KCNB1
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Also known as Kv2.1
Summary
KCNB1 (potassium voltage-gated channel subfamily B member 1, HGNC:6231) is a protein-coding gene on chromosome 20q13.13, encoding Potassium voltage-gated channel subfamily B member 1 (Q14721). Voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes, primarily in the brain, but also in the pancreas and cardiovascular system.
Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ion channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to have human homolog(s). This gene encodes a member of the potassium channel, voltage-gated, shab-related subfamily. This member is a delayed rectifier potassium channel and its activity is modulated by some other family members.
Source: NCBI Gene 3745 — RefSeq curated summary.
At a glance
- Gene–disease (curated): complex neurodevelopmental disorder (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 11
- Clinical variants (ClinVar): 870 total — 45 pathogenic, 53 likely-pathogenic
- Phenotypes (HPO): 62
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_004975
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6231 |
| Approved symbol | KCNB1 |
| Name | potassium voltage-gated channel subfamily B member 1 |
| Location | 20q13.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Kv2.1 |
| Ensembl gene | ENSG00000158445 |
| Ensembl biotype | protein_coding |
| OMIM | 600397 |
| Entrez | 3745 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 5 protein_coding_CDS_not_defined, 3 protein_coding, 1 nonsense_mediated_decay
ENST00000371741, ENST00000635210, ENST00000635465, ENST00000635809, ENST00000635878, ENST00000636838, ENST00000636950, ENST00000637131, ENST00000637357
RefSeq mRNA: 1 — MANE Select: NM_004975
NM_004975
CCDS: CCDS13418
Canonical transcript exons
ENST00000371741 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001455986 | 49363877 | 49374992 |
| ENSE00003790894 | 49481914 | 49482668 |
Expression profiles
Bgee: expression breadth ubiquitous, 236 present calls, max score 97.67.
FANTOM5 (CAGE): breadth broad, TPM avg 2.6528 / max 280.7087, expressed in 401 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 187742 | 1.8212 | 340 |
| 187741 | 0.3491 | 156 |
| 187739 | 0.1664 | 10 |
| 187740 | 0.1423 | 56 |
| 187743 | 0.0622 | 31 |
| 187738 | 0.0498 | 11 |
| 187737 | 0.0403 | 8 |
| 187744 | 0.0215 | 9 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| Brodmann (1909) area 23 | UBERON:0013554 | 97.67 | gold quality |
| parietal lobe | UBERON:0001872 | 96.94 | gold quality |
| postcentral gyrus | UBERON:0002581 | 96.90 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 96.65 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 96.03 | gold quality |
| entorhinal cortex | UBERON:0002728 | 95.49 | gold quality |
| occipital lobe | UBERON:0002021 | 94.77 | gold quality |
| primary visual cortex | UBERON:0002436 | 94.48 | gold quality |
| endothelial cell | CL:0000115 | 94.39 | gold quality |
| cranial nerve II | UBERON:0000941 | 92.70 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 92.64 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 92.58 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 92.40 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 90.02 | gold quality |
| frontal cortex | UBERON:0001870 | 89.46 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 89.20 | gold quality |
| prefrontal cortex | UBERON:0000451 | 88.98 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 88.96 | gold quality |
| neocortex | UBERON:0001950 | 88.30 | gold quality |
| frontal pole | UBERON:0002795 | 88.28 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 88.22 | gold quality |
| cerebral cortex | UBERON:0000956 | 88.04 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 86.97 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 86.60 | gold quality |
| right frontal lobe | UBERON:0002810 | 86.44 | gold quality |
| telencephalon | UBERON:0001893 | 86.15 | gold quality |
| temporal lobe | UBERON:0001871 | 86.04 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 85.92 | gold quality |
| ventral tegmental area | UBERON:0002691 | 85.35 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 84.74 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-137537 | yes | 906.02 |
| E-MTAB-9388 | yes | 159.18 |
| E-ANND-3 | yes | 7.89 |
| E-MTAB-7316 | no | 29.58 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NFATC3
miRNA regulators (miRDB)
508 targeting KCNB1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6798-5P | 100.00 | 65.77 | 699 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-432-3P | 100.00 | 67.86 | 705 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- These results indicate that Kv6.3 is a novel member of the voltage-gated K(+) channel which functions as a modulatory subunit of the Kv2.1 channel. (PMID:11852086)
- characterization of Kv2.1 (PMID:12021261)
- SNAP-25 protein modulates Kv2.1 voltage-dependent K(+) channels in neuroendocrine islet beta-cells through an interaction with the channel N terminus. (PMID:12403834)
- exposed residues in the T1 domain of the N terminus, as well as the CTA domain in the C terminus, are important in determining channel activation kinetics and that these N- and C-terminal regions interact (PMID:12560340)
- direct functional interaction, which is modulated by permeant ions acting at the selectivity filter, between the outer vestibule of the Kv2.1 potassium channel and the voltage sensor. (PMID:15024041)
- There is a central role for developmentally regulated ductus arteriosus SMC O2-sensitive Kv channels in the functional closure of the DA. (PMID:15353504)
- formation of heteromeric Kv2.1/Kv9.3 channels of fixed stoichiometry consisting of three Kv2.1 subunits and one Kv9.3 subunit (PMID:15827117)
- native Kv2.1 polypeptides are more abundantly found in brain (PMID:16008572)
- Results support a model whereby an outer vestibule lysine interferes with K+ flux through the channel, and that the [K+]-dependent change in orientation of this lysine alters single channel conductance by changing the level of this interference. (PMID:16880266)
- structural analysis of the human recombinant Kv2.1 channel (PMID:18212012)
- Proteomic analysis of KV2.1 channel phosphorylation sites determining cell background specific differences in function is reported. (PMID:18690023)
- Mutation of histidine 105 in the T1 domain of the potassium channel Kv2.1 disrupts heteromerization with Kv6.3 and Kv6.4. (PMID:19074135)
- SUMOylation can exert a strong inhibitory action on the voltage-dependent K(+) channel Kv2.1 and can regulate cellular excitability in native beta-cells. (PMID:19223394)
- rs237484 is in proximity to the potassium voltage gate channel gene (KCNB1) and close to the prostaglandin I2 (prostacyclin) synthase gene (PTGIS). (PMID:19265782)
- KCNB1 may be involved in the development of LV hypertrophy in humans (PMID:19454037)
- in cells either infected with HCV or harboring an HCV subgenomic replicon, oxidative stress failed to initiate apoptosis via Kv2.1. The HCV NS5A protein mediated this effect by inhibiting oxidative stress-induced p38 MAPK phosphorylation of Kv2.1. (PMID:19717445)
- Taken together the observations indicate that, as in Shaker, the quinidine-promoted collapse of Shab G(K) occurs during deactivation of the channels, at the end of each activating pulse, with a probability of 0.1 per pulse at 80 mV. (PMID:20547671)
- Data suggest that unique roles for the clustered Kv2.1 that are independent of K(+) conductance. (PMID:20566856)
- analysis of binding sites of structurally different antiarrhythmics flecainide and propafenone in the subunit interface of potassium channel Kv2.1 (PMID:20709754)
- analysis of of kv2.1 channel diffusion observed by single molecule tracking in live cells (PMID:21095721)
- Functional interactions between residues in the S1, S4, and S5 domains of Kv2.1 in human were studied. (PMID:21455829)
- Here, we show that tyrosine phosphorylation by Src plays a fundamental role in regulating Kv2.1-mediated K(+) current enhancement. We found that the level of expression of the Kv2.1 protein is increased by Src kinase. (PMID:22106938)
