KCNA5

gene
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Also known as Kv1.5HK2HPCN1

Summary

KCNA5 (potassium voltage-gated channel subfamily A member 5, HGNC:6224) is a protein-coding gene on chromosome 12p13.32, encoding Potassium voltage-gated channel subfamily A member 5 (P22460). Voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes.

Potassium channels represent the most complex class of voltage-gated ino channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to have human homolog(s). This gene encodes a member of the potassium channel, voltage-gated, shaker-related subfamily. This member contains six membrane-spanning domains with a shaker-type repeat in the fourth segment. It belongs to the delayed rectifier class, the function of which could restore the resting membrane potential of beta cells after depolarization and thereby contribute to the regulation of insulin secretion. This gene is intronless, and the gene is clustered with genes KCNA1 and KCNA6 on chromosome 12. Defects in this gene are a cause of familial atrial fibrillation type 7 (ATFB7).

Source: NCBI Gene 3741 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): atrial fibrillation, familial, 7 (Moderate, GenCC) — +1 more curated relationship
  • GWAS associations: 2
  • Clinical variants (ClinVar): 597 total — 3 pathogenic
  • Phenotypes (HPO): 21
  • Druggable target: yes — 8 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_002234

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:6224
Approved symbolKCNA5
Namepotassium voltage-gated channel subfamily A member 5
Location12p13.32
Locus typegene with protein product
StatusApproved
AliasesKv1.5, HK2, HPCN1
Ensembl geneENSG00000130037
Ensembl biotypeprotein_coding
OMIM176267
Entrez3741

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 protein_coding

ENST00000252321

RefSeq mRNA: 1 — MANE Select: NM_002234 NM_002234

CCDS: CCDS8536

Canonical transcript exons

ENST00000252321 — 1 exons

ExonStartEnd
ENSE0000089311850438795046788

Expression profiles

Bgee: expression breadth ubiquitous, 179 present calls, max score 96.56.

FANTOM5 (CAGE): breadth broad, TPM avg 0.5134 / max 120.3897, expressed in 213 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter IDTPM avgSamples expressed
1236020.2006110
1236050.135780
1236030.072530
1236040.070239
1236010.034514

Top tissues by expression

277 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
cardiac muscle of right atriumUBERON:000337996.56gold quality
blood vessel layerUBERON:000479793.28gold quality
cardiac atriumUBERON:000208192.19gold quality
right atrium auricular regionUBERON:000663191.89gold quality
right coronary arteryUBERON:000162591.79gold quality
popliteal arteryUBERON:000225091.76gold quality
tibial arteryUBERON:000761091.74gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047391.35gold quality
aortaUBERON:000094790.97gold quality
choroid plexus epitheliumUBERON:000391190.62gold quality
ascending aortaUBERON:000149690.11gold quality
thoracic aortaUBERON:000151590.01gold quality
left coronary arteryUBERON:000162689.93gold quality
coronary arteryUBERON:000162189.91gold quality
descending thoracic aortaUBERON:000234589.04gold quality
mucosa of stomachUBERON:000119988.41gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099185.35gold quality
saphenous veinUBERON:000731880.72gold quality
myocardiumUBERON:000234979.75gold quality
endothelial cellCL:000011579.26silver quality
heartUBERON:000094878.38gold quality
vena cavaUBERON:000408777.60silver quality
islet of LangerhansUBERON:000000676.17gold quality
mucosa of urinary bladderUBERON:000125976.12gold quality
diaphragmUBERON:000110375.84gold quality
apex of heartUBERON:000209875.04gold quality
nucleus accumbensUBERON:000188273.78gold quality
pituitary glandUBERON:000000773.13gold quality
pigmented layer of retinaUBERON:000178272.06gold quality
hypothalamusUBERON:000189872.06gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-GEOD-137537yes14.11
E-ENAD-27no7.62
E-ANND-3no1.83

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): CREB1, HIF1A, HSF1, SP1

miRNA regulators (miRDB)

65 targeting KCNA5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-29A-3P100.0073.111835
HSA-MIR-29B-3P100.0073.181833
HSA-MIR-29C-3P100.0073.151833
HSA-MIR-6740-5P100.0065.64932
HSA-MIR-4455100.0065.481587
HSA-MIR-432-3P100.0067.86705
HSA-MIR-5692B100.0071.322622
HSA-MIR-5692C100.0071.322622
HSA-MIR-5692A100.0074.406850
HSA-MIR-4673100.0066.641490
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-186-5P99.9970.833707
HSA-MIR-4645-5P99.9865.811284
HSA-MIR-4666A-3P99.9671.713434
HSA-MIR-101-3P99.9475.032230
HSA-MIR-6835-3P99.9370.492904
HSA-MIR-10527-5P99.9172.283754
HSA-MIR-498-3P99.9171.271114
HSA-MIR-367199.9073.043897
HSA-MIR-1343-3P99.8966.781815
HSA-MIR-6783-3P99.8967.922059
HSA-MIR-76599.8468.242442
HSA-MIR-132199.8465.301811
HSA-MIR-473999.8465.251832
HSA-MIR-4756-5P99.8464.981809
HSA-MIR-6875-3P99.8270.262983
HSA-MIR-139-5P99.8069.501399
HSA-MIR-11181-3P99.7566.382205
HSA-MIR-197699.7465.481127
HSA-MIR-471999.7372.103329

Literature-anchored findings (GeneRIF, showing 40)

