JMJD7
gene geneOn this page
Summary
JMJD7 (jumonji domain containing 7, HGNC:34397) is a protein-coding gene on chromosome 15q15.1, encoding Bifunctional peptidase and (3S)-lysyl hydroxylase JMJD7 (P0C870). Bifunctional enzyme that acts both as an endopeptidase and 2-oxoglutarate-dependent monooxygenase.
This gene encodes a highly conserved protein with a JmjC domain, which are part of the cupin metalloenzyme superfamily. JmjC proteins may function as 2-oxoglutarate-Fe(II)-dependent dioxygenases. Most tissues also express read-through transcripts from this gene into the downstream phospholipase A2, group IVB (cytosolic) gene, some of which may encode fusion proteins combining the N-terminus of this protein with the phospholipase A2, group IVB protein.
Source: NCBI Gene 100137047 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 31 total
- Druggable target: yes — 2 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001114632
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:34397 |
| Approved symbol | JMJD7 |
| Name | jumonji domain containing 7 |
| Location | 15q15.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000243789 |
| Ensembl biotype | protein_coding |
| OMIM | 621306 |
| Entrez | 100137047 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 5 protein_coding, 2 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000397299, ENST00000405106, ENST00000408047, ENST00000431823, ENST00000478178, ENST00000562035, ENST00000864345, ENST00000922178
RefSeq mRNA: 1 — MANE Select: NM_001114632
NM_001114632
CCDS: CCDS45240
Canonical transcript exons
ENST00000397299 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001550778 | 41837068 | 41837581 |
| ENSE00003481982 | 41836148 | 41836243 |
| ENSE00003584292 | 41828092 | 41828188 |
| ENSE00003596324 | 41834970 | 41835223 |
| ENSE00003617077 | 41834740 | 41834893 |
| ENSE00003642219 | 41835588 | 41835644 |
| ENSE00003664778 | 41836781 | 41836940 |
| ENSE00003784809 | 41836475 | 41836551 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 93.82.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 10.0823 / max 136.2197, expressed in 1763 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 146214 | 10.0823 | 1763 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 93.82 | gold quality |
| esophagus mucosa | UBERON:0002469 | 91.13 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 90.53 | gold quality |
| skin of abdomen | UBERON:0001416 | 90.45 | gold quality |
| zone of skin | UBERON:0000014 | 89.98 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 89.97 | gold quality |
| cerebellum | UBERON:0002037 | 89.77 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 89.75 | gold quality |
| cerebellar cortex | UBERON:0002129 | 89.72 | gold quality |
| skin of leg | UBERON:0001511 | 89.67 | gold quality |
| granulocyte | CL:0000094 | 88.73 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 87.49 | gold quality |
| apex of heart | UBERON:0002098 | 87.49 | gold quality |
| minor salivary gland | UBERON:0001830 | 87.21 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 86.71 | gold quality |
| vagina | UBERON:0000996 | 86.12 | gold quality |
| tonsil | UBERON:0002372 | 85.64 | gold quality |
| esophagus | UBERON:0001043 | 85.40 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 85.31 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 84.70 | gold quality |
| body of pancreas | UBERON:0001150 | 84.68 | gold quality |
| thyroid gland | UBERON:0002046 | 84.01 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 84.00 | gold quality |
| heart left ventricle | UBERON:0002084 | 83.55 | gold quality |
| body of stomach | UBERON:0001161 | 83.45 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.16 | gold quality |
