KCND2
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Also known as Kv4.2RK5KIAA1044
Summary
KCND2 (potassium voltage-gated channel subfamily D member 2, HGNC:6238) is a protein-coding gene on chromosome 7q31.31, encoding A-type voltage-gated potassium channel KCND2 (Q9NZV8). Voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes, primarily in the brain.
Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ion channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to have human homolog(s). This gene encodes a member of the potassium channel, voltage-gated, shal-related subfamily, members of which form voltage-activated A-type potassium ion channels and are prominent in the repolarization phase of the action potential. This member mediates a rapidly inactivating, A-type outward potassium current which is not under the control of the N terminus as it is in Shaker channels.
Source: NCBI Gene 3751 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder (Strong, GenCC) — +2 more curated relationships
- GWAS associations: 8
- Clinical variants (ClinVar): 493 total — 3 pathogenic, 3 likely-pathogenic
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_012281
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6238 |
| Approved symbol | KCND2 |
| Name | potassium voltage-gated channel subfamily D member 2 |
| Location | 7q31.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Kv4.2, RK5, KIAA1044 |
| Ensembl gene | ENSG00000184408 |
| Ensembl biotype | protein_coding |
| OMIM | 605410 |
| Entrez | 3751 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 2 protein_coding, 1 retained_intron
ENST00000331113, ENST00000425288, ENST00000473190
RefSeq mRNA: 1 — MANE Select: NM_012281
NM_012281
CCDS: CCDS5776
Canonical transcript exons
ENST00000331113 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001295053 | 120741534 | 120741629 |
| ENSE00001300279 | 120273175 | 120275747 |
| ENSE00001312622 | 120742510 | 120742602 |
| ENSE00001316360 | 120747681 | 120750337 |
| ENSE00001325824 | 120732903 | 120733065 |
| ENSE00003468812 | 120745780 | 120746027 |
Expression profiles
Bgee: expression breadth ubiquitous, 187 present calls, max score 94.71.
FANTOM5 (CAGE): breadth broad, TPM avg 2.0730 / max 157.5708, expressed in 413 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 80749 | 0.8514 | 297 |
| 80748 | 0.6099 | 142 |
| 80752 | 0.3056 | 117 |
| 80751 | 0.1177 | 60 |
| 80750 | 0.0813 | 39 |
| 80753 | 0.0521 | 20 |
| 204670 | 0.0293 | 10 |
| 80754 | 0.0257 | 15 |
Top tissues by expression
283 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cerebellar vermis | UBERON:0004720 | 94.71 | gold quality |
| paraflocculus | UBERON:0005351 | 89.85 | gold quality |
| cerebellum | UBERON:0002037 | 89.65 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 89.23 | gold quality |
| cerebellar cortex | UBERON:0002129 | 89.19 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 88.93 | gold quality |
| pons | UBERON:0000988 | 88.39 | gold quality |
| stromal cell of endometrium | CL:0002255 | 86.80 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 86.76 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 82.91 | gold quality |
| prefrontal cortex | UBERON:0000451 | 81.68 | gold quality |
| primary visual cortex | UBERON:0002436 | 80.89 | gold quality |
| ganglionic eminence | UBERON:0004023 | 80.12 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 79.82 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 79.58 | gold quality |
| endothelial cell | CL:0000115 | 79.26 | gold quality |
| caudate nucleus | UBERON:0001873 | 78.02 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 77.61 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 77.43 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 77.40 | gold quality |
| frontal cortex | UBERON:0001870 | 77.18 | gold quality |
| occipital lobe | UBERON:0002021 | 76.84 | gold quality |
| decidua | UBERON:0002450 | 76.68 | gold quality |
| neocortex | UBERON:0001950 | 76.66 | gold quality |
| nucleus accumbens | UBERON:0001882 | 76.39 | gold quality |
| right uterine tube | UBERON:0001302 | 76.38 | gold quality |
| brain | UBERON:0000955 | 76.10 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 76.06 | gold quality |
| cerebral cortex | UBERON:0000956 | 76.03 | gold quality |
| putamen | UBERON:0001874 | 75.96 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 89.00 |
| E-HCAD-25 | yes | 24.19 |
| E-ANND-3 | no | 3.35 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): IRX3, IRX4, IRX5, ZFPM2
miRNA regulators (miRDB)
176 targeting KCND2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
Literature-anchored findings (GeneRIF, showing 40)
- PSD-95 increased the amount of Kv1.4, but not Kv4.2, in lipid rafts. (PMID:14559911)
- Kv4.2 and K+ channel-interacting protein 2 make up a complex of Ito channels (PMID:14623880)
- Data show that KChIP1, KChIP2.1, and KChIP2.2 could form homo- as well as hetero-oligomers, and that this oligomerization did not perturb their interaction with Kv4.2 potassium channel. (PMID:15358149)
- mutations in KCND2 and KCND3 are not a frequent cause of long QT syndrome (PMID:15563876)
- Data show that the Kv4.2 voltage-dependent potassium channel acts as a fast-responding steroid sensor in human granulosa cells. (PMID:15991246)
- Traffic of Kv4.2 is coat protein complex I (COPI)-dependent. (PMID:16260497)
- the C-terminal domain of Kv4.2 plays a critical role in voltage-dependent activation and functional expression that is mediated by direct interaction between the Kv4.2 C terminus and KChIP2 (PMID:16820361)