- Direct interaction between syntaxin 1A and the Kv2.1 C-terminus is required for efficient insulin exocytosis and glucose-stimulated insulin secretion. (PMID:22411134)
- The results of this study that KCNB1 is a novel mechanism of toxicity in neurodegenerative disease. (PMID:22442077)
- Somatodendritic Kv2.1 channels in the motor neurons of lower spinal cord significantly decrease correlating with experimental autoimmune encephalomyelitis severity. (PMID:22560931)
- The KCNB1 rs1051295 TT genotype is associated with decreased insulin sensitivity. (PMID:23431371)
- In cerebellar granule cells, regulation of Kv2.1 by GDF15 is mediated through the TGFbetaRII-activated Akt/mTOR pathway. (PMID:24597762)
- This study identified a de novo missense mutation in KCNB1 that encodes the KV 2.1 voltage-gated potassium channel. (PMID:25164438)
- Glutamate exposure results in a loss of Kv2.1 clusters in neurons. (PMID:25908859)
- KCNB1 is a strong susceptibility gene for schizophrenia spectrum disorders in humans. (PMID:26240432)
- KCNE5 subunits may affect Kv2.1 homotetramers and Kv2.1/Kv6.4 heterotetramers in vivo, resulting in more tissue-specific fine-tuning mechanisms. (PMID:26242757)
- HO-1 expression can strongly influence apoptosis via CO-mediated regulation of Kv2.1 activity (PMID:26303499)
- The results indicate that KCNB1 is likely associated with metabolic traits that may either predispose or protect from progression to metabolic syndrome. (PMID:26377690)
- Kv2.1 functional aberrations in humans are associated with developmental delay, infantile generalized seizures, hypotonia, and behavioural problems, and also highlight a critical role for Kv2.1 in regulating neuronal firing in neuronal circuits. (PMID:26477325)
- inactivation regulation via Ca(2+)/calmodulin does not interfere with the beta subunit’s enzymatic activity as an NADPH-dependent oxidoreductase, thus rendering the Kvb1.1 subunit a multifunctional receptor (PMID:26487174)
- Epileptic V378A variant in KCNB1 changes ion selectivity, trafficking and expression of Kv2.1 channel. (PMID:26503721)
- KvS subunits modify the pharmacological response of Kv2 subunits when assembled in heterotetramers and illustrate the potential of KvS subunits to provide unique properties to the heterotetramers, as is the case for 4-AP on Kv2.1/Kv6.4 channels. (PMID:26505474)
- Perifosine modified the Kv2.1 inactivation gating resulting in a decrease of the current amplitude. (PMID:26922553)
- KCNB1 is a novel prognostic factor for gliomas that exerts its tumor suppressive function through autophagy induction. (PMID:28144039)
- the first six N-terminal residues including Lys-3, Lys-4, and Leu-5 are critical for controlling functional regulation, but not trafficking, of BK channels. This membrane-distal region has features of an amphipathic helix that is predicted to control the orientation of the first transmembrane-spanning domain (TM1) of the beta1-subunit. (PMID:28373283)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | kcnb1 | ENSDARG00000060095 |
| mus_musculus | Kcnb1 | ENSMUSG00000050556 |
| rattus_norvegicus | Kcnb1 | ENSRNOG00000046949 |
Paralogs (31): KCNG1 (ENSG00000026559), KCNQ1 (ENSG00000053918), KCNQ2 (ENSG00000075043), KCND1 (ENSG00000102057), KCNA7 (ENSG00000104848), KCNA1 (ENSG00000111262), KCNC4 (ENSG00000116396), KCNQ4 (ENSG00000117013), KCNS1 (ENSG00000124134), KCNC1 (ENSG00000129159), KCNA5 (ENSG00000130037), KCNC3 (ENSG00000131398), KCNA10 (ENSG00000143105), KCNA6 (ENSG00000151079), KCNS2 (ENSG00000156486), KCNF1 (ENSG00000162975), KCNV1 (ENSG00000164794), KCNC2 (ENSG00000166006), KCNV2 (ENSG00000168263), KCNG4 (ENSG00000168418), KCNS3 (ENSG00000170745), KCNG3 (ENSG00000171126), KCND3 (ENSG00000171385), KCNA3 (ENSG00000177272), KCNA2 (ENSG00000177301), KCNG2 (ENSG00000178342), KCNA4 (ENSG00000182255), KCNB2 (ENSG00000182674), KCNQ3 (ENSG00000184156), KCND2 (ENSG00000184408), KCNQ5 (ENSG00000185760)
Protein
Protein identifiers
Potassium voltage-gated channel subfamily B member 1 — Q14721 (reviewed: Q14721)
Alternative names: Delayed rectifier potassium channel 1, Voltage-gated potassium channel subunit Kv2.1
All UniProt accessions (3): Q14721, A0A1B0GTM8, A0A1B0GU02
UniProt curated annotations — full annotation on UniProt →
Function. Voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes, primarily in the brain, but also in the pancreas and cardiovascular system. Contributes to the regulation of the action potential (AP) repolarization, duration and frequency of repetitive AP firing in neurons, muscle cells and endocrine cells and plays a role in homeostatic attenuation of electrical excitability throughout the brain. Plays also a role in the regulation of exocytosis independently of its electrical function. Forms tetrameric potassium-selective channels through which potassium ions pass in accordance with their electrochemical gradient. The channel alternates between opened and closed conformations in response to the voltage difference across the membrane. Homotetrameric channels mediate a delayed-rectifier voltage-dependent outward potassium current that display rapid activation and slow inactivation in response to membrane depolarization. Can form functional homotetrameric and heterotetrameric channels that contain variable proportions of KCNB2; channel properties depend on the type of alpha subunits that are part of the channel. Can also form functional heterotetrameric channels with other alpha subunits that are non-conducting when expressed alone, such as KCNF1, KCNG1, KCNG3, KCNG4, KCNH1, KCNH2, KCNS1, KCNS2, KCNS3 and KCNV1, creating a functionally diverse range of channel complexes. Heterotetrameric channel activity formed with KCNS3 show increased current amplitude with the threshold for action potential activation shifted towards more negative values in hypoxic-treated pulmonary artery smooth muscle cells. Channel properties are also modulated by cytoplasmic ancillary beta subunits such as AMIGO1, KCNE1, KCNE2 and KCNE3, slowing activation and inactivation rate of the delayed rectifier potassium channels. In vivo, membranes probably contain a mixture of heteromeric potassium channel complexes, making it difficult to assign currents observed in intact tissues to any particular potassium channel family member. Major contributor to the slowly inactivating delayed-rectifier voltage-gated potassium current in neurons of the central nervous system, sympathetic ganglion neurons, neuroendocrine cells, pancreatic beta cells, cardiomyocytes and smooth muscle cells. Mediates the major part of the somatodendritic delayed-rectifier potassium current in hippocampal and cortical pyramidal neurons and sympathetic superior cervical ganglion (CGC) neurons that acts to slow down periods of firing, especially during high frequency stimulation. Plays a role in the induction of long-term potentiation (LTP) of neuron excitability in the CA3 layer of the hippocampus. Contributes to the regulation of glucose-induced action potential amplitude and duration in pancreatic beta cells, hence limiting calcium influx and insulin secretion. Plays a role in the regulation of resting membrane potential and contraction in hypoxia-treated pulmonary artery smooth muscle cells. May contribute to the regulation of the duration of both the action potential of cardiomyocytes and the heart ventricular repolarization QT interval. Contributes to the pronounced pro-apoptotic potassium current surge during neuronal apoptotic cell death in response to oxidative injury. May confer neuroprotection in response to hypoxia/ischemic insults by suppressing pyramidal neurons hyperexcitability in hippocampal and cortical regions. Promotes trafficking of KCNG3, KCNH1 and KCNH2 to the cell surface membrane, presumably by forming heterotetrameric channels with these subunits. Plays a role in the calcium-dependent recruitment and release of fusion-competent vesicles from the soma of neurons, neuroendocrine and glucose-induced pancreatic beta cells by binding key components of the fusion machinery in a pore-independent manner.