| substantia nigra | UBERON:0002038 | 82.99 | gold quality |
| prostate gland | UBERON:0002367 | 82.83 | gold quality |
| blood | UBERON:0000178 | 82.57 | gold quality |
| prefrontal cortex | UBERON:0000451 | 82.56 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-100618 | yes | 719.45 |
| E-ANND-3 | no | 1.01 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
9 targeting JMJD7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-3688-5P | 99.12 | 69.67 | 1091 |
| HSA-MIR-4272 | 98.76 | 68.74 | 1810 |
| HSA-MIR-767-3P | 98.61 | 67.69 | 1192 |
| HSA-MIR-3661 | 97.83 | 67.30 | 705 |
| HSA-MIR-6782-3P | 97.60 | 67.75 | 931 |
| HSA-MIR-4695-3P | 96.71 | 67.21 | 836 |
| HSA-MIR-500B-3P | 96.49 | 65.40 | 1087 |
| HSA-MIR-644A | 96.02 | 66.52 | 786 |
Literature-anchored findings (GeneRIF, showing 3)
- JMJD7-PLA2G4B may serve as an important therapeutic target and prognostic marker for head and neck squamous cell carcinoma development and progression. (PMID:28030848)
- The protease activities of JMJD5 and JMJD7 represent a mechanism for removal of histone tails bearing methylated arginine residues and define a potential mechanism of transcription regulation. (PMID:28847961)
- Substrate selectivity and inhibition of the human lysyl hydroxylase JMJD7. (PMID:39276004)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | jmjd7 | ENSDARG00000035546 |
| mus_musculus | Jmjd7 | ENSMUSG00000098789 |
| rattus_norvegicus | Jmjd7 | ENSRNOG00000050072 |
| drosophila_melanogaster | JMJD7 | FBGN0036366 |
Paralogs (4): KDM8 (ENSG00000155666), TYW5 (ENSG00000162971), HIF1AN (ENSG00000166135), HSPBAP1 (ENSG00000169087)
Protein
Protein identifiers
Bifunctional peptidase and (3S)-lysyl hydroxylase JMJD7 — P0C870 (reviewed: P0C870)
Alternative names: JmjC domain-containing protein 7, Jumonji domain-containing protein 7, L-lysine (3S)-hydroxylase JMJD7
All UniProt accessions (3): P0C870, B5MC20, C9K0I3
UniProt curated annotations — full annotation on UniProt →
Function. Bifunctional enzyme that acts both as an endopeptidase and 2-oxoglutarate-dependent monooxygenase. Endopeptidase that cleaves histones N-terminal tails at the carboxyl side of methylated arginine or lysine residues, to generate ’tailless nucleosomes’, which may trigger transcription elongation. Preferentially recognizes and cleaves monomethylated and dimethylated arginine residues of histones H2, H3 and H4. After initial cleavage, continues to digest histones tails via its aminopeptidase activity. Additionally, may play a role in protein biosynthesis by modifying the translation machinery. Acts as a Fe(2+) and 2-oxoglutarate-dependent monooxygenase, catalyzing (S)-stereospecific hydroxylation at C-3 of ‘Lys-22’ of DRG1 and ‘Lys-21’ of DRG2 translation factors (TRAFAC), promoting their interaction with ribonucleic acids (RNA).
Subunit / interactions. Homodimer; disulfide-linked. Interacts with DRG1 and DRG2.
Subcellular location. Nucleus. Cytoplasm.
RefSeq proteins (1): NP_001108104* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003347 | JmjC_dom | Domain |
| IPR014710 | RmlC-like_jellyroll | Homologous_superfamily |
| IPR041667 | Cupin_8 | Domain |
Pfam: PF13621
Enzyme classification (BRENDA):
- EC 1.14.11.27 — [histone H3]-dimethyl-L-lysine36 demethylase (BRENDA: 7 organisms, 38 substrates, 0 inhibitors, 0 Km, 0 kcat entries)
- EC 1.14.11.63 — peptidyl-lysine (3S)-dioxygenase (BRENDA: 3 organisms, 5 substrates, 7 inhibitors, 0 Km, 0 kcat entries)
Catalyzed reactions (Rhea), 1 shown:
- L-lysyl-[protein] + 2-oxoglutarate + O2 = (3S)-3-hydroxy-L-lysyl-[protein] + succinate + CO2 (RHEA:57152)