- Electrophysiological analysis indicates attenuated K+ current density in cells expressing this Kv4.2-N587fsX1 mutant channel, which is consistent with a model of aberrant neuronal excitability characteristic of TLE. (PMID:16934482)
- two Ca2+-dependent posttranslational events regulate the activity of DREAM on Kv4.2 channel function (PMID:17102134)
- Our results further suggest distinct mechanisms for Kv4.2 gating modulation by KChIPs and DPPs. (PMID:17981906)
- biophysical and biochemical methods indicate that I(SA) channels carry four subunits each of Kv4.2 and DPP6. (PMID:18364354)
- rodent and human Abeta are effective in modulating K currents (PMID:18463498)
- An ALA-scanning mutagenesis in the S4-S5 linker region, the initial part of S5, and the distal part of S6, in X. laevis oocytes showed that temporary uncoupling at the interface between V sensor and cytoplasmic gate may underlie closed-state inactivation. (PMID:19171772)
- SAP97 is a major partner for surface expression and CaMKII-dependent regulation of cardiac Kv4.2 and kv4.3 channels. (PMID:19213956)
- the inhibition of maximal amplitude of Kv4.2 channels by arachidonic acid can explain the inhibition of somatodendritic I(A) in hippocampal neurons (PMID:19453640)
- This study indicated that Kv4.2 is expressed in both neuronal and glial cells and its regulation may involve potassium channel interacting proteins, alterations in the subcellular localization of the channel. (PMID:19596445)
- MiRP3 modulates Kv4.2 current activation, inactivation and recovery from inactivation. MiRP3 shifts the half-maximal voltage for activation and slows time to peak ~ 100%. (PMID:20498229)
- KChIP2 differentially regulates total and cell surface Kv4.2 protein expression and Kv4 current densities. (PMID:20709747)
- Seizures in Kv4.2 transgenic mice rapidly redistribute K+ channel subunit Kv4.2 to the neuronal surface, implicating a molecular substrate for the increased K+ current. (PMID:22122031)
- Autoantibodies from patients with encephalitis are specific for DPPX (a subunit of Kv4.2) without reacting to Kv4.2. (PMID:23225603)
- Our results support the hypothesis that KChIPs enhances Kv4.2 functional expression by a 1 : 1 suppression of the N-terminal FERN domain and by producing additional positive regulatory effects on functional channel expression. (PMID:23692269)
- KCND2 is expressed in human skin, but has not been associated with aging. (PMID:24037343)
- WT PrP(C), in a DPP6-dependent manner, modulated Kv4.2 channel properties, causing an increase in peak amplitude (PMID:24225951)
- study identified a de novo variant p.Val404Met in KCND2 in a family with identical twins affected with autism and severe seizures; findings suggest KCND2 is the causal gene for epilepsy in this family and has a role in the etiology of autism (PMID:24501278)
- S-glutathionylation of an auxiliary subunit confers redox sensitivity to Kv4 channel inactivation. (PMID:24675763)
- Subunit counting by single-molecule imaging revealed that the bound number of KChIP4 in each Kv4.2.KChIP4 complex was dependent on the expression level of KChIP4. (PMID:24811166)
- reflected in the immunoblotting data KV4.2 receptors were detected at higher levels of expression in patient with cortical dysplasia with intractable epilepsy. (PMID:25003238)
- A rare genetic mutation of the KCND2 gene, p.D612N, was identified in a single patient. Co-expression of mutant and wild-type KCND2 with KChIP2 demonstrated a gain-of-function phenotype. (PMID:25214526)
- The findings of this study suggest that variations in KCND2 genes are associated with both mild and severe persistent breast pain after breast cancer surgery. (PMID:25599232)
- The study provides the first piece of evidence for the role of H2S in regulating Ito potassium channels and also the specific motif in an ion channel labile for H2S regulation. (PMID:25756524)
- The stoichiometry of the Kv4.2-DPP10 complex was variable depending on the relative expression level of each subunit, with a preference for 4:2 stoichiometry (PMID:26209633)
- closed-state inactivation in Kv4.2 channels is a multistep process (PMID:26745419)
- Ca(2+)/calcineurin (CaN)/nuclear factor of activated T-cells (NFAT) c4 axis is required for neuritin-induced Kv4.2 transcriptional expression and potentiation of IA densities in cerebellum granule neurons. (PMID:27307045)
- Our results do not support the notion that accessory KChIP2 binding is a prerequisite for dendritic trafficking and functional surface expression of Kv4.2 channels, however, accessory KChIP2 binding may play a potential role in Kv4.2 modulation during intrinsic plasticity processes. (PMID:29385176)
- A mutation, V404M, in the Kv4.2 channel subunit is associated with infant-onset epilepsy and autism. V404M enhances inactivation of channels that have not opened but dramatically impairs inactivation after opening. Authors show that increased side-chain volume is largely responsible for these seemingly paradoxical effects. (PMID:29581270)
- KCND2 upregulation is a valuable prognostic biomarker in gastric cancer patients, in terms of overall survival and recurrence-free survival. (PMID:30051729)
- The atrial-specific phenotype suggests that targeting Kv4.2 might be effective in the treatment of nocturnal paroxysmal atrial fibrillation, avoiding adverse ventricular effects. (PMID:30571183)
- Modulation of Kv4.2/KChIP3 interaction by the ceroid lipofuscinosis neuronal 3 protein CLN3. (PMID:32641494)
- Potassium voltage-gated channel subfamily D member 2 induces an aggressive phenotype in lung adenocarcinoma. (PMID:32977724)