  • characterization of a truncated form of Kv1.5 (PMID:12021261)
  • Modulation by protein kinase C activation: role of the Kvbeta1.2 subunit. (PMID:12130714)
  • co-localization of Kv1.5 with PSD95 at the cell surface is similarly independent of the canonical PDZ-binding motif (PMID:12435606)
  • Reduction in the activation energy for the inactivation transition from the open state underlies the inhibition of hKv1.5 Na(+) current at low pH. (PMID:12601085)
  • Kv1.5 potassium channel mRNA expression correlates with glioma entities and malignancy grades; expression is high in astrocytomas, moderate in oligodendrogliomas, and low in glioblastomas. (PMID:12850541)
  • multiple isoforms of SAP97 were identifed in human heart atrium specimens; isoforms were found to co-immunoprecipiate with hKv1.5; isoforms were found to have distinct effect on hKv1.5 current and spatial channel organization (PMID:12970345)
  • the destabilization or bending of the S6 alpha-helix of KV1.5 caused by the PXP motif apparently creates a flexible “hinge” that allows movement of the lower S6 segment during channel gating and opening (PMID:13679372)
  • No electrical remodeling is evident in Kv1.5DN-expressing ventricular myocytes, and the (Kv1.5DN-induced) elimination of IK,slow1 does not result in spontaneous ventricular arrhythmias. (PMID:14527939)
  • an examination of the effect of K channel blocker S0100176) on the structure of the Kv1.5 channel (PMID:14578345)
  • Overexpression of the human KCNA5 gene increases K+ currents (i.e., K+ efflux or loss), accelerates apoptotic volume decrease (AVD), increases caspase-3 activity, and induces apoptosis (PMID:15140747)
  • Heterologously expressed human pulmonary arterial smooth muscle cells (PASMC) Kv1.5 generated an O2- and correolide-sensitive I(K) like that in resistance PASMCs. (PMID:15217912)
  • There is a central role for developmentally regulated ductus arteriosus SMC O2-sensitive Kv channels in the functional closure of the DA. (PMID:15353504)
  • This suggests that for Kv channels, the coupling between voltage sensing and gating reflects primarily an intrasubunit interaction. (PMID:15623896)
  • P. 142: “An aligment of KCNA5 among human, mouse, and rat shows 86% amino acid identity, and no monogenicc human arrhythmia syndrome has been linked to KCNA5” (PMID:15735608)
  • a pathway for Kv1.5 internalization from the cell surface involving early endosomes, followed by later trafficking by the dynein motor along microtubules. (PMID:16051887)
  • KCNA5 is an important Kv channel that regulates resting membrane potential and that acute hypoxia selectively reduces KCNA5 channel activity in pulmonary smooth muscle cells relative to mesenteric smooth muscle cells and other cell types. (PMID:16236819)
  • We found three heterozygous SNPs: R87Q, A251T, and P307S. Both R87Q and P307S diminished the inactivation amplitude. (PMID:16411137)
  • specific inhibition of kinase C by Calphostin C eliminated the increase in wild-type hKv1.5 currents associated with synapse-associated protein 97 overexpression suggesting a role for this kinase in the response (PMID:16466689)
  • functional role of K(v)1.5 and K(v)1.3 on activated human dendritic cells (PMID:16729292)
  • hKv1.5 channel is expressed in human alveolar macrophages and it plays a role in phagocytosis and migration of the human alveolar macrophage. (PMID:16765315)
  • Mg2+ block causes voltage-dependent inactivation of Kv1.5 (PMID:16902793)
  • These results imply that protonation of residue 463 does not modulate inactivation solely by an electrostatic interaction with residues near the pore mouth. (PMID:16956964)
  • results suggest Kv1.5 channels are modulated by agonists; novel SNPs are present in idiopathic pulmonary arterial hypertension; SNPs may underlie altered expression and/or function of Kv1.5 channels in pulmonary artery smooth muscle cells in IPAH (PMID:17267549)
  • S-acylation can regulate steady-state expression of Kv1.5. (PMID:17344312)
  • Down-regulation of Kv1.5 enhanced the drug-resistant phenotype of gastric cancer cells. (PMID:17428690)
  • In conclusion, N-cadherin modifies Kv1.5 channel activity and is thus a novel candidate signaling molecule participating in the regulation of a variety of functions including cardiac action potential and vascular tone. (PMID:17868645)
  • mitochondrial abnormalities that disturb the reactive O(2) species HIF-1alpha-Kv1.5 O(2)-sensing pathway contribute to the pathogenesis of pulmonary arterial hypertension and cancer–REVIEW (PMID:18083891)
  • KCNA5 is involved K(+)-channel in regulatory volume decrease in human spermatozoa, and channel activity is regulated beyond the extent of protein expression. (PMID:18157847)
  • R87Q and P307S polymorphisms in hKv1.5, possibly in combination with other risk factors, may influencethe development of postoperative atrial fibrillation (PMID:18209767)
  • implicate the traffic and localization of Kv1.3/Kv1.5 heteromers in the complex regulation of immune system cells (PMID:18218624)
  • SAP97 regulates the K(+) current in cardiac myocytes by retaining and immobilizing Kv1.5 subunits in the plasma membrane. (PMID:18245566)
  • Results support a role of FHL1 as a key molecular component in the I(Kur) complex in human atrium, where it likely regulates functional expression of KCNA5. (PMID:18281375)
  • Report a Kv1.5 channel with an altered activation gate sequence that displays both “fast” and “slow” activation kinetics. (PMID:18385285)
  • Active site architecture, certain key residues and pharmacophore common-features responsible for substrate specificity are identified on Kv1.5 potassium channel that are very helpful in understanding the blockade mechanism of Kv1.5 potassium channel. (PMID:18485768)
  • The Rab GTPases thus constitute dynamic targets by which cells may modulate Kv1.5 functional expression. (PMID:18755741)
  • Double-mutant cycle analysis indicates that R5 of Kvbeta1.3 interacts with A501 and T480 of Kv1.5, residues located deep within the pore of the channel. (PMID:18987637)
  • Replacing L45 and S6(T) by corresponding hKv2.1 sequences, transfered the hKv2.1 kinetics but not the voltage dependence to hKv1.5. Point mutations in S6(T) show that it needs to be alpha-helical and forms a “crevice” for the L45 residues I422 and T426. (PMID:19029374)
  • In the absence of potassium ion, significant N-methyl-D-glucamine (NMDG)-positive currents could be recorded from human embryonic kidney cells expressing Kv3.1 or Kv3.2b channels and Kv1.5 Arg487Tyr/Val, but not wild-type channels. (PMID:19332619)
  • These findings expand the spectrum of mutations in KCNA5 linked to atrial fibrillation (AF) and provide new insight into the molecular mechanism involved in AF. (PMID:19343045)
  • Antiarrhythmic drug-induced internalization of the atrial-specific k+ channel kv1.5. (PMID:19443837)

Cross-species orthologs

2 orthologs

OrganismSymbolGene ID
mus_musculusKcna5ENSMUSG00000045534
rattus_norvegicusKcna5ENSRNOG00000072038

Paralogs (31): KCNG1 (ENSG00000026559), KCNQ1 (ENSG00000053918), KCNQ2 (ENSG00000075043), KCND1 (ENSG00000102057), KCNA7 (ENSG00000104848), KCNA1 (ENSG00000111262), KCNC4 (ENSG00000116396), KCNQ4 (ENSG00000117013), KCNS1 (ENSG00000124134), KCNC1 (ENSG00000129159), KCNC3 (ENSG00000131398), KCNA10 (ENSG00000143105), KCNA6 (ENSG00000151079), KCNS2 (ENSG00000156486), KCNB1 (ENSG00000158445), KCNF1 (ENSG00000162975), KCNV1 (ENSG00000164794), KCNC2 (ENSG00000166006), KCNV2 (ENSG00000168263), KCNG4 (ENSG00000168418), KCNS3 (ENSG00000170745), KCNG3 (ENSG00000171126), KCND3 (ENSG00000171385), KCNA3 (ENSG00000177272), KCNA2 (ENSG00000177301), KCNG2 (ENSG00000178342), KCNA4 (ENSG00000182255), KCNB2 (ENSG00000182674), KCNQ3 (ENSG00000184156), KCND2 (ENSG00000184408), KCNQ5 (ENSG00000185760)

Protein

Protein identifiers

Potassium voltage-gated channel subfamily A member 5P22460 (reviewed: P22460)

Alternative names: HPCN1, Voltage-gated potassium channel HK2, Voltage-gated potassium channel subunit Kv1.5

All UniProt accessions (1): P22460

UniProt curated annotations — full annotation on UniProt →

Function. Voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes. Forms tetrameric potassium-selective channels through which potassium ions pass in accordance with their electrochemical gradient. The channel alternates between opened and closed conformations in response to the voltage difference across the membrane. Can form functional homotetrameric channels and heterotetrameric channels that contain variable proportions of KCNA1, KCNA2, KCNA4, KCNA5, and possibly other family members as well; channel properties depend on the type of alpha subunits that are part of the channel. Channel properties are modulated by cytoplasmic beta subunits that regulate the subcellular location of the alpha subunits and promote rapid inactivation. Homotetrameric channels display rapid activation and slow inactivation. Required for normal electrical conduction including formation of the infranodal ventricular conduction system and normal action potential configuration, as a result of its interaction with XIRP2. May play a role in regulating the secretion of insulin in normal pancreatic islets. Exhibits a faster depolarization rate, reduced voltage-dependent recovery from inactivation and an excessive cumulative inactivation.

Subunit / interactions. Homotetramer and heterotetramer of potassium channel proteins. Interacts with DLG1, which enhances channel currents. Forms a ternary complex with DLG1 and CAV3. Interacts with KCNAB1. Interacts with UBE2I. Interacts with XIRP2; the interaction is required for normal action potential configuration in the heart.

Subcellular location. Cell membrane.

Tissue specificity. Pancreatic islets and insulinoma.

Post-translational modifications. Glycosylated. Sumoylated on Lys-221, and Lys-536, preferentially with SUMO3. Sumoylation regulates the voltage sensitivity of the channel.

Disease relevance. Atrial fibrillation, familial, 7 (ATFB7) [MIM:612240] A familial form of atrial fibrillation, a common sustained cardiac rhythm disturbance. Atrial fibrillation is characterized by disorganized atrial electrical activity and ineffective atrial contraction promoting blood stasis in the atria and reduces ventricular filling. It can result in palpitations, syncope, thromboembolic stroke, and congestive heart failure. The disease is caused by variants affecting the gene represented in this entry.

Activity regulation. Inhibited by 4-aminopyridine, nicotine, bepridil, correolide, and endothelin-1.

Domain organisation. The amino terminus may be important in determining the rate of inactivation of the channel while the C-terminal PDZ-binding motif may play a role in modulation of channel activity and/or targeting of the channel to specific subcellular compartments. The transmembrane segment S4 functions as a voltage-sensor and is characterized by a series of positively charged amino acids at every third position. Channel opening and closing is effected by a conformation change that affects the position and orientation of the voltage-sensor paddle formed by S3 and S4 within the membrane. A transmembrane electric field that is positive inside would push the positively charged S4 segment outwards, thereby opening the pore, while a field that is negative inside would pull the S4 segment inwards and close the pore. Changes in the position and orientation of S4 are then transmitted to the activation gate formed by the inner helix bundle via the S4-S5 linker region.