UniProt features (41 total): strand 16, helix 11, mutagenesis site 4, binding site 3, turn 2, sequence variant 2, chain 1, domain 1, disulfide bond 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5NFO | X-RAY DIFFRACTION | 2.17 |
| 5NFN | X-RAY DIFFRACTION | 2.98 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P0C870-F1 | 97.89 | 0.98 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (3): 178; 180; 277
Disulfide bonds (1): 47
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 180 | loss of peptidase activity toward methylated histones and reduced anchorage-independent growth of transformed cells; whe |
| 277 | loss of peptidase activity toward methylated histones and reduced anchorage-independent growth of transformed cells; whe |
| 47 | impairs homodimer formation. |
| 178 | loss of peptidase activity toward methylated histones and reduced anchorage-independent growth of transformed cells; whe |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-9629569 | Protein hydroxylation |
| R-HSA-163841 | Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-597592 | Post-translational protein modification |
MSigDB gene sets: 30 (showing top):
GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_PAIRED_DONORS_WITH_INCORPORATION_OR_REDUCTION_OF_MOLECULAR_OXYGEN, GOBP_PEPTIDYL_LYSINE_MODIFICATION, CADWELL_ATG16L1_TARGETS_DN, GOBP_PROTEIN_HYDROXYLATION, GOBP_PROTEOLYSIS, GOMF_PEPTIDASE_ACTIVITY, GOMF_AMINOPEPTIDASE_ACTIVITY, GOMF_DIOXYGENASE_ACTIVITY, GOMF_EXOPEPTIDASE_ACTIVITY, REACTOME_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, GOMF_MONOOXYGENASE_ACTIVITY, GOBP_PEPTIDYL_LYSINE_HYDROXYLATION, REACTOME_GAMMA_CARBOXYLATION_HYPUSINYLATION_HYDROXYLATION_AND_ARYLSULFATASE_ACTIVATION, FEV_TARGET_GENES, FOXD2_TARGET_GENES
GO Biological Process (2): proteolysis (GO:0006508), protein hydroxylation (GO:0018126)
GO Molecular Function (10): endopeptidase activity (GO:0004175), aminopeptidase activity (GO:0004177), monooxygenase activity (GO:0004497), 2-oxoglutarate-dependent dioxygenase activity (GO:0016706), metal ion binding (GO:0046872), peptidyl-lysine 3-dioxygenase activity (GO:0106155), protein binding (GO:0005515), peptidase activity (GO:0008233), oxidoreductase activity (GO:0016491), hydrolase activity (GO:0016787)
GO Cellular Component (3): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation | 1 |
| Post-translational protein modification | 1 |
| Metabolism of proteins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| catalytic activity, acting on a protein | 2 |
| catalytic activity | 2 |
| cellular anatomical structure | 2 |
| protein metabolic process | 1 |
| protein modification process | 1 |
| peptidase activity | 1 |
| exopeptidase activity | 1 |
| oxidoreductase activity | 1 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1 |
| dioxygenase activity | 1 |
| cation binding | 1 |
| 2-oxoglutarate-dependent dioxygenase activity | 1 |
| binding | 1 |
| hydrolase activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
236 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| JMJD7 | RIOX2 | Q8IUF8 | 513 |
| JMJD7 | DRG2 | P55039 | 507 |
| JMJD7 | JMJD4 | Q9H9V9 | 506 |
| JMJD7 | U3KPZ7 | U3KPZ7 | 445 |
| JMJD7 | HR | O43593 | 444 |
| JMJD7 | RIOX1 | Q9H6W3 | 420 |
| JMJD7 | ZC3H15 | Q8WU90 | 419 |
| JMJD7 | RWDD1 | Q9H446 | 412 |
| JMJD7 | PLA2G4B | P0C869 | 411 |
| JMJD7 | PRMT9 | Q6P2P2 | 352 |
| JMJD7 | JMJD8 | Q96S16 | 348 |
| JMJD7 | PLA2G3 | Q9NZ20 | 326 |
| JMJD7 | PHF2 | O75151 | 299 |
| JMJD7 | KDM4E | B2RXH2 | 275 |
| JMJD7 | JMJD6 | Q6NYC1 | 273 |
IntAct
64 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| JMJD7 | VAC14 | psi-mi:“MI:0915”(physical association) | 0.560 |