Subunit / interactions. Homotetramer or heterotetramer with KCNB2. Heterotetramer with non-conducting channel-forming alpha subunits such as KCNF1, KCNG1, KCNG3, KCNG4, KCNH1, KCNH2, KCNS1, KCNS2, KCNS3 and KCNV1. Channel activity is regulated by association with ancillary beta subunits such as AMIGO1, KCNE1, KCNE2 and KCNE3. Interacts with KCNV2. Self-associates (via N-terminus and C-terminus); self-association is required to regulate trafficking, gating and C-terminal phosphorylation-dependent modulation of the channel. Interacts (via C-terminus) with STX1A (via C-terminus); this decreases the rate of channel activation and increases the rate of channel inactivation in pancreatic beta cells, also induces neuronal apoptosis in response to oxidative injury as well as pore-independent enhancement of exocytosis in neuroendocrine cells, chromaffin cells, pancreatic beta cells and from the soma of dorsal root ganglia (DRG) neurons. Interacts (via N-terminus) with SNAP25; this decreases the rate of channel inactivation in pancreatic beta cells and also increases interaction during neuronal apoptosis in a N-methyl-D-aspartate receptor (NMDAR)-dependent manner. Interacts (via N-terminus and C-terminus) with VAMP2 (via N-terminus); stimulates channel inactivation rate. Interacts with CREB1; this promotes channel acetylation in response to stimulation of incretin hormones. Interacts (via N-terminus and C-terminus) with MYL12B. Interacts (via N-terminus) with PIAS3; this increases the number of functional channels at the cell surface. Interacts with SUMO1. Interacts (via phosphorylated form) with PTPRE; this reduces phosphorylation and channel activity in heterologous cells. Interacts (via phosphorylated FFAT motif) with VAPA and VAPB.
Subcellular location. Cell membrane. Perikaryon. Cell projection. Axon. Dendrite. Membrane. Postsynaptic cell membrane. Synapse. Synaptosome. Lateral cell membrane. Sarcolemma.
Tissue specificity. Expressed in neocortical pyramidal cells. Expressed in pancreatic beta cells (at protein level). Expressed in brain, heart, lung, liver, colon, kidney and adrenal gland. Expressed in the cortex, amygdala, cerebellum, pons, thalamus, hypothalamus, hippocampus and substantia nigra.
Post-translational modifications. Phosphorylated. Differential C-terminal phosphorylation on a subset of serines allows graded activity-dependent regulation of channel gating in hippocampal neurons. Ser-607 and Tyr-128 are significant sites of voltage-gated regulation through phosphorylation/dephosphorylation activities. Tyr-128 can be phosphorylated by Src and dephosphorylated by cytoplasmic form of the phosphatase PTPRE. CDK5-induced Ser-607 phosphorylation increases in response to acute blockade of neuronal activity. Phosphorylated on Tyr-128 by Src and on Ser-805 by MAPK14/P38MAPK; phosphorylations are necessary and sufficient for an increase in plasma membrane insertion, apoptotic potassium current surge and completion of the neuronal cell death program. Phosphorylated on Ser-520, Ser-607, Ser-656 and Ser-805 by CDK5; phosphorylation is necessary for KCNB1 channel clustering formation. The Ser-607 phosphorylation state differs between KCNB1-containing clusters on the proximal and distal portions of the axon initial segment (AIS). Highly phosphorylated on serine residues in the C-terminal cytoplasmic tail in resting neurons. Phosphorylated in pancreatic beta cells in response to incretin hormones stimulation in a PKA- and RPS6KA5/MSK1-dependent signaling pathway, promoting beta cell survival. Phosphorylation on Ser-567 is reduced during postnatal development with low levels at P2 and P5; levels then increase to reach adult levels by P14. Phosphorylation on Ser-457, Ser-541, Ser-567, Ser-607, Ser-656 and Ser-720 as well as the N-terminal Ser-15 are sensitive to calcineurin-mediated dephosphorylation contributing to the modulation of the voltage-dependent gating properties. Dephosphorylation by phosphatase PTPRE confers neuroprotection by its inhibitory influence on the neuronal apoptotic potassium current surge in a Zn(2+)-dependent manner. Dephosphorylated at Ser-607 by protein phosphatase PPP1CA. Hypoxia-, seizure- or glutamate-induced neuronal activity promote calcium/calcineurin-dependent dephosphorylation resulting in a loss of KCNB1-containing clustering and enhanced channel activity. In response to brain ischemia, Ser-567 and Ser-607 are strongly dephosphorylated while Ser-457 and Ser-720 are less dephosphorylated. In response to brain seizures, phosphorylation levels on Ser-567 and Ser-607 are greatly reduced. Phosphorylated/dephosphorylated by Src or FYN tyrosine-protein kinases and tyrosine phosphatase PTPRE in primary Schwann cells and sciatic nerve tissue. Phosphorylation at Ser-593 of the FFAT motif activates interaction with MOSPD2, VAPA and VAPB. Acetylated. Acetylation occurs in pancreatic beta cells in response to stimulation by incretin hormones in a histone acetyltransferase (HAT)/histone deacetylase (HDAC)-dependent signaling pathway, promoting beta cell survival. Sumoylated on Lys-474, preferentially with SUMO1; sumoylation induces a positive shift in the voltage-dependence of activation and inhibits channel activity. Sumoylation increases the frequency of repetitive action potential firing at the cell surface of hippocampal neurons and decreases its frequency in pancreatic beta cells. Desumoylated by SENP1.
Disease relevance. Developmental and epileptic encephalopathy 26 (DEE26) [MIM:616056] A form of epileptic encephalopathy, a heterogeneous group of severe early-onset epilepsies characterized by refractory seizures, neurodevelopmental impairment, and poor prognosis. Development is normal prior to seizure onset, after which cognitive and motor delays become apparent. DEE26 patients manifest multiple types of seizures, delayed psychomotor development, poor or absent speech, hypotonia, hypsarrhythmia. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Inhibited by 12.7 nM stromatoxin 1 (ScTx1), a spider venom toxin of the tarantula S.calceata. Inhibited by 42 nM hanatoxin 1 (HaTx1), a spider venom toxin of the tarantula G.spatulata. Modestly sensitive to millimolar levels of tetraethylammonium (TEA). Modestly sensitive to millimolar levels of 4-aminopyridine (4-AP). Completely insensitive to toxins such as dendrotoxin (DTX) and charybdotoxin (CTX).
Domain organisation. The transmembrane segment S4 functions as a voltage-sensor and is characterized by a series of positively charged amino acids at every third position. Channel opening and closing is effected by a conformation change that affects the position and orientation of the voltage-sensor paddle formed by S3 and S4 within the membrane. A transmembrane electric field that is positive inside would push the positively charged S4 segment outwards, thereby opening the pore, while a field that is negative inside would pull the S4 segment inwards and close the pore. Changes in the position and orientation of S4 are then transmitted to the activation gate formed by the inner helix bundle via the S4-S5 linker region. The N-terminal and C-terminal cytoplasmic regions mediate homooligomerization; self-association is required to regulate trafficking, gating and C-terminal phosphorylation-dependent modulation of the channel. The N-terminal cytoplasmic region is important for interaction with other channel-forming alpha subunits and with ancillary beta subunits. The C-terminus is necessary and sufficient for the restricted localization to, and clustering within, both in soma and proximal portions of dendrite of neurons and in lateral membrane of non-neuronal polarized cells. The C-terminus is both necessary and sufficient as a mediator of cholinergic and calcium-stimulated modulation of channel cell membrane clustering localization and activity in hippocampal neurons. The FFAT motif is involved in the interaction with VAPA and VAPB and its phosphorylation regulates these interactions.
Similarity. Belongs to the potassium channel family. B (Shab) (TC 1.A.1.2) subfamily. Kv2.1/KCNB1 sub-subfamily.