Similarity. Belongs to the potassium channel family. A (Shaker) (TC 1.A.1.2) subfamily. Kv1.5/KCNA5 sub-subfamily.

Isoforms (2)

UniProt IDNamesCanonical?
P22460-11yes
P22460-22, Short

RefSeq proteins (1): NP_002225* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000210BTB/POZ_domDomain
IPR003131T1-type_BTBDomain
IPR003968K_chnl_volt-dep_KvFamily
IPR003972K_chnl_volt-dep_Kv1Family
IPR004052K_chnl_volt-dep_Kv1.5Family
IPR005821Ion_trans_domDomain
IPR011333SKP1/BTB/POZ_sfHomologous_superfamily
IPR027359Volt_channel_dom_sfHomologous_superfamily
IPR028325VG_K_chnlFamily

Pfam: PF00520, PF02214

Catalyzed reactions (Rhea), 1 shown:

  • K(+)(in) = K(+)(out) (RHEA:29463)

UniProt features (64 total): sequence variant 15, topological domain 8, sequence conflict 8, transmembrane region 6, region of interest 6, mutagenesis site 5, compositionally biased region 4, intramembrane region 2, repeat 2, short sequence motif 2, cross-link 2, chain 1, modified residue 1, lipid moiety-binding region 1, splice variant 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P22460-F172.640.46

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (4): 557, 346, 221, 536

Mutagenesis-validated functional residues (5):

PositionPhenotype
15loss of dlg1 effect on channel current.
220reduces sumoylation; when associated with n-535.
221abolishes sumoylation; when associated with r-536.
535reduces sumoylation; when associated with n-220.
536abolishes sumoylation; when associated with r-221.

Function

Pathways and Gene Ontology

Reactome pathways

6 pathways

IDPathway
R-HSA-1296072Voltage gated Potassium channels
R-HSA-5576890Phase 3 - rapid repolarisation
R-HSA-112316Neuronal System
R-HSA-1296071Potassium Channels
R-HSA-397014Muscle contraction
R-HSA-5576891Cardiac conduction

MSigDB gene sets: 809 (showing top): AHRARNT_01, GOBP_POTASSIUM_ION_TRANSPORT, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, GOBP_CARBOHYDRATE_TRANSPORT, GOBP_REGULATION_OF_AUTOPHAGY, GOBP_BUNDLE_OF_HIS_CELL_TO_PURKINJE_MYOCYTE_COMMUNICATION, GOBP_NUCLEOSIDE_DIPHOSPHATE_METABOLIC_PROCESS, BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, BENPORATH_ES_WITH_H3K27ME3, YAGI_AML_WITH_INV_16_TRANSLOCATION, HARRIS_HYPOXIA, GOBP_CIRCULATORY_SYSTEM_PROCESS, REACTOME_VOLTAGE_GATED_POTASSIUM_CHANNELS, GOBP_RESPONSE_TO_PEPTIDE, REACTOME_POTASSIUM_CHANNELS

GO Biological Process (28): action potential (GO:0001508), response to hypoxia (GO:0001666), potassium ion transport (GO:0006813), Notch signaling pathway (GO:0007219), response to mechanical stimulus (GO:0009612), regulation of vasoconstriction (GO:0019229), regulation of membrane potential (GO:0042391), response to hydrogen peroxide (GO:0042542), regulation of insulin secretion (GO:0050796), protein homooligomerization (GO:0051260), negative regulation of cytosolic calcium ion concentration (GO:0051481), potassium ion homeostasis (GO:0055075), response to hyperoxia (GO:0055093), membrane hyperpolarization (GO:0060081), regulation of atrial cardiac muscle cell membrane repolarization (GO:0060372), potassium ion transmembrane transport (GO:0071805), atrial cardiac muscle cell action potential (GO:0086014), membrane repolarization during bundle of His cell action potential (GO:0086050), membrane repolarization during SA node cell action potential (GO:0086052), regulation of heart rate by cardiac conduction (GO:0086091), potassium ion export across plasma membrane (GO:0097623), membrane repolarization during atrial cardiac muscle cell action potential (GO:0098914), positive regulation of G1/S transition of mitotic cell cycle (GO:1900087), positive regulation of myoblast proliferation (GO:2000288), monoatomic ion transport (GO:0006811), monoatomic ion transmembrane transport (GO:0034220), protein complex oligomerization (GO:0051259), transmembrane transport (GO:0055085)

GO Molecular Function (13): signaling receptor binding (GO:0005102), voltage-gated potassium channel activity (GO:0005249), delayed rectifier potassium channel activity (GO:0005251), outward rectifier potassium channel activity (GO:0015271), protein kinase binding (GO:0019901), alpha-actinin binding (GO:0051393), voltage-gated potassium channel activity involved in bundle of His cell action potential repolarization (GO:0086087), voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization (GO:0086089), voltage-gated potassium channel activity involved in SA node cell action potential repolarization (GO:0086090), scaffold protein binding (GO:0097110), monoatomic ion channel activity (GO:0005216), potassium channel activity (GO:0005267), protein binding (GO:0005515)

GO Cellular Component (13): Golgi apparatus (GO:0005794), plasma membrane (GO:0005886), voltage-gated potassium channel complex (GO:0008076), cell surface (GO:0009986), intercalated disc (GO:0014704), membrane (GO:0016020), Z disc (GO:0030018), potassium channel complex (GO:0034705), membrane raft (GO:0045121), intracellular canaliculus (GO:0046691), perinuclear region of cytoplasm (GO:0048471), caveola (GO:0005901), monoatomic ion channel complex (GO:0034702)

Reactome top-level categories

Rollup of top-4 pathways:

CategoryPathways
Potassium Channels1
Cardiac conduction1
Neuronal System1
Muscle contraction1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure5
voltage-gated potassium channel activity involved in cardiac muscle cell action potential repolarization3
regulation of membrane potential2
response to stress2
regulation of biological quality2
membrane repolarization during cardiac muscle cell action potential2
protein binding2
voltage-gated potassium channel activity2
cytoplasm2
response to decreased oxygen levels1
metal ion transport1
cell surface receptor signaling pathway1
response to external stimulus1
response to abiotic stimulus1
vasoconstriction1
blood vessel diameter maintenance1
regulation of blood circulation1
monoatomic ion transmembrane transport1
response to reactive oxygen species1
insulin secretion1
regulation of protein secretion1
regulation of peptide hormone secretion1
protein complex oligomerization1
monoatomic cation homeostasis1
inorganic ion homeostasis1
response to increased oxygen levels1
regulation of cardiac muscle cell membrane repolarization1
atrial cardiac muscle cell membrane repolarization1
potassium ion transport1
monoatomic cation transmembrane transport1
cardiac muscle cell action potential involved in contraction1
atrial cardiac muscle cell to AV node cell signaling1
bundle of His cell action potential1
SA node cell action potential1
regulation of heart rate1
cardiac conduction1
potassium channel activity1
voltage-gated monoatomic cation channel activity1
kinase binding1
actinin binding1

Protein interactions and networks

STRING

1914 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
KCNA5KCNAB1Q14722950
KCNA5KCNA2P16389942
KCNA5KCNE2Q9Y6J6872
KCNA5KCNH2Q12809862
KCNA5DLG1Q12959861
KCNA5KCNAB2Q13303857
KCNA5KCNAB3O43448836
KCNA5SCN5AQ14524827
KCNA5KCNIP2Q9NS61815
KCNA5TPI1P00938802
KCNA5KCNE1P15382709
KCNA5KCNJ8Q15842707
KCNA5KCNK3O14649705
KCNA5KCNJ3P48549703
KCNA5KCNJ2P48049684

IntAct

263 interactions, top by confidence:

ABTypeScore
KCNA5SCRIBpsi-mi:“MI:0915”(physical association)0.610
DLG1KCNA5psi-mi:“MI:0915”(physical association)0.610
KCNA5SCRIBpsi-mi:“MI:0407”(direct interaction)0.610
KCNA5DLG1psi-mi:“MI:0407”(direct interaction)0.610
KCNA5TMEM107psi-mi:“MI:0915”(physical association)0.560
KCNA5TMEM223psi-mi:“MI:0914”(association)0.530
KCNA5MAST2psi-mi:“MI:0407”(direct interaction)0.440
KCNA5SNTB1psi-mi:“MI:0407”(direct interaction)0.440
KCNA5SNTA1psi-mi:“MI:0407”(direct interaction)0.440
KCNA5MAGI2psi-mi:“MI:0407”(direct interaction)0.440
KCNA5PTPN3psi-mi:“MI:0407”(direct interaction)0.440
KCNA5SNTB2psi-mi:“MI:0407”(direct interaction)0.440
MAST1KCNA5psi-mi:“MI:0407”(direct interaction)0.440
KCNA5SNTG1psi-mi:“MI:0407”(direct interaction)0.440
KCNA5MAGI1psi-mi:“MI:0407”(direct interaction)0.440
NHERF2KCNA5psi-mi:“MI:0407”(direct interaction)0.440
RHPN1KCNA5psi-mi:“MI:0407”(direct interaction)0.440
KCNA5SNTG2psi-mi:“MI:0407”(direct interaction)0.440
KCNA5SNX27psi-mi:“MI:0407”(direct interaction)0.440
KCNA5DLG4psi-mi:“MI:0407”(direct interaction)0.440
KCNA5PDZK1psi-mi:“MI:0407”(direct interaction)0.440
KCNA5PDZRN3psi-mi:“MI:0407”(direct interaction)0.440
KCNA5DLG3psi-mi:“MI:0407”(direct interaction)0.440
MAGI3KCNA5psi-mi:“MI:0407”(direct interaction)0.440
ARHGEF12KCNA5psi-mi:“MI:0407”(direct interaction)0.440
KCNA5LIMK1psi-mi:“MI:0407”(direct interaction)0.440

BioGRID (111): KCNA5 (Reconstituted Complex), KCNA5 (Biochemical Activity), STUB1 (Affinity Capture-Western), KCNA5 (Affinity Capture-Western), HSPA8 (Affinity Capture-Western), KCNA5 (Affinity Capture-Western), KCNA3 (Affinity Capture-MS), NPHP1 (Affinity Capture-MS), KCNA5 (Affinity Capture-MS), KCNAB2 (Affinity Capture-MS), CYB5R1 (Affinity Capture-MS), ADCK2 (Affinity Capture-MS), ATP2A3 (Affinity Capture-MS), GOLM1 (Affinity Capture-MS), DOLK (Affinity Capture-MS)

ESM2 similar proteins: A4K2M4, A4K2N8, A4K2P6, A4K2Q6, A4K2R3, A4K2S2, A4K2T1, A4K2V2, A4K2W6, A4K2X4, A4K2Y2, D4ADX7, O35173, O35174, O88758, P15384, P15388, P16390, P17658, P17659, P19024, P22001, P22460, P22462, P25122, P48547, P50638, P59053, P59994, P79197, Q03719, Q03721, Q14B80, Q17ST2, Q61762, Q61923, Q63734, Q7TSH7, Q8CFS6, Q8R1C0

Diamond homologs: A2BDX4, A4K2M4, A4K2N8, A4K2P6, A4K2Q6, A4K2R3, A4K2S2, A4K2T1, A4K2V2, A4K2W6, A4K2X4, A4K2Y2, A6H8H5, D4AD53, D4ADX7, O18868, O35173, O35174, O73606, O88758, O88759, P10499, P15384, P15385, P15387, P15388, P16388, P16389, P16390, P17970, P19024, P22001, P22459, P22460, P22462, P25122, P48547, P50638, P59053, P59994

SIGNOR signaling

6 interactions.

AEffectBMechanism
AMPK“down-regulates activity”KCNA5phosphorylation
PRKAA1“down-regulates activity”KCNA5phosphorylation

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 119 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Tight junction interactions629.5×4e-06
Assembly and cell surface presentation of NMDA receptors827.1×7e-08
Neurexins and neuroligins1026.2×1e-09
Protein-protein interactions at synapses517.7×2e-04
SUMOylation of transcription cofactors516.2×2e-04
Signaling by Rho GTPases94.1×3e-03
Signaling by Rho GTPases, Miro GTPases and RHOBTB394.0×3e-03

GO biological processes:

GO termPartnersFoldFDR
establishment or maintenance of epithelial cell apical/basal polarity1369.3×7e-19
protein localization to synapse642.2×6e-07
receptor clustering740.1×7e-08
regulation of postsynaptic membrane neurotransmitter receptor levels627.3×6e-06
establishment or maintenance of cell polarity622.1×2e-05
bicellular tight junction assembly515.2×7e-04
Rho protein signal transduction511.4×2e-03
protein-containing complex assembly1010.4×4e-06

Disease & clinical

Clinical variants and AI predictions

ClinVar

597 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic3
Likely pathogenic0
Uncertain significance431
Likely benign112
Benign14

Top pathogenic / likely-pathogenic (3)

Variant IDHGVSClassification
127137NM_002234.4(KCNA5):c.143A>G (p.Glu48Gly)Pathogenic
13469NM_002234.4(KCNA5):c.1123G>T (p.Glu375Ter)Pathogenic
13472NM_002234.4(KCNA5):c.1828G>A (p.Glu610Lys)Pathogenic

SpliceAI

4 predictions. Top by Δscore:

VariantEffectΔscore
12:5044086:GC:Gdonor_gain0.3000
12:5044084:GAGC:Gdonor_gain0.2100
12:5045495:A:AGacceptor_gain0.2000
12:5045496:G:GGacceptor_gain0.2000

AlphaMissense

3973 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
12:5045150:T:CF335L1.000
12:5045152:C:AF335L1.000
12:5045152:C:GF335L1.000
12:5045383:G:CK412N1.000
12:5045383:G:TK412N1.000
12:5045385:T:CL413P1.000
12:5045406:T:CL420P1.000
12:5045448:T:CL434P1.000
12:5045489:T:CF448L1.000
12:5045491:C:AF448L1.000
12:5045491:C:GF448L1.000
12:5045495:A:CS450R1.000
12:5045497:T:AS450R1.000
12:5045497:T:GS450R1.000
12:5045561:T:AW472R1.000
12:5045561:T:CW472R1.000
12:5045564:T:AW473R1.000
12:5045564:T:CW473R1.000
12:5045566:G:CW473C1.000
12:5045566:G:TW473C1.000
12:5045591:G:CG482R1.000
12:5045592:G:AG482D1.000
12:5045597:G:TG484W1.000
12:5045598:G:AG484E1.000
12:5045598:G:TG484V1.000
12:5045610:C:AP488H1.000
12:5045636:G:CG497R1.000
12:5045637:G:AG497D1.000
12:5045645:T:CC500R1.000
12:5045646:G:AC500Y1.000

dbSNP variants (sampled 300 via entrez): RS1000040930 (12:5041992 C>T), RS1001365251 (12:5043012 T>C), RS1001489344 (12:5043082 C>G), RS1001994004 (12:5043688 C>T), RS1003032973 (12:5044142 C>A,G,T), RS1003104758 (12:5043943 G>A,T), RS1003591437 (12:5044377 C>G), RS1004890199 (12:5042699 T>A), RS1005224382 (12:5043917 G>A), RS1005838107 (12:5046909 G>A), RS1007066249 (12:5046177 C>A,G,T), RS1007150347 (12:5043994 C>T), RS1007168973 (12:5041908 T>C), RS1007219827 (12:5042221 C>G,T), RS1008775209 (12:5046305 T>A)

Disease associations

OMIM: gene MIM:176267 | disease phenotypes: MIM:612240, MIM:178600, MIM:601144

GenCC curated gene-disease

DiseaseClassificationInheritance
atrial fibrillation, familial, 7ModerateAutosomal dominant
familial atrial fibrillationSupportiveAutosomal dominant

Mondo (8): atrial fibrillation, familial, 7 (MONDO:0012828), third-degree atrioventricular block (MONDO:0000468), pulmonary hypertension, primary, 1 (MONDO:0024533), pulmonary arterial hypertension (MONDO:0015924), Brugada syndrome 1 (MONDO:0011001), heart disorder (MONDO:0005267), cardiac rhythm disease (MONDO:0007263), familial atrial fibrillation (MONDO:0018054)

Orphanet (3): Idiopathic/heritable pulmonary arterial hypertension (Orphanet:422), Pulmonary arterial hypertension (Orphanet:182090), Brugada syndrome (Orphanet:130)