- KCND2 variants associated with global developmental delay differentially impair Kv4.2 channel gating. (PMID:34245260)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | kcnd2 | ENSDARG00000032799 |
| mus_musculus | Kcnd2 | ENSMUSG00000060882 |
| rattus_norvegicus | Kcnd2 | ENSRNOG00000067416 |
Paralogs (31): KCNG1 (ENSG00000026559), KCNQ1 (ENSG00000053918), KCNQ2 (ENSG00000075043), KCND1 (ENSG00000102057), KCNA7 (ENSG00000104848), KCNA1 (ENSG00000111262), KCNC4 (ENSG00000116396), KCNQ4 (ENSG00000117013), KCNS1 (ENSG00000124134), KCNC1 (ENSG00000129159), KCNA5 (ENSG00000130037), KCNC3 (ENSG00000131398), KCNA10 (ENSG00000143105), KCNA6 (ENSG00000151079), KCNS2 (ENSG00000156486), KCNB1 (ENSG00000158445), KCNF1 (ENSG00000162975), KCNV1 (ENSG00000164794), KCNC2 (ENSG00000166006), KCNV2 (ENSG00000168263), KCNG4 (ENSG00000168418), KCNS3 (ENSG00000170745), KCNG3 (ENSG00000171126), KCND3 (ENSG00000171385), KCNA3 (ENSG00000177272), KCNA2 (ENSG00000177301), KCNG2 (ENSG00000178342), KCNA4 (ENSG00000182255), KCNB2 (ENSG00000182674), KCNQ3 (ENSG00000184156), KCNQ5 (ENSG00000185760)
Protein
Protein identifiers
A-type voltage-gated potassium channel KCND2 — Q9NZV8 (reviewed: Q9NZV8)
Alternative names: Potassium voltage-gated channel subfamily D member 2, Voltage-gated potassium channel subunit Kv4.2
All UniProt accessions (3): A4D0V9, Q9NZV8, H7C445
UniProt curated annotations — full annotation on UniProt →
Function. Voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes, primarily in the brain. Mediates the major part of the dendritic A-type current I(SA) in brain neurons. This current is activated at membrane potentials that are below the threshold for action potentials. It regulates neuronal excitability, prolongs the latency before the first spike in a series of action potentials, regulates the frequency of repetitive action potential firing, shortens the duration of action potentials and regulates the back-propagation of action potentials from the neuronal cell body to the dendrites. Contributes to the regulation of the circadian rhythm of action potential firing in suprachiasmatic nucleus neurons, which regulates the circadian rhythm of locomotor activity. Functions downstream of the metabotropic glutamate receptor GRM5 and plays a role in neuronal excitability and in nociception mediated by activation of GRM5. Mediates the transient outward current I(to) in rodent heart left ventricle apex cells, but not in human heart, where this current is mediated by another family member. Forms tetrameric potassium-selective channels through which potassium ions pass in accordance with their electrochemical gradient. The channel alternates between opened and closed conformations in response to the voltage difference across the membrane. Can form functional homotetrameric channels and heterotetrameric channels that contain variable proportions of KCND2 and KCND3; channel properties depend on the type of pore-forming alpha subunits that are part of the channel. In vivo, membranes probably contain a mixture of heteromeric potassium channel complexes. Interaction with specific isoforms of the regulatory subunits KCNIP1, KCNIP2, KCNIP3 or KCNIP4 strongly increases expression at the cell surface and thereby increases channel activity; it modulates the kinetics of channel activation and inactivation, shifts the threshold for channel activation to more negative voltage values, shifts the threshold for inactivation to less negative voltages and accelerates recovery after inactivation. Likewise, interaction with DPP6 or DPP10 promotes expression at the cell membrane and regulates both channel characteristics and activity. Upon depolarization, the channel goes from a resting closed state (C state) to an activated but non-conducting state (C* state), from there, the channel may either inactivate (I state) or open (O state).
Subunit / interactions. Homotetramer or heterotetramer with KCND1 or KCND3. Associates with the regulatory subunits KCNIP2, KCNIP3 and KCNIP4. Interacts with the regulatory subunit KCNIP1; this interaction mediates the capture of both the N- and C-terminus of KCND2, preventing N-type inactivation and stabilizing the S6 conformation, thereby accelerating closed state inactivation and recovery. In vivo, probably exists as heteromeric complex containing variable proportions of KCND1, KCND2, KCND3, KCNIP1, KCNIP2, KCNIP3, KCNIP4, DPP6 and DPP10. The tetrameric channel can associate with up to four regulatory subunits, such as KCNIP2 or KCNIP4. Interaction with four KCNIP4 chains does not reduce interaction with DPP10. Interacts with DLG4 and NCS1/FREQ. Interacts with DLG1. Probably part of a complex consisting of KCNIP1, KCNIP2 isoform 3 and KCND2. Interacts with FLNA, FLNC and DPP10. Interacts (via S1 and S2 helices) with DPP6; this interaction stabilizes the conformation of the S1-S2 helices and facilitates S4 conformational change, including S4 sliding up and down, thereby accelerating activation, inactivation, and recovery.
Subcellular location. Cell membrane. Cell projection. Dendrite. Synapse. Perikaryon. Postsynaptic cell membrane. Dendritic spine. Cell junction.
Tissue specificity. Detected in ovary, in corpus luteum and in granulosa and theca cells in the follicle (at protein level). Highly expressed throughout the brain. Detected in amygdala, caudate nucleus, cerebellum, hippocampus, substantia nigra and thalamus. Expression is not detectable or very low in heart, kidney, liver, lung, pancreas and skeletal muscle. Not detectable in human heart atrium.