| VAC14 | JMJD7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | OXER1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SNRPC | JMJD7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | SAMD11 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | POM121 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | FOXI1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GCM2 | JMJD7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | UBAP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | DRG2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HGS | JMJD7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| POGZ | JMJD7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | CASP6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | LAMP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | RAN | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | WFS1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | KIF1B | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | SH3GLB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| JMJD7 | PRPF40A | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (21): JMJD7 (Two-hybrid), JMJD7 (Two-hybrid), JMJD7 (Two-hybrid), JMJD7 (Two-hybrid), JMJD7 (Two-hybrid), JMJD7 (Two-hybrid), JMJD7 (Two-hybrid), JMJD7 (Two-hybrid), JMJD7 (Two-hybrid), JMJD7 (Two-hybrid), JMJD7 (Two-hybrid), JMJD7 (Affinity Capture-MS), CCT2 (Affinity Capture-MS), CCT7 (Affinity Capture-MS), CCT8 (Affinity Capture-MS)
ESM2 similar proteins: A2AV36, A2RSX7, A2RUC4, A4IHY0, A6QQV6, A8E534, B2GUS6, B5XF11, E1C7T6, E9PYK3, F1RET2, P0C870, P0C872, P47823, P59723, P83006, Q08BV2, Q08BY5, Q0VCA8, Q0WVR4, Q3UDE2, Q3V3E1, Q58CU3, Q5BKC6, Q5EA24, Q5R673, Q5U4E8, Q5ZHV5, Q5ZIB9, Q66KI9, Q67XX3, Q67ZB6, Q6AXL5, Q6PCI6, Q7T0X7, Q7TMC8, Q8BFT6, Q8BGG7, Q8BK58, Q8BLR9
Diamond homologs: A2RSX7, P0C870, P0C872, Q0WVR4, Q54CS7, Q9VU77, O94606, Q8BLR9, Q9NWT6, Q67XX3, F4K2M8
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
31 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 21 |
| Likely benign | 5 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1973 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:41828186:GGG:G | donor_gain | 1.0000 |
| 15:41828186:GGGGT:G | donor_loss | 1.0000 |
| 15:41828187:GG:G | donor_gain | 1.0000 |
| 15:41828187:GGG:G | donor_gain | 1.0000 |
| 15:41828188:GG:G | donor_gain | 1.0000 |
| 15:41828188:GGTG:G | donor_loss | 1.0000 |
| 15:41828189:G:GG | donor_gain | 1.0000 |
| 15:41828189:GT:G | donor_loss | 1.0000 |
| 15:41828189:GTGA:G | donor_loss | 1.0000 |
| 15:41828190:T:A | donor_loss | 1.0000 |
| 15:41834870:G:GT | donor_gain | 1.0000 |
| 15:41835222:GG:G | donor_gain | 1.0000 |
| 15:41835223:GG:G | donor_gain | 1.0000 |
| 15:41835224:G:GG | donor_gain | 1.0000 |
| 15:41835224:GTGA:G | donor_loss | 1.0000 |
| 15:41835645:G:GG | donor_gain | 1.0000 |
| 15:41836142:T:A | acceptor_gain | 1.0000 |
| 15:41836241:ATGGT:A | donor_loss | 1.0000 |
| 15:41836242:TGG:T | donor_loss | 1.0000 |
| 15:41836244:GTAG:G | donor_loss | 1.0000 |
| 15:41836245:T:A | donor_loss | 1.0000 |
| 15:41836465:T:A | acceptor_gain | 1.0000 |
| 15:41836466:G:A | acceptor_gain | 1.0000 |
| 15:41837066:A:AG | acceptor_gain | 1.0000 |
| 15:41837067:G:GG | acceptor_gain | 1.0000 |
| 15:41837067:GTGA:G | acceptor_gain | 1.0000 |
| 15:41828185:AGGG:A | donor_gain | 0.9900 |
| 15:41828186:GGGG:G | donor_gain | 0.9900 |
| 15:41834736:TCAG:T | acceptor_gain | 0.9900 |
| 15:41834738:A:AG | acceptor_gain | 0.9900 |
AlphaMissense
2046 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:41836150:C:G | H178D | 0.998 |
| 15:41836157:A:C | D180A | 0.998 |
| 15:41836157:A:T | D180V | 0.998 |
| 15:41836907:C:G | H277D | 0.998 |
| 15:41835046:T:C | F99L | 0.997 |
| 15:41835048:C:A | F99L | 0.997 |