HPO phenotypes

21 total (21 of 21 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0001279Syncope
HP:0001658Myocardial infarction
HP:0001688Sinus bradycardia
HP:0001727Thromboembolic stroke
HP:0001907Thromboembolism
HP:0001962Palpitations
HP:0002094Dyspnea
HP:0002321Vertigo
HP:0003546Exercise intolerance
HP:0003596Middle age onset
HP:0004754Permanent atrial fibrillation
HP:0004757Paroxysmal atrial fibrillation
HP:0005110Atrial fibrillation
HP:0005184Prolonged QTc interval
HP:0006699Premature atrial contractions
HP:0012248Prolonged PR interval
HP:0012378Fatigue
HP:0025708Early young adult onset
HP:0025710Late young adult onset
HP:0100749Chest pain

GWAS associations

2 associations (top):

StudyTraitp-value
GCST006658_2Longevity2.000000e-06
GCST012490_350Femur bone mineral density x serum urate levels interaction2.000000e-13

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0004531urate measurement

MeSH disease descriptors (3)

DescriptorNameTree numbers
D006331Heart DiseasesC14.280
D000081029Pulmonary Arterial HypertensionC08.381.423.847
C567389Atrial Fibrillation, Familial, 7 (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL2362996 (PROTEIN FAMILY), CHEMBL4306 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

8 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 165,592 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1201729DRONEDARONE HYDROCHLORIDE4587
CHEMBL12713SERTINDOLE48,984
CHEMBL1294QUINIDINE471,943
CHEMBL193NIFEDIPINE474,353
CHEMBL2107383VERNAKALANT HYDROCHLORIDE4115
CHEMBL652FLECAINIDE49,582
CHEMBL4094440BMS-919373228
CHEMBL602070BMS-3941361

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: vgic — Voltage-gated potassium channels (Kv)

Most potent curated ligand interactions (12 total), top 12:

LigandActionAffinityParameter
DPO-1Channel blocker7.3pIC50
clofiliumChannel blocker6.9pIC50
S9947Channel blocker6.4pIC50
dronedaroneInhibition5.63pIC50
bupivacaineChannel blocker5.4pKd
quinidineChannel blocker5.2pKd
resiniferatoxinChannel blocker4.6pKd
propafenoneChannel blocker4.4pIC50
nifedipineChannel blocker4.1pKd
flecainideChannel blocker4.0pKd
diltiazemPore blocker3.9pKd
fampridinePore blocker3.6pKd

Binding affinities (BindingDB)

15 measured of 15 human assays (15 total across all organisms); most potent 15 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
1-methyl-3-[3-[2-pyridin-3-ylethyl(pyridin-4-ylmethyl)amino]propoxy]quinolin-2-oneIC50300 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
1-ethyl-6-[3-[2-pyridin-3-ylethyl(pyridin-4-ylmethyl)amino]propoxy]quinolin-2-oneIC50320 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
6-[5-[bis(pyridin-3-ylmethyl)amino]pentoxy]-1-methylquinolin-2-oneIC50510 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
1-methyl-6-[5-[3-phenylpropyl(pyridin-3-yl)amino]pentoxy]quinolin-2-oneIC50600 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
1-ethyl-3,3,5-trimethyl-7-[3-[2-(2-methyl-4-oxofuro[3,2-c]pyridin-5-yl)ethyl-(pyridin-4-ylmethyl)amino]propyl]-1,5-benzodiazepine-2,4-dioneIC50620 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
1-ethyl-7-[[[2-(methoxymethyl)-3-pyridinyl]methyl-[2-(2-methyl-4-oxofuro[3,2-c]pyridin-5-yl)ethyl]amino]methyl]-3,3,5-trimethyl-1,5-benzodiazepine-2,4-dioneIC50630 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
1-methyl-6-[5-[3-phenylpropyl(pyridin-3-ylmethyl)amino]pentoxy]quinolin-2-oneIC50810 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
N-[(1-ethyl-3,3,5-trimethyl-2,4-dioxo-1,5-benzodiazepin-7-yl)methyl]-2-(1-methylindol-3-yl)-N-(2-pyridin-3-ylethyl)acetamideIC50860 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
6-[3-[2-pyridin-3-ylethyl(pyridin-4-ylmethyl)amino]propoxy]-3,4-dihydro-2H-isoquinolin-1-oneIC50940 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
N-[5-(1-methyl-2-oxoquinolin-6-yl)oxypentyl]-N-(2-pyridin-3-ylethyl)pyridine-3-carboxamideIC501400 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
N-methyl-N-[2-[3-(1-methyl-2-oxoquinolin-6-yl)oxypropyl-(pyridin-4-ylmethyl)amino]ethyl]benzamideIC501700 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
1-ethyl-7-[[[2-(methoxymethyl)-3-pyridinyl]methyl-[2-(7-methyl-4-oxofuro[3,2-c]pyridin-5-yl)ethyl]amino]methyl]-3,3,5-trimethyl-1,5-benzodiazepine-2,4-dioneIC502900 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation
CHEMBL4539540IC503400 nM
CHEMBL4474540IC505600 nM
1-methyl-6-[3-[2-pyridin-2-ylethyl(pyridin-4-ylmethyl)amino]propoxy]quinolin-2-oneIC506300 nMUS-9212187: Nitrogen-containing compounds and pharmaceutical compositions thereof for the treatment of atrial fibrillation

ChEMBL bioactivities

795 potent at pChembl≥5 of 850 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.82Ki0.15nMCHEMBL5722941
9.74IC500.18nMCHEMBL5722941
8.11IC507.7nMCHEMBL1256851
8.05IC509nMCHEMBL4065169
8.00EC5010nMCHEMBL3961395
8.00EC5010nMCHEMBL3940526
7.96IC5011nMCHEMBL4065169
7.96IC5011nMCHEMBL4104525
7.92EC5012nMCHEMBL3960875
7.82IC5015nMCHEMBL571976
7.70EC5020nMCHEMBL3899148
7.68IC5021nMCHEMBL216281
7.66IC5022nMCHEMBL3298226
7.64IC5023nMCHEMBL3298228
7.64IC5023nMCHEMBL4085436
7.62IC5024nMCHEMBL3356073
7.60IC5025nMCHEMBL3356073
7.60EC5025nMCHEMBL3930613
7.58IC5026nMCHEMBL4105245
7.55IC5028nMCHEMBL3622361
7.54IC5029nMCHEMBL4104525
7.52IC5030nMCHEMBL3622355
7.52IC5030nMCHEMBL4062996
7.52IC5030nMCHEMBL567671
7.52IC5030nMCHEMBL1088844
7.50IC5032nMCHEMBL3623054
7.48IC5033nMCHEMBL4075394
7.48IC5033nMCHEMBL288131
7.47IC5034nMCHEMBL3356074
7.47IC5034nMCHEMBL3622346
7.44IC5036nMCHEMBL385809
7.43IC5037nMCHEMBL2331989
7.40IC5040nMCHEMBL4521294
7.39IC5041nMCHEMBL4095750
7.37IC5043nMCHEMBL3298140
7.35EC5045nMCHEMBL444449
7.35EC5045nMCHEMBL3899683
7.34IC5046nMBMS-919373
7.34IC5046nMCHEMBL260684
7.33IC5047nMCHEMBL3623053
7.32IC5048nMCHEMBL2331990
7.32IC5048nMCHEMBL567235
7.30EC5050nMCHEMBL3958206
7.30IC5050nMCHEMBL4532101
7.30IC5050nMCHEMBL4450487
7.30IC5050nMCHEMBL288131
7.30IC5050nMBMS-394136
7.28IC5052nMCHEMBL3622360
7.28IC5052nMCHEMBL3623052
7.28EC5052nMCHEMBL3982686