RefSeq proteins (1): NP_004966* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000210 | BTB/POZ_dom | Domain |
| IPR003131 | T1-type_BTB | Domain |
| IPR003968 | K_chnl_volt-dep_Kv | Family |
| IPR003973 | K_chnl_volt-dep_Kv2 | Family |
| IPR004350 | K_chnl_volt-dep_Kv2.1 | Family |
| IPR005821 | Ion_trans_dom | Domain |
| IPR011333 | SKP1/BTB/POZ_sf | Homologous_superfamily |
| IPR027359 | Volt_channel_dom_sf | Homologous_superfamily |
| IPR028325 | VG_K_chnl | Family |
Pfam: PF00520, PF02214, PF03521
Catalyzed reactions (Rhea), 1 shown:
- K(+)(in) = K(+)(out) (RHEA:29463)
UniProt features (95 total): sequence variant 28, modified residue 19, topological domain 8, region of interest 7, helix 7, transmembrane region 6, mutagenesis site 5, compositionally biased region 4, strand 4, intramembrane region 2, short sequence motif 2, chain 1, cross-link 1, turn 1
Structure
Experimental structures (PDB)
6 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7RE5 | X-RAY DIFFRACTION | 2.5 |
| 7SPD | X-RAY DIFFRACTION | 2.7 |
| 9O10 | ELECTRON MICROSCOPY | 3 |
| 9O11 | ELECTRON MICROSCOPY | 3.3 |
| 9O12 | ELECTRON MICROSCOPY | 4.3 |
| 9O13 | ELECTRON MICROSCOPY | 5.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q14721-F1 | 62.90 | 0.29 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (20): 15, 128, 444, 457, 484, 496, 503, 519, 520, 541, 567, 590, 593, 607, 656, 720, 772, 800, 805, 474
Mutagenesis-validated functional residues (5):
| Position | Phenotype |
|---|---|
| 71 | no effect on channel activity. |
| 74 | reduces interaction with kcng1 and self-interaction and impairs plasma membrane subcellular localization, homotetrameriz |
| 75 | reduces interaction with kcng1 and self-interaction and impairs plasma membrane subcellular localization, homotetrameriz |
| 79 | increases channel activity. |
| 105 | reduces channel activity. inhibits interaction with kcng4. impairs hetetrotetramerization with kcng1, kcng3 or kcng4. do |
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-1296072 | Voltage gated Potassium channels |
| R-HSA-381676 | Glucagon-like Peptide-1 (GLP1) regulates insulin secretion |
| R-HSA-112316 | Neuronal System |
| R-HSA-1296071 | Potassium Channels |
| R-HSA-1430728 | Metabolism |
| R-HSA-163685 | Integration of energy metabolism |
| R-HSA-422356 | Regulation of insulin secretion |
MSigDB gene sets: 517 (showing top):
GOBP_POTASSIUM_ION_TRANSPORT, RNGTGGGC_UNKNOWN, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_POSITIVE_REGULATION_OF_CALCIUM_ION_DEPENDENT_EXOCYTOSIS, REACTOME_VOLTAGE_GATED_POTASSIUM_CHANNELS, GOBP_RESPONSE_TO_ACID_CHEMICAL, REACTOME_POTASSIUM_CHANNELS, GOBP_NEURON_MATURATION, GOBP_INSULIN_SECRETION, GOBP_CELLULAR_RESPONSE_TO_CARBOHYDRATE_STIMULUS, GOBP_PROTEIN_TARGETING, GOBP_REGULATION_OF_EXOCYTOSIS, GOBP_REGULATION_OF_HORMONE_LEVELS, GOCC_CELL_SURFACE, GOBP_NEGATIVE_REGULATION_OF_PEPTIDE_SECRETION
GO Biological Process (27): action potential (GO:0001508), obsolete vesicle docking involved in exocytosis (GO:0006904), glutamate receptor signaling pathway (GO:0007215), positive regulation of norepinephrine secretion (GO:0010701), cellular response to nutrient levels (GO:0031669), positive regulation of catecholamine secretion (GO:0033605), glucose homeostasis (GO:0042593), clustering of voltage-gated potassium channels (GO:0045163), positive regulation of calcium ion-dependent exocytosis (GO:0045956), negative regulation of insulin secretion (GO:0046676), response to axon injury (GO:0048678), protein homooligomerization (GO:0051260), cellular response to calcium ion (GO:0071277), cellular response to glucose stimulus (GO:0071333), potassium ion transmembrane transport (GO:0071805), protein localization to plasma membrane (GO:0072659), positive regulation of protein targeting to membrane (GO:0090314), potassium ion export across plasma membrane (GO:0097623), regulation of action potential (GO:0098900), positive regulation of long-term synaptic depression (GO:1900454), response to L-glutamate (GO:1902065), regulation of motor neuron apoptotic process (GO:2000671), monoatomic ion transport (GO:0006811), potassium ion transport (GO:0006813), exocytosis (GO:0006887), monoatomic ion transmembrane transport (GO:0034220), transmembrane transport (GO:0055085)
GO Molecular Function (10): SNARE binding (GO:0000149), voltage-gated potassium channel activity (GO:0005249), delayed rectifier potassium channel activity (GO:0005251), outward rectifier potassium channel activity (GO:0015271), potassium channel regulator activity (GO:0015459), transmembrane transporter binding (GO:0044325), protein heterodimerization activity (GO:0046982), monoatomic ion channel activity (GO:0005216), potassium channel activity (GO:0005267), protein binding (GO:0005515)
GO Cellular Component (22): plasma membrane (GO:0005886), voltage-gated potassium channel complex (GO:0008076), cell surface (GO:0009986), apical plasma membrane (GO:0016324), lateral plasma membrane (GO:0016328), axon (GO:0030424), dendrite (GO:0030425), dendrite membrane (GO:0032590), neuronal cell body membrane (GO:0032809), sarcolemma (GO:0042383), perikaryon (GO:0043204), postsynaptic membrane (GO:0045211), perinuclear region of cytoplasm (GO:0048471), cholinergic synapse (GO:0098981), postsynaptic specialization membrane (GO:0099634), proximal dendrite (GO:1990635), membrane (GO:0016020), monoatomic ion channel complex (GO:0034702), cell projection (GO:0042995), neuron projection (GO:0043005), neuronal cell body (GO:0043025), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Potassium Channels | 1 |
| Regulation of insulin secretion | 1 |
| Neuronal System | 1 |
| Metabolism | 1 |
| Integration of energy metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| regulation of membrane potential | 2 |
| protein binding | 2 |
| potassium channel activity | 2 |
| voltage-gated potassium channel activity | 2 |
| plasma membrane | 2 |
| neuron projection | 2 |
| dendrite | 2 |
| neuronal cell body | 2 |
| synaptic membrane | 2 |
| cell surface receptor signaling pathway | 1 |
| glutamate receptor activity | 1 |
| regulation of norepinephrine secretion | 1 |
| positive regulation of catecholamine secretion | 1 |
| norepinephrine secretion | 1 |
| response to nutrient levels | 1 |
| cellular response to stimulus | 1 |
| catecholamine secretion | 1 |
| regulation of catecholamine secretion | 1 |
| positive regulation of amine transport | 1 |
| positive regulation of secretion by cell | 1 |
| carbohydrate homeostasis | 1 |
| neuronal ion channel clustering | 1 |
| calcium-ion regulated exocytosis | 1 |
| regulation of calcium ion-dependent exocytosis | 1 |
| positive regulation of regulated secretory pathway | 1 |
