
| ferrous chloride | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| pentabromodiphenyl ether | decreases expression | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Estradiol | increases expression | 1 |
| Fluorouracil | decreases expression | 1 |
| Gallic Acid | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Dronabinol | decreases expression | 1 |
| Thiram | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Cyclosporine | decreases expression | 1 |
| Okadaic Acid | increases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
Clinical trials (associated diseases)
2 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT06041906 | Not specified | ENROLLING_BY_INVITATION | International Registry of Congenital Portosystemic Shunt (IRCPSS) |
| NCT07314814 | Not specified | NOT_YET_RECRUITING | Genetic Hallmarks of Patients With Congenital Portosystemic Shunts and Portopulmonary Hypertension |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital portosystemic shunt