KCNC4-DT

Summary

KCNC4-DT (KCNC4 divergent transcript, HGNC:39958) is a long non-coding RNA gene on chromosome 1p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39958
Approved symbol	KCNC4-DT
Name	KCNC4 divergent transcript
Location	1p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224965
Ensembl biotype	lncRNA
Entrez	100873974
RNAcentral	URS000075CAFB — lncRNA, 1132 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 25 — 25 lncRNA

ENST00000455967, ENST00000733870, ENST00000733871, ENST00000733872, ENST00000733873, ENST00000733874, ENST00000733875, ENST00000733876, ENST00000733877, ENST00000733878, ENST00000733879, ENST00000733880, ENST00000733881, ENST00000733882, ENST00000733883, ENST00000733884, ENST00000733885, ENST00000733886, ENST00000733887, ENST00000733888, ENST00000733889, ENST00000733890, ENST00000733891, ENST00000733892, ENST00000733893

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000455967 — 2 exons

Exon	Start	End
ENSE00004065501	110208441	110209204
ENSE00004065525	110209611	110210121

Expression profiles

Bgee: expression breadth ubiquitous, 122 present calls, max score 66.23.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0196 / max 4.1966, expressed in 5 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
13737	0.0196	5

Top tissues by expression

122 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	66.23	silver quality
right testis	UBERON:0004534	65.47	gold quality
ganglionic eminence	UBERON:0004023	64.65	gold quality
testis	UBERON:0000473	64.55	gold quality
left testis	UBERON:0004533	64.19	gold quality
ventricular zone	UBERON:0003053	64.12	gold quality
islet of Langerhans	UBERON:0000006	62.78	gold quality
cortical plate	UBERON:0005343	62.50	gold quality
mucosa of transverse colon	UBERON:0004991	62.13	gold quality
tonsil	UBERON:0002372	61.75	gold quality
kidney	UBERON:0002113	61.02	gold quality
adult mammalian kidney	UBERON:0000082	61.01	gold quality
Ammon’s horn	UBERON:0001954	60.82	gold quality
right uterine tube	UBERON:0001302	60.63	gold quality
right lobe of thyroid gland	UBERON:0001119	59.61	gold quality
cortex of kidney	UBERON:0001225	59.20	gold quality
thyroid gland	UBERON:0002046	58.94	gold quality
left lobe of thyroid gland	UBERON:0001120	58.86	gold quality
amygdala	UBERON:0001876	58.83	gold quality
temporal lobe	UBERON:0001871	58.78	gold quality
lymph node	UBERON:0000029	58.56	gold quality
myometrium	UBERON:0001296	57.67	gold quality
spleen	UBERON:0002106	57.06	gold quality
pancreas	UBERON:0001264	56.62	gold quality
fallopian tube	UBERON:0003889	56.60	gold quality
leukocyte	CL:0000738	56.56	gold quality
gall bladder	UBERON:0002110	56.31	gold quality
right adrenal gland cortex	UBERON:0035827	56.26	gold quality
placenta	UBERON:0001987	56.08	gold quality
calcaneal tendon	UBERON:0003701	55.73	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.99

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.