| insulin secretion | 1 |
| negative regulation of protein secretion | 1 |
| regulation of insulin secretion | 1 |
| negative regulation of peptide hormone secretion | 1 |
| response to wounding | 1 |
| protein complex oligomerization | 1 |
| response to calcium ion | 1 |
| cellular response to metal ion | 1 |
| intracellular glucose homeostasis | 1 |
| response to glucose | 1 |
| cellular response to hexose stimulus | 1 |
| potassium ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| protein localization to membrane | 1 |
Protein interactions and networks
STRING
2710 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KCNB1 | STX1A | Q16623 | 962 |
| KCNB1 | KCNS3 | Q9BQ31 | 950 |
| KCNB1 | KCNA2 | P16389 | 903 |
| KCNB1 | KCNG4 | Q8TDN1 | 860 |
| KCNB1 | VAPA | Q9P0L0 | 847 |
| KCNB1 | VAPB | O95292 | 713 |
| KCNB1 | KCNH2 | Q12809 | 683 |
| KCNB1 | SNAP25 | P13795 | 673 |
| KCNB1 | SLC6A3 | Q01959 | 670 |
| KCNB1 | KCNE2 | Q9Y6J6 | 669 |
| KCNB1 | KCNAB1 | Q14722 | 664 |
| KCNB1 | KCNF1 | Q9H3M0 | 627 |
| KCNB1 | SCN8A | Q9UQD0 | 627 |
| KCNB1 | KCNS1 | Q96KK3 | 615 |
| KCNB1 | VAMP2 | P19065 | 613 |
IntAct
114 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| KCNB1 | ARHGEF11 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | DLG3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | PICK1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| TAX1BP3 | KCNB1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | DLG4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| PTPN3 | KCNB1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | DLG5 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | TIAM2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | DLG1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | RAPGEF6 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | APBA3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | MPP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | HTRA4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | PDZRN4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIP2 | KCNB1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | PDZK1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | LIN7C | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | SNX27 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | LDB3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | MAGI3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | PTPN13 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | LNX1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | SNTG2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | WHRN | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNB1 | MPP7 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (53): CALM1 (Reconstituted Complex), KCNB1 (FRET), KCNB1 (FRET), KCNB1 (Reconstituted Complex), STX1A (Reconstituted Complex), VAPA (FRET), VAPB (FRET), KCNB1 (Affinity Capture-Western), KCNB1 (Reconstituted Complex), KCNB1 (Two-hybrid), KCNG3 (Two-hybrid), KCNH1 (Two-hybrid), KCNV2 (Two-hybrid), KCNG3 (Affinity Capture-Western), KCNH1 (Affinity Capture-Western)
ESM2 similar proteins: A0JPH4, A1DWM3, A4QN56, A6H8H5, B0UYT5, B3MG58, B3NSE1, B4GAP7, B4KR05, B4LPX5, B4QBN2, O18868, O60741, P08911, P11483, P15387, P20309, P41984, P59995, Q03717, Q0P5V9, Q14721, Q1LUC3, Q1LUQ4, Q291H8, Q4V887, Q4ZHA6, Q5BKX6, Q5VW38, Q62897, Q63099, Q63881, Q6ZSS7, Q8C145, Q8CBH5, Q8HYZ1, Q91WD0, Q92953, Q95167, Q95L11
Diamond homologs: A2BDX4, A4K2M4, A4K2N8, A4K2P6, A4K2Q6, A4K2R3, A4K2S2, A4K2T1, A4K2V2, A4K2W6, A4K2X4, A4K2Y2, A6H8H5, D4AD53, D4ADX7, G5EFC3, O18868, O35173, O35174, O73606, O88758, O88759, P10499, P15384, P15385, P15387, P15388, P16388, P16390, P17970, P17971, P17972, P22001, P22459, P22739, P25122, P48547, P59053, P59994, P59995
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PTPRA | down-regulates | KCNB1 | dephosphorylation |
| SRC | up-regulates | KCNB1 | phosphorylation |
| PTPRE | “down-regulates activity” | KCNB1 | dephosphorylation |
| KCNB1 | “up-regulates quantity” | VAPB | relocalization |
| KCNB1 | “up-regulates quantity” | VAPA | relocalization |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 76 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Assembly and cell surface presentation of NMDA receptors | 8 | 41.4× | 2e-09 |
| Neurexins and neuroligins | 8 | 32.1× | 1e-08 |
| Protein-protein interactions at synapses | 5 | 27.1× | 5e-05 |
| RHOB GTPase cycle | 5 | 15.8× | 3e-04 |
| RHOC GTPase cycle | 5 | 14.9× | 3e-04 |
| RHOA GTPase cycle | 6 | 9.1× | 6e-04 |
| RAC1 GTPase cycle | 5 | 6.2× | 8e-03 |
| RHO GTPase cycle | 5 | 6.1× | 8e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| establishment or maintenance of epithelial cell apical/basal polarity | 10 | 80.7× | 9e-15 |
| receptor clustering | 6 | 52.0× | 2e-07 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 6 | 41.3× | 7e-07 |
| protein-containing complex assembly | 8 | 12.7× | 2e-05 |
| cell-cell adhesion | 8 | 11.3× | 4e-05 |
| chemical synaptic transmission | 6 | 6.4× | 9e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
870 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 45 |
| Likely pathogenic | 53 |
| Uncertain significance | 316 |
| Likely benign | 285 |
| Benign | 67 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1031489 | NM_004975.4(KCNB1):c.1136G>T (p.Gly379Val) | Pathogenic |
| 1052355 | NM_004975.4(KCNB1):c.1249T>C (p.Ser417Pro) | Pathogenic |
| 1068345 | NM_004975.4(KCNB1):c.961G>A (p.Gly321Ser) | Pathogenic |
| 1184135 | NM_004975.4(KCNB1):c.1550C>A (p.Ser517Ter) | Pathogenic |
| 1198561 | NM_004975.4(KCNB1):c.1055_1066del (p.Ala352_Asp355del) | Pathogenic |
| 1334708 | NM_004975.4(KCNB1):c.1503dup (p.Lys502Ter) | Pathogenic |
| 1427157 | NM_004975.4(KCNB1):c.1107G>A (p.Trp369Ter) | Pathogenic |
| 1428239 | NM_004975.4(KCNB1):c.1229C>T (p.Pro410Leu) | Pathogenic |
| 1446788 | NM_004975.4(KCNB1):c.959T>C (p.Leu320Pro) | Pathogenic |
| 1452081 | NM_004975.4(KCNB1):c.1169G>A (p.Gly390Glu) | Pathogenic |
| 1457665 | NM_004975.4(KCNB1):c.629C>A (p.Thr210Lys) | Pathogenic |
| 156533 | NM_004975.4(KCNB1):c.1041C>A (p.Ser347Arg) | Pathogenic |
| 156534 | NM_004975.4(KCNB1):c.1121C>T (p.Thr374Ile) | Pathogenic |
| 156535 | NM_004975.4(KCNB1):c.1135G>A (p.Gly379Arg) | Pathogenic |
| 2504540 | NM_004975.4(KCNB1):c.1232T>A (p.Ile411Asn) | Pathogenic |
| 2575245 | NM_004975.4(KCNB1):c.1141G>A (p.Gly381Arg) | Pathogenic |
| 2709811 | NM_004975.4(KCNB1):c.1051T>G (p.Phe351Val) | Pathogenic |
| 280403 | NM_004975.4(KCNB1):c.820dup (p.Tyr274fs) | Pathogenic |
| 280560 | NM_004975.4(KCNB1):c.1108T>C (p.Trp370Arg) | Pathogenic |
| 2811308 | NM_004975.4(KCNB1):c.988G>C (p.Glu330Gln) | Pathogenic |