PubChem BioAssay actives

705 with measured affinity, of 1302 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
3-[(1R,2aS,4S,5aS,8aS,10S,11aR,14aS,16S,17aS,19S,20aS,22S,23aS,25S,26aS,28S,29aS,31R,32aS,35aS,36R,38aS,39S,41aS,42S,44aS,45S,48R,50aS,51S,53aS,54S,56aS,57S,59aS,60S,63S,66S,69S,72S,75S,78S,87R,93S,96S,99S)-17a,20a,23a,53a,63-pentakis(4-aminobutyl)-31-[[(2S)-2-[[(2S)-6-amino-2-[[(2S)-5-carbamimidamido-2-[[(2S)-5-carbamimidamido-2-[[(2S)-1-[(2S)-5-oxopyrrolidine-2-carbonyl]pyrrolidine-2-carbonyl]amino]pentanoyl]amino]pentanoyl]amino]hexanoyl]amino]-4-methylpentanoyl]amino]-16,29a,72,78-tetrakis(2-amino-2-oxoethyl)-14a,26a-bis(3-amino-3-oxopropyl)-2a,38a,66-tribenzyl-28,50a,57-tris[(2S)-butan-2-yl]-4,5a,19,42,45,69-hexakis(3-carbamimidamidopropyl)-51,54-bis(2-carboxyethyl)-56a,99-bis(carboxymethyl)-36-[[(2S,3S)-1-(carboxymethylamino)-3-methyl-1-oxopentan-2-yl]carbamoyl]-39,60-bis[(1R)-1-hydroxyethyl]-75,93-bis(hydroxymethyl)-32a,35a,59a-tris[(4-hydroxyphenyl)methyl]-22-(1H-imidazol-4-ylmethyl)-96-(1H-indol-3-ylmethyl)-41a-methyl-25-(2-methylpropyl)-1a,3,4a,6,7a,9,10a,13a,15,16a,18,19a,21,22a,24,25a,27,28a,30,31a,34a,37a,38,40a,41,43a,44,47,49a,50,52a,53,55a,56,58a,59,61a,62,65,68,71,74,77,80,83,86,89,92,95,98-pentacontaoxo-33,34,63a,64a,67a,68a-hexathia-a,2,3a,5,6a,8,9a,12a,14,15a,17,18a,20,21a,23,24a,26,27a,29,30a,33a,36a,37,39a,40,42a,43,46,48a,49,51a,52,54a,55,57a,58,60a,61,64,67,70,73,76,79,82,85,88,91,94,97-pentacontazapentacyclo[85.74.4.448,111.010,14.0144,148]nonahexacontahectan-8a-yl]propanoic acid2198828: Binding affinity to KV channel (unknown origin) assessed as inhibition constantki0.0001uM
4-(4-phenylbutoxy)furo[3,2-g]chromen-7-one2136237: Inhibition of Kv1.5 (unknown origin)ic500.0077uM
N-[6-[(1S)-1-(4-fluorophenyl)-2,2-dipyridin-3-ylethyl]-2-pyridinyl]methanesulfonamide1437176: Inhibition of Kv1.5 (unknown origin)ic500.0090uM
(1R)-1-[2-(3,5-dichlorophenyl)-3-pyridinyl]-2,2-dipyridin-3-ylethanol1437177: Inhibition of Kv1.5 mediated ultra-rapid delayed rectifier current Ikur in human atrial myocytes by voltage-patch clamp electrophysiology methodic500.0110uM
7-(3,4-dichlorophenyl)-6-(5-fluoro-1-methylbenzimidazol-2-yl)-5-methyl-4,7-dihydropyrazolo[1,5-a]pyrimidine449154: Inhibition of human Kv1.5 channel expressed in mouse L929 cellsic500.0150uM
[(E)-(2,3-diethyl-1-methyl-6,7-dihydro-5H-indol-4-ylidene)amino] N-phenylcarbamate274083: Inhibition of Kv1.5 expressed in LTK- cells by whole cell patch clamp assayic500.0210uM
8-methoxy-N-(2-methyl-2-phenylpropyl)isoquinolin-1-amine1224174: Inhibition of human Kv1.5 expressed in mouse L929 cells assessed as inhibition of currentic500.0220uM
5-methoxy-4-[(2-methyl-2-phenylpropyl)amino]-1H-quinazolin-2-one1224174: Inhibition of human Kv1.5 expressed in mouse L929 cells assessed as inhibition of currentic500.0230uM
2-(2-chlorophenyl)-3-(2,2-dipyridin-3-ylethyl)pyridine1437176: Inhibition of Kv1.5 (unknown origin)ic500.0230uM
4-methoxy-N-(2-methyl-2-phenylpropyl)-1,2-benzothiazol-3-amine1249323: Inhibition of human KV1.5 expressed in mouse L929 cells assessed as decrease in ultrarapid potassium current amplitudeic500.0240uM
2-chloro-3-[2-[2-(2-chlorophenyl)-3-pyridinyl]-1-pyridin-3-ylethyl]pyridine1437176: Inhibition of Kv1.5 (unknown origin)ic500.0260uM
2,2,2-trifluoroethyl N-[4-[[(4-methoxy-1,1-dioxo-1,2-benzothiazol-3-ylidene)amino]methyl]-4-phenylcyclohexyl]carbamate1249323: Inhibition of human KV1.5 expressed in mouse L929 cells assessed as decrease in ultrarapid potassium current amplitudeic500.0280uM
7-(3,4-dichlorophenyl)-6-(5-fluoro-1-methylbenzimidazol-2-yl)-5-(methoxymethyl)-4,7-dihydropyrazolo[1,5-a]pyrimidine449154: Inhibition of human Kv1.5 channel expressed in mouse L929 cellsic500.0300uM
[4-[[(4-methoxy-1,1-dioxo-1,2-benzothiazol-3-ylidene)amino]methyl]-4-phenylcyclohexyl] N-[4-(dimethylamino)phenyl]carbamate1249323: Inhibition of human KV1.5 expressed in mouse L929 cells assessed as decrease in ultrarapid potassium current amplitudeic500.0300uM
[[(1S,2S,5R)-5-methyl-2-propan-2-ylcyclohexyl]-phenylphosphoryl]benzene476474: Inhibition of human Kv1.5 channel expressed in CHO cells by whole cell patch clamp assayic500.0300uM
2-(3-chlorophenyl)-3-(2,2-dipyridin-3-ylethyl)pyridine1437176: Inhibition of Kv1.5 (unknown origin)ic500.0300uM
4-methoxy-1,1-dioxo-N-[[1-phenyl-4-(tetrazol-1-yl)cyclohexyl]methyl]-1,2-benzothiazol-3-imine1249323: Inhibition of human KV1.5 expressed in mouse L929 cells assessed as decrease in ultrarapid potassium current amplitudeic500.0320uM
N-[(2R,3R)-3-[(4-ethylphenyl)sulfonylamino]-2-hydroxy-2,3-dihydro-1H-inden-5-yl]-3-methoxybenzamide290686: Inhibition of human Kv1.5 channel expressed in mouse L929 cellsic500.0330uM
3-(2,2-dipyridin-3-ylethyl)-2-[3-(trifluoromethoxy)phenyl]pyridine1437176: Inhibition of Kv1.5 (unknown origin)ic500.0330uM
4-methoxy-3-(2-methyl-2-phenylpropyl)iminoisoindol-1-one1249323: Inhibition of human KV1.5 expressed in mouse L929 cells assessed as decrease in ultrarapid potassium current amplitudeic500.0340uM
4-[[(4-methoxy-1,1-dioxo-1,2-benzothiazol-3-ylidene)amino]methyl]-4-phenylcyclohexan-1-ol1249323: Inhibition of human KV1.5 expressed in mouse L929 cells assessed as decrease in ultrarapid potassium current amplitudeic500.0340uM
4-[3-(2-fluorophenyl)propanoylamino]-3-phenyl-N,N-di(propan-2-yl)-2-pyridin-3-ylbutanamide274038: Inhibition of Kv1.5ic500.0360uM