Post-translational modifications. Phosphorylation at Ser-438 in response to MAPK activation is increased in stimulated dendrites. Interaction with KCNIP2 and DPP6 propomtes phosphorylation by PKA at Ser-552. Phosphorylation at Ser-552 has no effect on interaction with KCNIP3, but is required for the regulation of channel activity by KCNIP3. Phosphorylation at Ser-552 leads to KCND2 internalization. Phosphorylated by MAPK in response to signaling via the metabotropic glutamate receptor GRM5. Phosphorylation at Ser-616 is required for the down-regulation of neuronal A-type currents in response to signaling via GRM5.
Disease relevance. KNCD2 mutations have been found in a family with autism and epilepsy and may play a role in disease pathogenesis. Autism is a complex multifactorial, pervasive developmental disorder characterized by impairments in reciprocal social interaction and communication, restricted and stereotyped patterns of interests and activities, and the presence of developmental abnormalities by 3 years of age. Epilepsy is characterized by paroxysmal transient disturbances of the electrical activity of the brain that may be manifested as episodic impairment or loss of consciousness, abnormal motor phenomena, psychic or sensory disturbances, or perturbation of the autonomic nervous system. A KCND2 mutation leading to the production of a C-terminally truncated protein has been identified in a patient with epilepsy. Epilepsy is characterized by paroxysmal transient disturbances of the electrical activity of the brain that may be manifested as episodic impairment or loss of consciousness, abnormal motor phenomena, psychic or sensory disturbances, or perturbation of the autonomic nervous system.
Domain organisation. The transmembrane segment S4 functions as a voltage-sensor and is characterized by a series of positively charged amino acids at every third position. Channel opening and closing is effected by a conformation change that affects the position and orientation of the voltage-sensor paddle formed by S3 and S4 within the membrane. A transmembrane electric field that is positive inside would push the positively charged S4 segment outwards, thereby opening the pore, while a field that is negative inside would pull the S4 segment inwards and close the pore. Changes in the position and orientation of S4 are then transmitted to the activation gate formed by the inner helix bundle via the S4-S5 linker region. The N-terminal cytoplasmic region can mediate N-type inactivation by physically blocking the channel. This probably does not happen in vivo, where the N-terminal region mediates interaction with regulatory subunits, such as KCNIP1 and KCNIP2. The zinc binding sites in the N-terminal domain are important for tetramerization and assembly of a functional channel complex. The channel undergoes closed-state inactivation, where conformation changes lead to inactivation through an intermediate state involving breakdown of its 4-fold symmetry. that governs the distinct transient, fast-inactivating currents. The C-terminal cytoplasmic region is important for normal expression at the cell membrane and modulates the voltage-dependence of channel activation and inactivation. It is required for interaction with KCNIP2, and probably other family members as well.
Miscellaneous. The transient neuronal A-type potassium current called I(SA) is triggered at membrane potentials that are below the threshold for action potentials. It inactivates rapidly and recovers rapidly from inactivation. It regulates the firing of action potentials and plays a role in synaptic integration and plasticity. Potassium channels containing KCND2 account for about 80% of the neuronal A-type potassium current. In contrast, the potassium channel responsible for the cardiac I(to) current differs between species; it is mediated by KCND2 in rodents. In human and other non-rodents KCND3 may play an equivalent role. Is specifically and reversibly inhibited by the scorpion toxin Ts8 (AC P69940).
Similarity. Belongs to the potassium channel family. D (Shal) (TC 1.A.1.2) subfamily. Kv4.2/KCND2 sub-subfamily.
RefSeq proteins (1): NP_036413* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000210 | BTB/POZ_dom | Domain |
| IPR003131 | T1-type_BTB | Domain |
| IPR003968 | K_chnl_volt-dep_Kv | Family |
| IPR003975 | K_chnl_volt-dep_Kv4 | Family |
| IPR004055 | K_chnl_volt-dep_Kv4.2 | Family |
| IPR005821 | Ion_trans_dom | Domain |
| IPR011333 | SKP1/BTB/POZ_sf | Homologous_superfamily |
| IPR021645 | Shal-type_N | Domain |