| 3062072 | NM_004975.4(KCNB1):c.682C>T (p.Gln228Ter) | Pathogenic |
| 3897492 | NM_004975.4(KCNB1):c.1124T>C (p.Met375Thr) | Pathogenic |
| 449693 | NM_004975.4(KCNB1):c.916C>T (p.Arg306Cys) | Pathogenic |
| 451018 | NM_004975.4(KCNB1):c.1144G>C (p.Asp382His) | Pathogenic |
| 4537900 | NM_004975.4(KCNB1):c.1223C>T (p.Pro408Leu) | Pathogenic |
| 4813524 | NM_004975.4(KCNB1):c.975GAG[1] (p.Arg326del) | Pathogenic |
| 503951 | NM_004975.4(KCNB1):c.661delinsAT (p.Gly221fs) | Pathogenic |
| 503975 | NM_004975.4(KCNB1):c.1314_1315del (p.Arg438fs) | Pathogenic |
| 633620 | NM_004975.4(KCNB1):c.629C>G (p.Thr210Arg) | Pathogenic |
| 633621 | NM_004975.4(KCNB1):c.857del (p.Val286fs) | Pathogenic |
SpliceAI
481 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:49374989:GGATC:G | acceptor_loss | 1.0000 |
| 20:49374990:GATC:G | acceptor_loss | 1.0000 |
| 20:49374991:ATCTG:A | acceptor_loss | 1.0000 |
| 20:49374992:TCTG:T | acceptor_loss | 1.0000 |
| 20:49374993:C:CC | acceptor_gain | 1.0000 |
| 20:49374993:C:CG | acceptor_loss | 1.0000 |
| 20:49374994:T:G | acceptor_loss | 1.0000 |
| 20:49481909:CTCA:C | donor_loss | 1.0000 |
| 20:49481910:TCA:T | donor_loss | 1.0000 |
| 20:49481911:CA:C | donor_loss | 1.0000 |
| 20:49481912:A:AC | donor_gain | 1.0000 |
| 20:49481913:C:CC | donor_gain | 1.0000 |
| 20:49481913:C:CG | donor_loss | 1.0000 |
| 20:49374988:AGGAT:A | acceptor_gain | 0.9900 |
| 20:49374989:GGAT:G | acceptor_gain | 0.9900 |
| 20:49374990:GAT:G | acceptor_gain | 0.9900 |
| 20:49374991:AT:A | acceptor_gain | 0.9900 |
| 20:49374995:G:C | acceptor_gain | 0.9900 |
| 20:49481912:AC:A | donor_gain | 0.9900 |
| 20:49481913:CC:C | donor_gain | 0.9900 |
| 20:49481913:CCT:C | donor_gain | 0.9900 |
| 20:49481913:CCTT:C | donor_gain | 0.9800 |
| 20:49481913:CCTTG:C | donor_gain | 0.9800 |
| 20:49374995:G:GC | acceptor_gain | 0.9500 |
| 20:49432661:T:A | donor_gain | 0.9400 |
| 20:49432662:C:CA | donor_gain | 0.9300 |
| 20:49476360:A:AC | donor_gain | 0.9100 |
| 20:49476361:C:CC | donor_gain | 0.9100 |
| 20:49368955:G:C | donor_gain | 0.8800 |
| 20:49368957:G:T | donor_gain | 0.8600 |
AlphaMissense
5708 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:49374257:C:G | A435P | 1.000 |
| 20:49374262:C:G | R433P | 1.000 |
| 20:49374265:C:G | R432P | 1.000 |
| 20:49374275:C:G | A429P | 1.000 |
| 20:49374292:T:G | Q423P | 1.000 |
| 20:49374303:G:C | F419L | 1.000 |
| 20:49374303:G:T | F419L | 1.000 |
| 20:49374305:A:G | F419L | 1.000 |
| 20:49374311:A:G | S417P | 1.000 |
| 20:49374312:G:C | F416L | 1.000 |
| 20:49374312:G:T | F416L | 1.000 |
| 20:49374313:A:C | F416C | 1.000 |
| 20:49374313:A:G | F416S | 1.000 |
| 20:49374314:A:G | F416L | 1.000 |
| 20:49374314:A:T | F416I | 1.000 |
| 20:49374322:A:T | V413D | 1.000 |
| 20:49374325:A:C | I412S | 1.000 |
| 20:49374325:A:T | I412N | 1.000 |
| 20:49374331:G:C | P410R | 1.000 |
| 20:49374334:A:T | I409N | 1.000 |
| 20:49374337:G:C | P408R | 1.000 |
| 20:49374337:G:T | P408H | 1.000 |
| 20:49374338:G:A | P408S | 1.000 |
| 20:49374340:A:C | L407R | 1.000 |
| 20:49374340:A:G | L407P | 1.000 |
| 20:49374340:A:T | L407H | 1.000 |
| 20:49374343:G:T | A406D | 1.000 |
| 20:49374344:C:G | A406P | 1.000 |
| 20:49374352:A:C | L403R | 1.000 |
| 20:49374352:A:G | L403P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000011792 (20:49451182 A>G), RS1000028512 (20:49444211 C>T), RS1000051235 (20:49437553 G>A), RS1000092880 (20:49416928 G>T), RS1000094471 (20:49423119 A>T), RS1000121298 (20:49462346 C>T), RS1000126970 (20:49397887 C>T), RS1000151954 (20:49376307 G>A), RS1000153875 (20:49462604 T>C), RS1000167357 (20:49457568 T>G), RS1000168090 (20:49385137 A>C), RS1000183460 (20:49381699 C>T), RS1000184928 (20:49414610 G>A), RS1000214437 (20:49381467 C>A), RS1000215113 (20:49420410 C>A,T)
Disease associations
OMIM: gene MIM:600397 | disease phenotypes: MIM:616056
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| developmental and epileptic encephalopathy, 26 | Definitive | Autosomal dominant |
| complex neurodevelopmental disorder | Definitive | Autosomal dominant |
| undetermined early-onset epileptic encephalopathy | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| complex neurodevelopmental disorder | Definitive | AD |
Mondo (6): developmental and epileptic encephalopathy, 26 (MONDO:0014477), intellectual disability (MONDO:0001071), epilepsy (MONDO:0005027), developmental and epileptic encephalopathy (MONDO:0100620), complex neurodevelopmental disorder (MONDO:0100038), undetermined early-onset epileptic encephalopathy (MONDO:0018614)
Orphanet (3): Non-specific early-onset epileptic encephalopathy (Orphanet:442835), Rare genetic intellectual disability (Orphanet:183757), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
62 total (30 of 62 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000252 | Microcephaly |
| HP:0000348 | High forehead |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000504 | Abnormality of vision |
| HP:0000508 | Ptosis |
| HP:0000546 | Retinal degeneration |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000668 | Hypodontia |
| HP:0000708 | Atypical behavior |
| HP:0000717 | Autism |
| HP:0000750 | Delayed speech and language development |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001265 | Hyporeflexia |
| HP:0001268 | Mental deterioration |
| HP:0001273 | Abnormal corpus callosum morphology |
| HP:0001288 | Gait disturbance |
| HP:0001290 | Generalized hypotonia |
| HP:0001298 | Encephalopathy |
| HP:0001315 | Reduced tendon reflexes |
| HP:0001336 | Myoclonus |
| HP:0001337 | Tremor |
| HP:0001344 | Absent speech |
| HP:0001508 | Failure to thrive |
GWAS associations
11 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_772 | Obesity-related traits | 8.000000e-06 |
| GCST002539_93 | Schizophrenia | 5.000000e-08 |
| GCST003013_14 | White matter hyperintensity burden | 6.000000e-06 |
| GCST003013_30 | White matter hyperintensity burden | 1.000000e-06 |
| GCST004250_17 | Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL) | 2.000000e-06 |
| GCST006627_77 | Diastolic blood pressure | 4.000000e-09 |
| GCST006803_52 | Schizophrenia | 1.000000e-07 |
| GCST008163_309 | Height | 4.000000e-12 |
| GCST008163_601 | Height | 8.000000e-06 |
| GCST009600_40 | Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy) | 3.000000e-09 |
| GCST012465_28 | Bipolar disorder | 4.000000e-09 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005109 | energy expenditure |
| EFO:0005665 | white matter hyperintensity measurement |
| EFO:0007965 | response to combination chemotherapy |
| EFO:0006336 | diastolic blood pressure |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D004827 | Epilepsy | C10.228.140.490 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2362996 (PROTEIN FAMILY), CHEMBL2363000 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: vgic — Voltage-gated potassium channels (Kv)