(7R)-6-(2-cyclopentyl-1,2,4-triazol-3-yl)-7-(3,4-dichlorophenyl)-5-methyl-4,7-dihydropyrazolo[1,5-a]pyrimidine730777: Antagonist activity at human Kv1.5 expressed in mouse L929 cells assessed as inhibition of delayed rectifier repolarization current by patch clamp assayic500.0370uM
5-phenyl-2-pyridin-4-yl-N-(pyridin-2-ylmethyl)quinazolin-4-amine1630993: Inhibition of human Kv1.5 transfected in mouse LTK cellsic500.0400uM
3-(2,2-dipyridin-3-ylethyl)-2-(3-methoxyphenyl)pyridine1437176: Inhibition of Kv1.5 (unknown origin)ic500.0410uM
4-methoxy-N-(2-methyl-2-phenylpropyl)-1,2-benzoxazol-3-amine1224174: Inhibition of human Kv1.5 expressed in mouse L929 cells assessed as inhibition of currentic500.0430uM
N-[(8S)-8-[(4-ethylphenyl)sulfonylamino]-5,6,7,8-tetrahydronaphthalen-2-yl]-N-[(6-methyl-2-pyridinyl)methyl]-3-phenylpropanamide329660: Inhibition of human Kv1.5 channel expressed in mouse L929 cells assessed as blockade of ultra rapidly activating potassium current by voltage clamp techniqueic500.0460uM
5-[5-phenyl-4-(pyridin-2-ylmethylamino)quinazolin-2-yl]pyridine-3-sulfonamide1447683: Inhibition of recombinant human Kv1.5 expressed in mouse L929 cells by patch clamp assayic500.0460uM
N-[4-[[(4-methoxy-1,1-dioxo-1,2-benzothiazol-3-ylidene)amino]methyl]-4-phenylcyclohexyl]pyrimidin-2-amine1249323: Inhibition of human KV1.5 expressed in mouse L929 cells assessed as decrease in ultrarapid potassium current amplitudeic500.0470uM
7-(3,4-dichlorophenyl)-6-(5-fluoro-1-propylbenzimidazol-2-yl)-5-methyl-4,7-dihydropyrazolo[1,5-a]pyrimidine449154: Inhibition of human Kv1.5 channel expressed in mouse L929 cellsic500.0480uM
(7R)-6-(2-cyclobutyl-1,2,4-triazol-3-yl)-7-(3,4-dichlorophenyl)-5-methyl-4,7-dihydropyrazolo[1,5-a]pyrimidine730777: Antagonist activity at human Kv1.5 expressed in mouse L929 cells assessed as inhibition of delayed rectifier repolarization current by patch clamp assayic500.0480uM
[(7R)-7-(3,4-dichlorophenyl)-5-methyl-4,7-dihydropyrazolo[1,5-a]pyrimidin-6-yl]-[(2S)-2-(4-fluorophenyl)pyrrolidin-1-yl]methanone457613: Inhibition of human Kv1.5 channel expressed in mouse L929 cellsic500.0500uM
5-phenyl-4-(pyridin-2-ylmethylamino)quinazoline-2-carbonitrile1630993: Inhibition of human Kv1.5 transfected in mouse LTK cellsic500.0500uM
5-phenyl-N-(pyridin-2-ylmethyl)-2-(1,3-thiazol-5-yl)quinazolin-4-amine1630993: Inhibition of human Kv1.5 transfected in mouse LTK cellsic500.0500uM
propan-2-yl N-[4-[[(4-methoxy-1,1-dioxo-1,2-benzothiazol-3-ylidene)amino]methyl]-4-phenylcyclohexyl]carbamate1249323: Inhibition of human KV1.5 expressed in mouse L929 cells assessed as decrease in ultrarapid potassium current amplitudeic500.0520uM
3-[[4-(diethylsulfamoylamino)-1-phenylcyclohexyl]methylimino]-4-methoxy-1,1-dioxo-1,2-benzothiazole1249323: Inhibition of human KV1.5 expressed in mouse L929 cells assessed as decrease in ultrarapid potassium current amplitudeic500.0520uM
ethyl N-[4-[[(4-methoxy-1,1-dioxo-1,2-benzothiazol-3-ylidene)amino]methyl]-4-phenylcyclohexyl]carbamate1249323: Inhibition of human KV1.5 expressed in mouse L929 cells assessed as decrease in ultrarapid potassium current amplitudeic500.0550uM
6-[1-pyridin-3-yl-2-[2-[3-(trifluoromethyl)phenyl]-3-pyridinyl]ethyl]pyridin-2-amine1437176: Inhibition of Kv1.5 (unknown origin)ic500.0560uM
6-(5-chloro-1-ethylbenzimidazol-2-yl)-7-(3,4-dichlorophenyl)-5-methyl-4,7-dihydropyrazolo[1,5-a]pyrimidine449154: Inhibition of human Kv1.5 channel expressed in mouse L929 cellsic500.0570uM
(3S,4R)-4-[butyl-(4-ethylphenyl)sulfonylamino]-3-hydroxy-2,2-dimethyl-N-(2-phenylethyl)-3,4-dihydrochromene-6-carboxamide290686: Inhibition of human Kv1.5 channel expressed in mouse L929 cellsic500.0570uM
(7R)-6-(2-cyclohexyl-1,2,4-triazol-3-yl)-7-(3,4-dichlorophenyl)-5-methyl-4,7-dihydropyrazolo[1,5-a]pyrimidine730777: Antagonist activity at human Kv1.5 expressed in mouse L929 cells assessed as inhibition of delayed rectifier repolarization current by patch clamp assayic500.0590uM
3-cyano-N-(2-hydroxyethyl)-6-methoxy-4-phenylisoquinoline-1-carboxamide272574: Antagonist activity at human Kv1.5 channel expressed in CHO cell membrane by HT clamp assayic500.0600uM
N-[4-[[(4-methoxy-1,1-dioxo-1,2-benzothiazol-3-ylidene)amino]methyl]-4-phenylcyclohexyl]ethanesulfonamide1249323: Inhibition of human KV1.5 expressed in mouse L929 cells assessed as decrease in ultrarapid potassium current amplitudeic500.0600uM
(2S)-3-[[(1S,2S)-2-(dipropylamino)-1,2-dipyridin-2-ylethyl]-propylamino]propane-1,2-diol1594159: Inhibition of Kv1.5 in human atrial myocytes assessed as blockade of Ikur currentic500.0600uM
N-[(3S,4R)-6-[(2S)-2-[(2,6-dimethylanilino)methyl]pyrrolidine-1-carbonyl]-3-hydroxy-2,2-dimethyl-3,4-dihydrochromen-4-yl]-4-ethylbenzenesulfonamide329660: Inhibition of human Kv1.5 channel expressed in mouse L929 cells assessed as blockade of ultra rapidly activating potassium current by voltage clamp techniqueic500.0600uM
5-phenyl-2-pyridin-3-yl-N-(pyridin-2-ylmethyl)quinazolin-4-amine1447683: Inhibition of recombinant human Kv1.5 expressed in mouse L929 cells by patch clamp assayic500.0600uM
6-[2-[2-(3,5-dichlorophenyl)-3-pyridinyl]-1-pyridin-3-ylethyl]pyridin-2-amine1437176: Inhibition of Kv1.5 (unknown origin)ic500.0620uM
7-(3,4-dichlorophenyl)-6-(4-fluoro-1-methylbenzimidazol-2-yl)-5-methyl-4,7-dihydropyrazolo[1,5-a]pyrimidine449154: Inhibition of human Kv1.5 channel expressed in mouse L929 cellsic500.0640uM
3-[2-(2,2-dipyridin-3-ylethyl)phenyl]-N,N-dimethylbenzamide1437176: Inhibition of Kv1.5 (unknown origin)ic500.0640uM
3-[2-(2,2-dipyridin-3-ylethyl)phenyl]pyridine1437176: Inhibition of Kv1.5 (unknown origin)ic500.0640uM