| IPR024587 | K_chnl_volt-dep_Kv4_C | Domain |
| IPR027359 | Volt_channel_dom_sf | Homologous_superfamily |
| IPR028325 | VG_K_chnl | Family |
Pfam: PF00520, PF02214, PF11601, PF11879
Catalyzed reactions (Rhea), 1 shown:
- K(+)(in) = K(+)(out) (RHEA:29463)
UniProt features (116 total): mutagenesis site 30, helix 26, strand 9, modified residue 9, topological domain 8, binding site 8, transmembrane region 6, region of interest 6, sequence conflict 4, turn 4, intramembrane region 2, short sequence motif 2, chain 1, sequence variant 1
Structure
Experimental structures (PDB)
16 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7UKG | ELECTRON MICROSCOPY | 2.24 |
| 7UKH | ELECTRON MICROSCOPY | 2.33 |
| 7UK5 | ELECTRON MICROSCOPY | 2.76 |
| 7UKD | ELECTRON MICROSCOPY | 2.88 |
| 7F0J | ELECTRON MICROSCOPY | 2.9 |
| 7UKC | ELECTRON MICROSCOPY | 3 |
| 7UKE | ELECTRON MICROSCOPY | 3.01 |
| 7UKF | ELECTRON MICROSCOPY | 3.02 |
| 7E83 | ELECTRON MICROSCOPY | 3.1 |
| 7E84 | ELECTRON MICROSCOPY | 3.1 |
| 7F3F | ELECTRON MICROSCOPY | 3.1 |
| 7E7Z | ELECTRON MICROSCOPY | 3.2 |
| 7E87 | ELECTRON MICROSCOPY | 3.4 |
| 7E8E | ELECTRON MICROSCOPY | 3.9 |
| 7E8B | ELECTRON MICROSCOPY | 4.2 |
| 7E8H | ELECTRON MICROSCOPY | 4.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NZV8-F1 | 72.28 | 0.40 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 105 (in chain a); 111 (in chain b); 132 (in chain a); 133 (in chain a); 370; 371; 372; 373
Post-translational modifications (9): 38, 438, 548, 552, 572, 575, 602, 607, 616
Mutagenesis-validated functional residues (30):
| Position | Phenotype |
|---|---|
| 309 | increases peak current amplitude and causes a negative shift in the voltage-dependence of activation. |
| 311 | no effect on peak current amplitude, but causes a positive shift in the voltage-dependence of activation. may increase t |
| 312 | increases peak current amplitude and causes a positive shift in the voltage-dependence of activation. |
| 313 | causes a positive shift in the voltage-dependence of activation. may decrease the affinity for the closed-inactivated st |
| 314 | loss of channel activity. |
| 315 | increases peak current amplitude but has a minor effect on the voltage-dependence of activation. |
| 316 | increases peak current amplitude and causes a positive shift in the voltage-dependence of activation. |
| 317 | increases peak current amplitude and causes a positive shift in the voltage-dependence of activation. |
| 318 | increases peak current amplitude and causes a positive shift in the voltage-dependence of activation. |
| 319 | may impair protein folding. |
| 320 | increases peak current amplitude and causes a positive shift in the voltage-dependence of activation. |
| 320 | increases peak current amplitude and slows the onset of inactivation at low voltage, but has no effect on the voltage-de |
| 322 | increases peak current amplitude and causes a positive shift in the voltage-dependence of activation. may increase the a |
| 323 | slightly increases peak current amplitude and causes a negative shift in the voltage-dependence of activation. may decre |
| 324 | may impair protein folding. |
| 327 | loss of channel activity. |
| 328 | may impair protein folding. |
| 329 | loss of channel activity. |
| 397 | may impair protein folding. |
| 398 | loss of channel activity. |
| 399 | may impair protein folding. |
| 401 | may impair protein folding. |
| 402–404 | increases pak current amplitude and causes a positive shift in the voltage-dependence of activation and steady-state ina |
| 403 | loss of channel activity. |
| 405 | loss of channel activity. |
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-1296072 | Voltage gated Potassium channels |
| R-HSA-5576894 | Phase 1 - inactivation of fast Na+ channels |
| R-HSA-112316 | Neuronal System |
| R-HSA-1296071 | Potassium Channels |
| R-HSA-397014 | Muscle contraction |
| R-HSA-5576891 | Cardiac conduction |
MSigDB gene sets: 262 (showing top):
GOBP_CIRCADIAN_RHYTHM, GOBP_POTASSIUM_ION_TRANSPORT, E2F_Q4, E2F_Q4_01, RRAGTTGT_UNKNOWN, TAATAAT_MIR126, GOBP_BEHAVIOR, GOBP_CIRCULATORY_SYSTEM_PROCESS, REACTOME_VOLTAGE_GATED_POTASSIUM_CHANNELS, TGCACTT_MIR519C_MIR519B_MIR519A, REACTOME_POTASSIUM_CHANNELS, GCANCTGNY_MYOD_Q6, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_CELL_CELL_SIGNALING, GOBP_SENSORY_PERCEPTION_OF_PAIN