Most potent curated ligand interactions (17 total), top 17:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| ScTx1 | Gating inhibitor | 7.9 | pIC50 |
| SsmTx-1 | Pore blocker | 7.4 | pIC50 |
| HaTx1 | Gating inhibitor | 7.38 | pKd |
| RY796 | Gating inhibitor | 6.6 | pIC50 |
| jingzhaotoxin-III | Gating inhibitor | 6.4 | pIC50 |
| jingzhaotoxin-XI | Gating inhibitor | 6.1 | pKd |
| 3-bicyclo[2.2.1]hept-2-yl-benzene-1,2-diol | Channel blocker | 6.0 | pIC50 |
| RY785 | Gating inhibitor | 5.89 | pIC50 |
| DABCO-C16 | Channel blocker | 5.7 | pIC50 |
| SGTx1 | Gating inhibitor | 5.7 | pKd |
| linoleic acid | Activator | 5.6 | pEC50 |
| halothane | Channel blocker | 3.5 | pEC50 |
| fampridine | Pore blocker | 3.3 | pIC50 |
| tetraethylammonium | Pore blocker | 2.0 | pIC50 |
| GxTx-1E | Gating inhibitor | 2.0 | pIC50 |
| Na+ | Pore blocker | 1.6 | pIC50 |
| Ba2+ | Channel blocker | 1.5 | pKd |
ChEMBL bioactivities
28 potent at pChembl≥5 of 28 total, top 28 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.82 | Ki | 0.15 | nM | CHEMBL5722941 |
| 9.74 | IC50 | 0.18 | nM | CHEMBL5722941 |
| 7.30 | IC50 | 50 | nM | CHEMBL5574868 |
| 7.16 | IC50 | 70 | nM | CHEMBL5573337 |
| 7.10 | IC50 | 80 | nM | CHEMBL5566791 |
| 6.60 | IC50 | 250 | nM | CHEMBL5549888 |
| 6.52 | IC50 | 300 | nM | CHEMBL5570192 |
| 6.50 | IC50 | 320 | nM | CHEMBL5574133 |
| 6.50 | IC50 | 320 | nM | CHEMBL5570536 |
| 6.47 | IC50 | 337 | nM | CHEMBL5570619 |
| 6.43 | IC50 | 370 | nM | CHEMBL5569315 |
| 6.41 | IC50 | 390 | nM | CHEMBL5590036 |
| 6.37 | IC50 | 430 | nM | CHEMBL5574578 |
| 6.37 | IC50 | 430 | nM | CHEMBL5570316 |
| 6.32 | IC50 | 480 | nM | CHEMBL5565837 |
| 6.28 | IC50 | 530 | nM | CHEMBL5563908 |
| 6.27 | IC50 | 540 | nM | CHEMBL5574392 |
| 6.26 | IC50 | 550 | nM | CHEMBL5571030 |
| 6.23 | IC50 | 590 | nM | CHEMBL3577208 |
| 6.23 | IC50 | 590 | nM | CHEMBL5571436 |
| 6.18 | IC50 | 660 | nM | CHEMBL5565317 |
| 6.00 | IC50 | 1000 | nM | CHEMBL3577209 |
| 6.00 | IC50 | 1000 | nM | CHEMBL5595709 |
| 5.96 | IC50 | 1100 | nM | CHEMBL5571104 |
| 5.96 | IC50 | 1100 | nM | CHEMBL5565130 |
| 5.52 | IC50 | 3000 | nM | CHEMBL5583837 |
| 5.45 | IC50 | 3550 | nM | CHEMBL5590132 |
| 5.00 | IC50 | 1e+04 | nM | CHEMBL5565384 |
PubChem BioAssay actives
28 with measured affinity, of 97 total; 27 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 3-[(1R,2aS,4S,5aS,8aS,10S,11aR,14aS,16S,17aS,19S,20aS,22S,23aS,25S,26aS,28S,29aS,31R,32aS,35aS,36R,38aS,39S,41aS,42S,44aS,45S,48R,50aS,51S,53aS,54S,56aS,57S,59aS,60S,63S,66S,69S,72S,75S,78S,87R,93S,96S,99S)-17a,20a,23a,53a,63-pentakis(4-aminobutyl)-31-[[(2S)-2-[[(2S)-6-amino-2-[[(2S)-5-carbamimidamido-2-[[(2S)-5-carbamimidamido-2-[[(2S)-1-[(2S)-5-oxopyrrolidine-2-carbonyl]pyrrolidine-2-carbonyl]amino]pentanoyl]amino]pentanoyl]amino]hexanoyl]amino]-4-methylpentanoyl]amino]-16,29a,72,78-tetrakis(2-amino-2-oxoethyl)-14a,26a-bis(3-amino-3-oxopropyl)-2a,38a,66-tribenzyl-28,50a,57-tris[(2S)-butan-2-yl]-4,5a,19,42,45,69-hexakis(3-carbamimidamidopropyl)-51,54-bis(2-carboxyethyl)-56a,99-bis(carboxymethyl)-36-[[(2S,3S)-1-(carboxymethylamino)-3-methyl-1-oxopentan-2-yl]carbamoyl]-39,60-bis[(1R)-1-hydroxyethyl]-75,93-bis(hydroxymethyl)-32a,35a,59a-tris[(4-hydroxyphenyl)methyl]-22-(1H-imidazol-4-ylmethyl)-96-(1H-indol-3-ylmethyl)-41a-methyl-25-(2-methylpropyl)-1a,3,4a,6,7a,9,10a,13a,15,16a,18,19a,21,22a,24,25a,27,28a,30,31a,34a,37a,38,40a,41,43a,44,47,49a,50,52a,53,55a,56,58a,59,61a,62,65,68,71,74,77,80,83,86,89,92,95,98-pentacontaoxo-33,34,63a,64a,67a,68a-hexathia-a,2,3a,5,6a,8,9a,12a,14,15a,17,18a,20,21a,23,24a,26,27a,29,30a,33a,36a,37,39a,40,42a,43,46,48a,49,51a,52,54a,55,57a,58,60a,61,64,67,70,73,76,79,82,85,88,91,94,97-pentacontazapentacyclo[85.74.4.448,111.010,14.0144,148]nonahexacontahectan-8a-yl]propanoic acid | 2198828: Binding affinity to KV channel (unknown origin) assessed as inhibition constant | ki | 0.0001 | uM |
| 2-ethoxy-N-[1-(6-methoxy-2-pyridinyl)ethyl]-5-(2-methylpropanoylamino)benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.0500 | uM |
| 2-ethoxy-N-[1-[3-(methylamino)phenyl]ethyl]-5-(2-methylpropanoylamino)benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.0700 | uM |
| 2-ethoxy-N-[1-(3-methylphenyl)ethyl]-5-(2-methylpropanoylamino)benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.0800 | uM |
| N-[1-[3-(difluoromethoxy)phenyl]ethyl]-2-ethoxy-5-(2-methylpropanoylamino)benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.2500 | uM |
| N-[[3-(difluoromethoxy)phenyl]methyl]-2-ethoxy-5-(2-methylpropanoylamino)benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.3000 | uM |
| N-[1-[3-(azetidin-1-yl)phenyl]ethyl]-2-ethoxy-5-(2-methylpropanoylamino)benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.3200 | uM |
| 2-ethoxy-N-[1-(6-fluoro-2-pyridinyl)ethyl]-5-(2-methylpropanoylamino)benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.3200 | uM |
| 2-ethoxy-5-(2-methylpropanoylamino)-N-[[3-(trifluoromethoxy)phenyl]methyl]benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.3370 | uM |
| 2-ethoxy-N-[1-(3-methoxyphenyl)ethyl]-5-(2-methylpropanoylamino)benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.3700 | uM |
| 2-(dimethylamino)-5-(2-methylpropanoylamino)-N-[[3-(1,3-thiazol-2-yl)phenyl]methyl]benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.3900 | uM |
| 2-ethoxy-5-(2-methylpropanoylamino)-N-[1-[3-(1,3-thiazol-2-yl)phenyl]ethyl]benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.4300 | uM |
| 2-ethoxy-N-[1-(2-methoxy-4-pyridinyl)ethyl]-5-(2-methylpropanoylamino)benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.4300 | uM |
| 2-(dimethylamino)-5-(2-methylpropanoylamino)-N-(1-phenylethyl)benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.4800 | uM |
| 2-ethoxy-5-(2-methylpropanoylamino)-N-[[3-(1,3-thiazol-2-yl)phenyl]methyl]benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.5300 | uM |
| 2-(dimethylamino)-5-(2-methylpropanoylamino)-N-(pyridin-2-ylmethyl)benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.5400 | uM |
| 5-(cyclobutanecarbonylamino)-2-ethoxy-N-[1-[3-(1,3-thiazol-2-yl)phenyl]ethyl]benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.5500 | uM |
| 2-[2-(2,6-dimethoxybenzoyl)-3-hydroxy-6-methoxy-5-methylphenyl]-3-(2,6-dimethoxyphenyl)-4-hydroxy-7-methoxy-6-methylinden-1-one | 1225481: Inhibition of Kv2.1 channel in human INS1 cells assessed as inhibition of outward K+ current by electrophysiology/patch clamp technique | ic50 | 0.5900 | uM |
| 5-(2-methylpropanoylamino)-2-propoxy-N-[1-[3-(1,3-thiazol-2-yl)phenyl]ethyl]benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.5900 | uM |