CTD chemical–gene interactions

34 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
vernakalantaffects binding, decreases activity2
Cisplatinincreases response to substance, affects expression2
Phenylmercuric Acetateaffects cotreatment, decreases expression2
Tretinoinincreases expression2
Terfenadinedecreases activity2
terbufosincreases methylation1
trichostatin Adecreases expression1
diallyl trisulfidedecreases activity1
testosterone-3-carboxymethyloxime-bovine serum albumin conjugateaffects expression1
ebastinedecreases activity1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, decreases expression1
dorsomorphinaffects cotreatment, decreases expression1
Decitabineaffects expression1
Sunitinibincreases expression1
Acroleinincreases expression, decreases reaction1
Benzo(a)pyreneaffects methylation, decreases methylation1
Carbamazepineaffects expression1
Diethylhexyl Phthalatedecreases expression1
Doxorubicinincreases response to substance1
Fonofosincreases methylation1
Eugenoldecreases activity1
Fluorouracilincreases response to substance1
Ketoconazoledecreases activity1
Parathionincreases methylation1
Pergolidedecreases activity1
Potassiumincreases transport1
Progesteronedecreases activity1
Rotenonedecreases reaction, increases expression1
Tamoxifendecreases expression1
Valproic Acidaffects expression1

ChEMBL screening assays

152 unique, capped per target: 130 binding, 14 functional, 5 admet, 3 toxicity

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1787442BindingInhibition of human recombinant Kv channel at 10 uM by radioligand binding assayStructure-activity relationships of pyrrole based S-nitrosoglutathione reductase inhibitors: pyrrole regioisomers and propionic acid replacement. — Bioorg Med Chem Lett
CHEMBL5522525ToxicityInhibition of human K+ channel by automated electrophysiologyDiscovery of Clinical Candidate AZD5462, a Selective Oral Allosteric RXFP1 Agonist for Treatment of Heart Failure. — J Med Chem
CHEMBL4039283ADMETInhibition of human Kv1.5 expressed in CHO cells by automated patch clamp assayDiscovery of N-(5-Fluoropyridin-2-yl)-6-methyl-4-(pyrimidin-5-yloxy)picolinamide (VU0424238): A Novel Negative Allosteric Modulator of Metabotropic Glutamate Receptor Subtype 5 Selected for Clinical Evaluation. — J Med Chem

Cellosaurus cell lines

10 cell lines: 6 transformed cell line, 2 spontaneously immortalized cell line, 2 induced pluripotent stem cell

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_C0Y1B’SYS CHO Kv1.5Spontaneously immortalized cell lineFemale
CVCL_E5JIHEK293 Kv1.5Transformed cell lineFemale
CVCL_E5JJHEK293 Kv1.5-12PATransformed cell lineFemale
CVCL_E5JKHEK293 Kv1.5-DeltaN209Transformed cell lineFemale
CVCL_E5JLHEK293 Kv1.5-DeltaProTransformed cell lineFemale
CVCL_E5JMHEK293 Kv1.5-Kv1.4NTTransformed cell lineFemale
CVCL_H517HEK293/hKv1.5Transformed cell lineFemale
CVCL_LC65PrecisION hKv1.5-CHOSpontaneously immortalized cell lineFemale
CVCL_QX79UNIBSi001-AInduced pluripotent stem cellMale
CVCL_ZB29ZZUSAHi001-AInduced pluripotent stem cellFemale

Clinical trials (associated diseases)

302 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT04931693PHASE4COMPLETEDPECs Block for Pacemaker Insertion in Children
NCT05666219PHASE4WITHDRAWNReversal of Complete Heart Block With Aminophylline in Inferior Wall Myocardial Infarction Patients
NCT00058929PHASE4COMPLETEDA Transition Study From Flolan® to Remodulin® in Patients With Pulmonary Arterial Hypertension
NCT00303459PHASE4COMPLETEDEffects of the Combination of Bosentan and Sildenafil Versus Sildenafil Monotherapy on Pulmonary Arterial Hypertension (PAH)
NCT00323297PHASE4COMPLETEDAssess the Efficacy and Safety of Sildenafil When Added to Bosentan in the Treatment of Pulmonary Arterial Hypertension
NCT00367770PHASE4COMPLETEDBREATHE 5-OL: Tracleer (Bosentan) in Patients With Pulmonary Arterial Hypertension Related to Eisenmenger Physiology
NCT00403650PHASE4COMPLETEDInhaled Iloprost for Sarcoidosis-associated Pulmonary Hypertension
NCT00430716PHASE4TERMINATEDTo Assess The Efficacy and Safety Of Oral Sildenafil in the Treatment of Pulmonary Arterial Hypertension.
NCT00433329PHASE4COMPLETEDCombination Therapy in Pulmonary Arterial Hypertension
NCT00439946PHASE4TERMINATEDSafety, Efficacy, and Treatment Satisfaction Switching From Flolan to Remodulin Using the Crono Five Ambulatory Pump in Patients With PAH
NCT00483626PHASE4UNKNOWNHemodynamic Response After Six Months of Sildenafil
NCT00494533PHASE4TERMINATEDStudy of Intravenous Remodulin in Patients in India With Pulmonary Arterial Hypertension
NCT00617305PHASE4COMPLETEDStudy of Add-on Ambrisentan Therapy to Background Phosphodiesterase Type-5 Inhibitor (PDE5i) Therapy in Pulmonary Arterial Hypertension (ATHENA-1)
NCT00625079PHASE4WITHDRAWNPulmonary Hypertension Secondary to Idiopathic Pulmonary Fibrosis And Treatment With Sildenafil
NCT00625469PHASE4WITHDRAWNPulmonary Arterial Hypertension Secondary to Idiopathic Pulmonary Fibrosis and Treatment With Bosentan
NCT00705588PHASE4UNKNOWNLong Acting Phosphodiesterase 5 Inhibitors as Add-on Therapy for Patients With Pulmonary Hypertension Treated With Prostanoids.
NCT00741819PHASE4COMPLETEDSafety Evaluation of Inhaled Treprostinil Administration Following Transition From Inhaled Ventavis in Pulmonary Arterial Hypertension (PAH) Subjects
NCT01042158PHASE4COMPLETEDA Clinical Trial of Ambrisentan and Tadalafil in Pulmonary Arterial Hypertension Associated With Systemic Sclerosis
NCT01105091PHASE4COMPLETEDEpoprostenol for Injection in Pulmonary Arterial Hypertension
NCT01105117PHASE4COMPLETEDEpoprostenol for Injection in Pulmonary Arterial Hypertension - Extension of AC-066A401
NCT01268553PHASE4COMPLETEDTransition From Injectable Prostacyclin Medication to Inhaled Prostacyclin Medication
NCT01302444PHASE4TERMINATEDTreprostinil Combined With Tadalafil for Pulmonary Hypertension
NCT01330108PHASE4COMPLETEDSafely Change From Bosentan to Ambrisentan in Pulmonary Hypertension
NCT01433328PHASE4TERMINATEDLidocaine Subcutaneous Infusion for Control of Treprostinil Related Site Pain
NCT01508780PHASE4WITHDRAWNCombined Use of Angiography, Optical Coherence Tomography and Intravascular Ultrasound in Evaluation of Pulmonary Vascular Structure and Function in Patients With Pulmonary Arterial Hypertension Treated With Oral Bosentan
NCT01615627PHASE4WITHDRAWNHypotonic Treprostinil Subcutaneous Infusion for Control of Treprostinil Related Site Pain
NCT01642407PHASE4COMPLETEDSafety And Efficacy Of Sildenafil In Children With Pulmonary Arterial Hypertension
NCT01649739PHASE4UNKNOWNVardenafil as add-on Therapy for Patients With Pulmonary Hypertension Treated With Inhaled Iloprost
NCT02060487PHASE4TERMINATEDEffects of Oral Sildenafil on Mortality in Adults With PAH
NCT02253394PHASE4TERMINATEDThe Combination Ambrisentan Plus Spironolactone in Pulmonary Arterial Hypertension Study
NCT02284737PHASE4TERMINATEDA Study to Investigate the Efficacy of PADN to Improved Functional Capacity and Hemodynamics in Patients With PAH
NCT02310672PHASE4COMPLETEDREPAIR: Right vEntricular Remodeling in Pulmonary ArterIal hypeRtension
NCT02847260PHASE4COMPLETEDSafety and Tolerability of Rapid Dose Titration of Subcutaneous Remodulin® Therapy in PAH Subjects (RAPID)
NCT02882126PHASE4WITHDRAWNAn Open Label Extension Study to Evaluate the Safety of Continued Therapy of Subcutanous Remodulin® in Pulmonary Arterial Hypertension
NCT02885012PHASE4TERMINATEDCrossover Study From Macitentan or Bosentan Over to Ambrisentan
NCT02891850PHASE4COMPLETEDRiociguat rEplacing PDE-5i Therapy evaLuated Against Continued PDE-5i thErapy
NCT02893995PHASE4WITHDRAWNSafety, Tolerability, Pharmacokinetics and Efficacy of Two Different Rates of Subcutanous Remodulin® Dose Titration in Pulmonary Arterial Hypertension
NCT02968901PHASE4TERMINATEDClinical Study Evaluating the Effects of First-line Oral cOmbination theraPy of maciTentan and tadalafIl in Patients With Newly Diagnosed pulMonary Arterial Hypertension (OPTIMA)
NCT03055221PHASE4COMPLETEDTRUST-2: Safety and Efficacy of Intravenous Remodulin® in Patients in India With Pulmonary Arterial Hypertension (PAH)
NCT03078907PHASE4COMPLETEDEffect of Selexipag on Daily Life Physical Activity of Patients With Pulmonary Arterial Hypertension.