GO Biological Process (16): action potential (GO:0001508), muscle contraction (GO:0006936), chemical synaptic transmission (GO:0007268), regulation of heart contraction (GO:0008016), neuronal action potential (GO:0019228), sensory perception of pain (GO:0019233), locomotor rhythm (GO:0045475), protein homooligomerization (GO:0051260), cellular response to hypoxia (GO:0071456), potassium ion transmembrane transport (GO:0071805), membrane repolarization (GO:0086009), monoatomic ion transport (GO:0006811), potassium ion transport (GO:0006813), monoatomic ion transmembrane transport (GO:0034220), transmembrane transport (GO:0055085), regulation of postsynaptic membrane potential (GO:0060078)
GO Molecular Function (7): voltage-gated potassium channel activity (GO:0005249), A-type (transient outward) potassium channel activity (GO:0005250), metal ion binding (GO:0046872), voltage-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (GO:1905030), monoatomic ion channel activity (GO:0005216), potassium channel activity (GO:0005267), protein binding (GO:0005515)
GO Cellular Component (18): plasma membrane (GO:0005886), voltage-gated potassium channel complex (GO:0008076), neuronal cell body membrane (GO:0032809), neuronal cell body (GO:0043025), dendritic spine (GO:0043197), perikaryon (GO:0043204), plasma membrane raft (GO:0044853), postsynaptic membrane (GO:0045211), anchoring junction (GO:0070161), Kv4.2-KChIP2 channel complex (GO:0071193), glutamatergic synapse (GO:0098978), GABA-ergic synapse (GO:0098982), postsynaptic specialization membrane (GO:0099634), membrane (GO:0016020), dendrite (GO:0030425), monoatomic ion channel complex (GO:0034702), cell projection (GO:0042995), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Potassium Channels | 1 |
| Cardiac conduction | 1 |
| Neuronal System | 1 |
| Muscle contraction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of membrane potential | 3 |
| cellular anatomical structure | 3 |
| transport | 2 |
| neuronal cell body | 2 |
| postsynapse | 2 |
| synaptic membrane | 2 |
| cell junction | 2 |
| synapse | 2 |
| muscle system process | 1 |
| anterograde trans-synaptic signaling | 1 |
| heart contraction | 1 |
| regulation of blood circulation | 1 |
| action potential | 1 |
| transmission of nerve impulse | 1 |
| sensory perception | 1 |
| locomotory behavior | 1 |
| circadian behavior | 1 |
| protein complex oligomerization | 1 |
| response to hypoxia | 1 |
| cellular response to stress | 1 |
| cellular response to decreased oxygen levels | 1 |
| potassium ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| metal ion transport | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| cellular process | 1 |
| potassium channel activity | 1 |
| voltage-gated monoatomic cation channel activity | 1 |
| outward rectifier potassium channel activity | 1 |
| cation binding | 1 |
| voltage-gated monoatomic ion channel activity | 1 |
| regulation of postsynaptic membrane potential | 1 |
| monoatomic ion transmembrane transporter activity | 1 |
| channel activity | 1 |
| monoatomic cation channel activity | 1 |
| potassium ion transmembrane transporter activity | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
Protein interactions and networks
STRING
2570 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KCND2 | KCNIP2 | Q9NS61 | 991 |
| KCND2 | KCNIP1 | Q9NZI2 | 981 |
| KCND2 | DPP10 | Q8N608 | 969 |
| KCND2 | KCNIP3 | Q9Y2W7 | 941 |
| KCND2 | DPP6 | P42658 | 888 |
| KCND2 | IRX5 | P78411 | 884 |
| KCND2 | KCND3 | Q9UK17 | 882 |
| KCND2 | KCNIP4 | Q6PIL6 | 860 |
| KCND2 | KCNE2 | Q9Y6J6 | 839 |
| KCND2 | IRX1 | P78414 | 839 |
| KCND2 | DLG4 | P78352 | 826 |
| KCND2 | NCS1 | P36610 | 797 |
| KCND2 | KCNH2 | Q12809 | 791 |
| KCND2 | KCNE1 | P15382 | 760 |
| KCND2 | KCNAB2 | Q13303 | 744 |
IntAct
13 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| KCND2 | KCNIP2 | psi-mi:“MI:0915”(physical association) | 0.550 |
| KCNIP2 | KCND2 | psi-mi:“MI:0915”(physical association) | 0.550 |
| KCND2 | BAG3 | psi-mi:“MI:0914”(association) | 0.530 |
| KCND2 | KCNIP2 | psi-mi:“MI:0407”(direct interaction) | 0.520 |
| KCND2 | KCNIP2 | psi-mi:“MI:0914”(association) | 0.520 |
| KCNIP1 | KCND2 | psi-mi:“MI:0407”(direct interaction) | 0.520 |
| KCNIP1 | KCNIP2 | psi-mi:“MI:0914”(association) | 0.520 |
| KCND2 | USP20 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (46): KCTD17 (Affinity Capture-MS), HSPA8 (Affinity Capture-MS), BAG1 (Affinity Capture-MS), KCTD2 (Affinity Capture-MS), BAG3 (Affinity Capture-MS), GNB4 (Affinity Capture-MS), KCTD5 (Affinity Capture-MS), STUB1 (Affinity Capture-MS), KCND2 (Affinity Capture-Western), NCS1 (Affinity Capture-Western), FLNC (Two-hybrid), FLNC (Reconstituted Complex), KCNIP3 (Affinity Capture-Western), KCTD17 (Affinity Capture-MS), BAG1 (Affinity Capture-MS)
