KCNA6-AS1

Summary

KCNA6-AS1 (KCNA6 antisense RNA 1, HGNC:58276) is a long non-coding RNA gene on chromosome 12p13.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58276
Approved symbol	KCNA6-AS1
Name	KCNA6 antisense RNA 1
Location	12p13.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256988
Ensembl biotype	lncRNA
Entrez	139432815
RNAcentral	URS0000EF0241 — lncRNA, 2748 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000542988, ENST00000662877, ENST00000664363

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000542988 — 2 exons

Exon	Start	End
ENSE00002207578	4808520	4808641
ENSE00002284510	4806542	4806868

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 85.21.

Top tissues by expression

109 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.21	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.50	gold quality
tonsil	UBERON:0002372	69.83	gold quality
bone marrow cell	CL:0002092	66.86	silver quality
colonic epithelium	UBERON:0000397	66.31	silver quality
cortical plate	UBERON:0005343	65.19	gold quality
lymph node	UBERON:0000029	64.04	gold quality
ventricular zone	UBERON:0003053	62.20	gold quality
mucosa of transverse colon	UBERON:0004991	61.47	gold quality
prefrontal cortex	UBERON:0000451	61.44	gold quality
bone marrow	UBERON:0002371	61.19	gold quality
islet of Langerhans	UBERON:0000006	60.85	gold quality
cortex of kidney	UBERON:0001225	60.42	gold quality
ganglionic eminence	UBERON:0004023	59.82	gold quality
frontal cortex	UBERON:0001870	58.04	gold quality
pancreas	UBERON:0001264	57.48	gold quality
Brodmann (1909) area 9	UBERON:0013540	57.02	gold quality
sural nerve	UBERON:0015488	56.48	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	55.98	gold quality
spleen	UBERON:0002106	55.54	gold quality
cerebral cortex	UBERON:0000956	55.47	gold quality
vermiform appendix	UBERON:0001154	55.35	gold quality
calcaneal tendon	UBERON:0003701	54.94	silver quality
primary visual cortex	UBERON:0002436	54.21	gold quality
superior frontal gyrus	UBERON:0002661	53.31	gold quality
anterior cingulate cortex	UBERON:0009835	53.17	gold quality
right frontal lobe	UBERON:0002810	53.11	gold quality
monocyte	CL:0000576	52.88	gold quality
leukocyte	CL:0000738	52.37	gold quality
blood	UBERON:0000178	51.80	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.