| 2-ethoxy-5-(2-methylpropanoylamino)-N-[1-(3-pyrimidin-2-ylphenyl)ethyl]benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 0.6600 | uM |
| 1,2-bis[2-(2,6-dimethoxybenzoyl)-3-hydroxy-6-methoxy-5-methylphenyl]ethanone | 1225481: Inhibition of Kv2.1 channel in human INS1 cells assessed as inhibition of outward K+ current by electrophysiology/patch clamp technique | ic50 | 1.0000 | uM |
| propan-2-yl N-[4-ethoxy-3-[1-[3-(1,3-thiazol-2-yl)phenyl]ethylcarbamoyl]phenyl]carbamate | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 1.0000 | uM |
| ethyl N-[4-ethoxy-3-[1-[3-(1,3-thiazol-2-yl)phenyl]ethylcarbamoyl]phenyl]carbamate | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 1.1000 | uM |
| 5-(cyclopropanecarbonylamino)-2-ethoxy-N-[1-[3-(1,3-thiazol-2-yl)phenyl]ethyl]benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 1.1000 | uM |
| 2-methoxy-5-(2-methylpropanoylamino)-N-[1-[3-(1,3-thiazol-2-yl)phenyl]ethyl]benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 3.0000 | uM |
| 2-(dimethylamino)-5-(2-methylpropanoylamino)-N-[(3-phenylphenyl)methyl]benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 3.5500 | uM |
| 2-ethoxy-5-(ethylsulfonylamino)-N-[1-[3-(1,3-thiazol-2-yl)phenyl]ethyl]benzamide | 2093281: Inhibition of human KV2.1 stably expressed in HEK293 cells by whole cell patch-clamp assay | ic50 | 10.0000 | uM |
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression, increases expression, increases methylation | 7 |
| Tetrachlorodibenzodioxin | decreases expression, decreases reaction, affects expression | 3 |
| Benzo(a)pyrene | decreases expression, decreases methylation, increases methylation | 2 |
| Dexamethasone | increases expression, affects cotreatment | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Tretinoin | affects cotreatment, increases expression, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| lead acetate | decreases expression | 1 |
| trichostatin A | decreases expression | 1 |
| mono-(2-ethylhexyl)phthalate | decreases expression | 1 |
| pentabromodiphenyl ether | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| licochalcone B | increases expression | 1 |
| jinfukang | increases expression, affects cotreatment | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Amphotericin B | decreases expression | 1 |
| Arsenic | affects methylation | 1 |
| Ascorbic Acid | affects cotreatment, increases expression | 1 |
| Atrazine | decreases expression | 1 |
| Vehicle Emissions | decreases expression, increases abundance | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Endosulfan | decreases expression, decreases reaction | 1 |
| Formaldehyde | decreases expression | 1 |
ChEMBL screening assays
28 unique, capped per target: 27 binding, 1 toxicity
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1787442 | Binding | Inhibition of human recombinant Kv channel at 10 uM by radioligand binding assay | Structure-activity relationships of pyrrole based S-nitrosoglutathione reductase inhibitors: pyrrole regioisomers and propionic acid replacement. — Bioorg Med Chem Lett |
| CHEMBL5522525 | Toxicity | Inhibition of human K+ channel by automated electrophysiology | Discovery of Clinical Candidate AZD5462, a Selective Oral Allosteric RXFP1 Agonist for Treatment of Heart Failure. — J Med Chem |
Cellosaurus cell lines
4 cell lines: 3 spontaneously immortalized cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A9Z5 | ZJSHi001-A | Induced pluripotent stem cell | Female |
| CVCL_C0Y3 | B’SYS CHO Kv2.1 | Spontaneously immortalized cell line | Female |
| CVCL_D1K2 | PrecisION hKv2.1-CHO | Spontaneously immortalized cell line | Female |
| CVCL_D1K3 | PrecisION hKv2.1/Kv9.2-CHO | Spontaneously immortalized cell line | Female |
Clinical trials (associated diseases)
199 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT06310681 | Not specified | COMPLETED | Pilot Testing of a Co-adapted Group Programme for Parents/Carers of Children With Complex Neurodisability |
| NCT07303049 | Not specified | NOT_YET_RECRUITING | Cognitive Benefit of Intensive Rehabilitation Using Rhythmic Music Training in Children With Complex Neurodevelopmental Disorder |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
| NCT01988623 | Not specified | COMPLETED | Pivotal Response Treatment for Individuals With Intellectual Disabilities |
| NCT02099773 | Not specified | COMPLETED | Support Staff-client Interactions With Augmentative and Alternative Communication |
| NCT02136849 | Not specified | COMPLETED | Inter-regional Project of the Great Western Exploration Approach for Exome Molecular Causes Severe Intellectual Disability Isolated or Syndromic |
| NCT02225041 | Not specified | COMPLETED | Sedation Strategy and Cognitive Outcome After Critical Illness in Early Childhood |
| NCT02414438 | Not specified | COMPLETED | Establishing the Clinical Utility of First StepDx PLUS and NextStepDx PLUS Study |
| NCT02451761 | Not specified | COMPLETED | Apparently Balanced Chromosomal Translocation/ Next-generation Sequencing/ Intellectual Disability |
| NCT02461420 | Not specified | ACTIVE_NOT_RECRUITING | Mapping the Genotype, Phenotype, and Natural History of Phelan-McDermid Syndrome |
| NCT02461459 | Not specified | ACTIVE_NOT_RECRUITING | Autism Spectrum Disorder (ASD) and Intellectual Disability (ID) Determinants in Tuberous Sclerosis Complex (TSC) |
| NCT02486081 | Not specified | COMPLETED | Development and Application-Smart Football for Movement Evaluation and Training in the Special Education Population |
| NCT02504502 | Not specified | COMPLETED | Enhancing Genomic Laboratory Reports to Enhance Communication and Empower Patients |
| NCT02513277 | Not specified | COMPLETED | Diabetes Screening & Prevention for People With Learning (Intellectual) Disabilities:STOP Diabetes Study |
| NCT02561754 | Not specified | COMPLETED | Weight Management for Adolescents With IDD |
| NCT02591446 | Not specified | COMPLETED | Transcranial Magnetic Stimulation Studies in Autism Spectrum Disorders |
| NCT02714868 | Not specified | COMPLETED | Evaluation of Project TEAM (Teens Making Environmental and Activity Modifications) |
| NCT02721394 | Not specified | UNKNOWN | FCT With Young Children With ID in the UK: A Feasibility Project V.1 |
Related Atlas pages
- Associated diseases: developmental and epileptic encephalopathy, 26, complex neurodevelopmental disorder, undetermined early-onset epileptic encephalopathy
- Targeted by drugs: Barium, Dalfampridine, Halothane
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): developmental and epileptic encephalopathy, developmental and epileptic encephalopathy, 26, undetermined early-onset epileptic encephalopathy