ESM2 similar proteins: A0JPH4, A1DWM3, A4QN56, A6H8H5, B0UYT5, B3MG58, B3NSE1, B4GAP7, B4KR05, B4LPX5, B4QBN2, O18868, O60741, P08911, P11483, P15387, P20309, P41984, P59995, Q03717, Q0P5V9, Q14721, Q1LUC3, Q1LUQ4, Q291H8, Q4V887, Q4ZHA6, Q5BKX6, Q5VW38, Q62897, Q63099, Q63881, Q6ZSS7, Q8C145, Q8CBH5, Q8HYZ1, Q91WD0, Q92953, Q95167, Q95L11
Diamond homologs: A2BDX4, A4K2M4, A4K2N8, A4K2P6, A4K2Q6, A4K2R3, A4K2S2, A4K2T1, A4K2V2, A4K2W6, A4K2X4, A4K2Y2, A6H8H5, D4AD53, D4ADX7, G5EFC3, O18868, O35173, O35174, O73606, O88758, O88759, P10499, P15384, P15385, P15387, P15388, P16388, P16390, P17970, P17971, P17972, P22001, P22459, P22739, P25122, P48547, P59053, P59994, P59995
SIGNOR signaling
8 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| IRX5 | “down-regulates quantity by repression” | KCND2 | “transcriptional regulation” |
| MAPK1 | “up-regulates activity” | KCND2 | phosphorylation |
| FLNA | “up-regulates activity” | KCND2 | binding |
| KCNIP4 | “up-regulates activity” | KCND2 | relocalization |
| DPP6 | “up-regulates activity” | KCND2 | relocalization |
| DPP10 | “up-regulates activity” | KCND2 | relocalization |
Disease & clinical
Clinical variants and AI predictions
ClinVar
493 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 3 |
| Uncertain significance | 282 |
| Likely benign | 170 |
| Benign | 20 |
Top pathogenic / likely-pathogenic (6)
| Variant ID | HGVS | Classification |
|---|---|---|
| 144007 | NM_012281.3(KCND2):c.1210G>A (p.Val404Met) | Pathogenic |
| 1457866 | NM_012281.3(KCND2):c.913C>T (p.Arg305Cys) | Pathogenic |
| 2007789 | NM_012281.3(KCND2):c.1096G>T (p.Val366Phe) | Pathogenic |
| 1297091 | NM_012281.3(KCND2):c.1204G>C (p.Val402Leu) | Likely pathogenic |
| 1308937 | NM_012281.3(KCND2):c.1184T>C (p.Val395Ala) | Likely pathogenic |
| 1473173 | NM_012281.3(KCND2):c.1215T>G (p.Ile405Met) | Likely pathogenic |
SpliceAI
3879 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:120540726:GGA:G | donor_gain | 1.0000 |
| 7:120540727:GA:G | donor_gain | 1.0000 |
| 7:120570988:T:G | acceptor_gain | 1.0000 |
| 7:120647027:TTGA:T | donor_gain | 1.0000 |
| 7:120732902:GGT:G | acceptor_gain | 1.0000 |
| 7:120732902:GGTAT:G | acceptor_gain | 1.0000 |
| 7:120733062:AAAGG:A | donor_loss | 1.0000 |
| 7:120733063:AAGGT:A | donor_loss | 1.0000 |
| 7:120733064:AGG:A | donor_loss | 1.0000 |
| 7:120733065:GGT:G | donor_loss | 1.0000 |
| 7:120733066:GTG:G | donor_loss | 1.0000 |
| 7:120733067:T:A | donor_loss | 1.0000 |
| 7:120741531:T:G | acceptor_gain | 1.0000 |
| 7:120741531:TA:T | acceptor_loss | 1.0000 |
| 7:120741532:A:AG | acceptor_gain | 1.0000 |
| 7:120741532:A:G | acceptor_loss | 1.0000 |
| 7:120741533:G:GG | acceptor_gain | 1.0000 |
| 7:120741533:GA:G | acceptor_gain | 1.0000 |
| 7:120741533:GAA:G | acceptor_gain | 1.0000 |
| 7:120741533:GAAA:G | acceptor_gain | 1.0000 |
| 7:120741625:TGCAG:T | donor_loss | 1.0000 |
| 7:120741627:CAG:C | donor_loss | 1.0000 |
| 7:120741628:AG:A | donor_loss | 1.0000 |
| 7:120741629:GG:G | donor_loss | 1.0000 |
| 7:120741630:G:T | donor_loss | 1.0000 |
| 7:120741631:T:G | donor_loss | 1.0000 |
| 7:120741771:A:AG | acceptor_gain | 1.0000 |
| 7:120742505:A:AG | acceptor_gain | 1.0000 |
| 7:120742507:CAGTC:C | acceptor_loss | 1.0000 |
| 7:120742508:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
4144 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:120274775:G:T | S48I | 1.000 |
| 7:120274778:G:T | G49V | 1.000 |
| 7:120274786:T:C | F52L | 1.000 |
| 7:120274787:T:C | F52S | 1.000 |
| 7:120274788:C:A | F52L | 1.000 |
| 7:120274788:C:G | F52L | 1.000 |
| 7:120274826:C:T | T65I | 1.000 |
| 7:120274832:T:A | L67Q | 1.000 |
| 7:120274834:G:C | G68R | 1.000 |
| 7:120274835:G:A | G68D | 1.000 |
| 7:120274835:G:T | G68V | 1.000 |
| 7:120274855:T:C | F75L | 1.000 |
| 7:120274857:C:A | F75L | 1.000 |
| 7:120274857:C:G | F75L | 1.000 |
| 7:120274886:T:C | F85S | 1.000 |
| 7:120274891:C:A | R87S | 1.000 |
| 7:120274892:G:C | R87P | 1.000 |
| 7:120274919:T:C | L96P | 1.000 |
| 7:120274927:T:G | Y99D | 1.000 |
| 7:120274931:G:C | R100P | 1.000 |
| 7:120274963:T:C | C111R | 1.000 |
| 7:120274988:T:C | L119P | 1.000 |
| 7:120274993:T:C | F121L | 1.000 |
| 7:120274995:C:A | F121L | 1.000 |
| 7:120274995:C:G | F121L | 1.000 |
| 7:120274996:T:A | F122I | 1.000 |
| 7:120274996:T:C | F122L | 1.000 |
| 7:120274998:T:A | F122L | 1.000 |
| 7:120274998:T:G | F122L | 1.000 |