| 15:41835048:C:G | F99L | 0.997 |
| 15:41835610:C:A | N165K | 0.997 |
| 15:41835610:C:G | N165K | 0.997 |
| 15:41835614:T:A | W167R | 0.997 |
| 15:41835614:T:C | W167R | 0.997 |
| 15:41837072:T:A | N289K | 0.997 |
| 15:41837072:T:G | N289K | 0.997 |
| 15:41836156:G:C | D180H | 0.996 |
| 15:41836157:A:G | D180G | 0.996 |
| 15:41836158:C:A | D180E | 0.996 |
| 15:41836158:C:G | D180E | 0.996 |
| 15:41836170:C:A | N184K | 0.996 |
| 15:41836170:C:G | N184K | 0.996 |
| 15:41836787:T:A | W237R | 0.996 |
| 15:41836787:T:C | W237R | 0.996 |
| 15:41834874:T:A | W67R | 0.995 |
| 15:41834874:T:C | W67R | 0.995 |
| 15:41835047:T:C | F99S | 0.995 |
| 15:41835639:C:T | T175I | 0.995 |
| 15:41836904:T:C | F276L | 0.995 |
| 15:41836906:C:A | F276L | 0.995 |
| 15:41836906:C:G | F276L | 0.995 |
| 15:41836150:C:A | H178N | 0.994 |
| 15:41836166:A:T | E183V | 0.994 |
dbSNP variants (sampled 300 via entrez): RS1000072675 (15:41829698 A>G), RS1000127284 (15:41833547 C>T), RS1000783038 (15:41834250 T>G), RS1000880083 (15:41830687 C>G,T), RS1000926219 (15:41835949 C>T), RS1000956142 (15:41826619 G>A), RS1001121060 (15:41835328 C>G,T), RS1001351875 (15:41834567 G>A), RS1001561295 (15:41830926 A>G), RS1001904668 (15:41828579 A>G), RS1001973957 (15:41827451 C>T), RS1002021797 (15:41831889 A>G), RS1002156036 (15:41838073 C>T), RS1002539629 (15:41832016 C>T), RS1002774872 (15:41836035 C>T)
Disease associations
OMIM: gene MIM:621306 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST90020024_483 | A body shape index | 3.000000e-09 |
| GCST90020025_142 | Waist-to-hip ratio adjusted for BMI | 2.000000e-08 |
| GCST90020025_450 | Waist-to-hip ratio adjusted for BMI | 1.000000e-09 |
| GCST90020027_628 | Waist-hip index | 1.000000e-09 |
| GCST90020027_629 | Waist-hip index | 1.000000e-08 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4879430 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,281 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL197194 | VIDOFLUDIMUS | 3 | 808 |
| CHEMBL3982723 | DAROVASERTIB | 2 | 473 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 9 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.93 | Kd | 1180 | nM | CHEMBL4846929 |
| 5.42 | IC50 | 3800 | nM | CHEMBL4846929 |
| 5.18 | IC50 | 6620 | nM | CHEMBL4846929 |
| 5.14 | IC50 | 7160 | nM | VIDOFLUDIMUS |
PubChem BioAssay actives
4 with measured affinity, of 11 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (5-nitroquinolin-8-yl) 2,4-dichlorobenzoate | 1763997: Binding affinity to N-terminal His-tagged human JMJD7 (1 to 316 residues) expressed in Escherichia coli BL21 (DE3) measured by MST assay | kd | 1.1800 | uM |
| 2-[[2-fluoro-4-(3-methoxyphenyl)phenyl]carbamoyl]cyclopentene-1-carboxylic acid | 1763996: Inhibition of N-terminal His-tagged human JMJD7 (1 to 316 residues) expressed in Escherichia coli BL21 (DE3) luciferase based succinate-gloTM JmjC demethylase/hydroxylase assay | ic50 | 7.1600 | uM |
CTD chemical–gene interactions
12 total (human), top 12 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| gallium arsenide | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenicals | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Urethane | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
ChEMBL screening assays
5 unique, capped per target: 5 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4822994 | Binding | Inhibition of N-terminal His-tagged human JMJD7 (1 to 316 residues) expressed in Escherichia coli BL21 (DE3) luciferase based succinate-gloTM JmjC demethylase/hydroxylase assay | Discovery of JMJD7 inhibitors with the aid of virtual screening and bioactivity evaluation. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.