| 7:120275026:T:C | C132R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000000702 (7:120373820 C>A), RS1000001241 (7:120457349 C>T), RS1000005787 (7:120286768 A>G), RS1000012482 (7:120509351 T>C), RS1000017738 (7:120277414 T>C), RS1000025559 (7:120327101 T>A,C), RS1000026182 (7:120280120 A>G), RS1000026858 (7:120688862 A>G), RS1000034075 (7:120637157 G>A,C), RS1000035829 (7:120506777 T>C), RS1000040078 (7:120567458 G>A,T), RS1000048147 (7:120702661 G>A,T), RS1000051162 (7:120479383 A>G), RS1000061299 (7:120560527 G>A), RS1000063029 (7:120740198 T>C)
Disease associations
OMIM: gene MIM:605410 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder | Strong | Autosomal dominant |
| KCND2-related neurodevelopmental disorder with or without seizures | Moderate | Autosomal dominant |
| complex neurodevelopmental disorder | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| KCND2-related neurodevelopmental disorder with or without seizures | Moderate | AD |
Mondo (3): neurodevelopmental disorder (MONDO:0700092), complex neurodevelopmental disorder (MONDO:0100038), KCND2-related neurodevelopmental disorder with or without seizures (MONDO:1040003)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001471_7 | Alcohol and nicotine co-dependence | 4.000000e-06 |
| GCST001537_10 | Immune reponse to smallpox (secreted IL-12p40) | 3.000000e-09 |
| GCST006979_147 | Heel bone mineral density | 2.000000e-15 |
| GCST006979_149 | Heel bone mineral density | 4.000000e-09 |
| GCST006979_845 | Heel bone mineral density | 3.000000e-10 |
| GCST009439_21 | Age-related cognitive decline (language) (slope of z-scores) | 4.000000e-06 |
| GCST010540_3 | Mean degree of stenosis | 2.000000e-07 |
| GCST010541_7 | Maximum stenosis | 9.000000e-07 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004645 | response to vaccine |
| EFO:0004873 | cytokine measurement |
| EFO:0009270 | heel bone mineral density |
| EFO:0007710 | cognitive decline measurement |
| EFO:0006501 | carotid plaque build |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2362996 (PROTEIN FAMILY), CHEMBL5885 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 115 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL2107383 | VERNAKALANT HYDROCHLORIDE | 4 | 115 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: vgic — Voltage-gated potassium channels (Kv)
Most potent curated ligand interactions (8 total), top 8:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| phrixotoxin 1 | Channel blocker | 8.3 | pIC50 |
| phrixotoxin 2 | Channel blocker | 8.3 | pIC50 |
| heteropodatoxin-2 | Channel blocker | 6.5 | pIC50 |
| sBmTX 3 | Channel blocker | 6.0 | pIC50 |
| arachidonic acid | Channel blocker | 5.7 | pIC50 |
| quinidine | Channel blocker | 4.9 | pIC50 |
| riluzole | Channel blocker | 3.89 | pIC50 |
| fampridine | Channel blocker | 2.3 | pIC50 |
ChEMBL bioactivities
2 potent at pChembl≥5 of 7 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.82 | Ki | 0.15 | nM | CHEMBL5722941 |
| 9.74 | IC50 | 0.18 | nM | CHEMBL5722941 |
PubChem BioAssay actives
2 with measured affinity, of 41 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 3-[(1R,2aS,4S,5aS,8aS,10S,11aR,14aS,16S,17aS,19S,20aS,22S,23aS,25S,26aS,28S,29aS,31R,32aS,35aS,36R,38aS,39S,41aS,42S,44aS,45S,48R,50aS,51S,53aS,54S,56aS,57S,59aS,60S,63S,66S,69S,72S,75S,78S,87R,93S,96S,99S)-17a,20a,23a,53a,63-pentakis(4-aminobutyl)-31-[[(2S)-2-[[(2S)-6-amino-2-[[(2S)-5-carbamimidamido-2-[[(2S)-5-carbamimidamido-2-[[(2S)-1-[(2S)-5-oxopyrrolidine-2-carbonyl]pyrrolidine-2-carbonyl]amino]pentanoyl]amino]pentanoyl]amino]hexanoyl]amino]-4-methylpentanoyl]amino]-16,29a,72,78-tetrakis(2-amino-2-oxoethyl)-14a,26a-bis(3-amino-3-oxopropyl)-2a,38a,66-tribenzyl-28,50a,57-tris[(2S)-butan-2-yl]-4,5a,19,42,45,69-hexakis(3-carbamimidamidopropyl)-51,54-bis(2-carboxyethyl)-56a,99-bis(carboxymethyl)-36-[[(2S,3S)-1-(carboxymethylamino)-3-methyl-1-oxopentan-2-yl]carbamoyl]-39,60-bis[(1R)-1-hydroxyethyl]-75,93-bis(hydroxymethyl)-32a,35a,59a-tris[(4-hydroxyphenyl)methyl]-22-(1H-imidazol-4-ylmethyl)-96-(1H-indol-3-ylmethyl)-41a-methyl-25-(2-methylpropyl)-1a,3,4a,6,7a,9,10a,13a,15,16a,18,19a,21,22a,24,25a,27,28a,30,31a,34a,37a,38,40a,41,43a,44,47,49a,50,52a,53,55a,56,58a,59,61a,62,65,68,71,74,77,80,83,86,89,92,95,98-pentacontaoxo-33,34,63a,64a,67a,68a-hexathia-a,2,3a,5,6a,8,9a,12a,14,15a,17,18a,20,21a,23,24a,26,27a,29,30a,33a,36a,37,39a,40,42a,43,46,48a,49,51a,52,54a,55,57a,58,60a,61,64,67,70,73,76,79,82,85,88,91,94,97-pentacontazapentacyclo[85.74.4.448,111.010,14.0144,148]nonahexacontahectan-8a-yl]propanoic acid | 2198828: Binding affinity to KV channel (unknown origin) assessed as inhibition constant | ki | 0.0001 | uM |
CTD chemical–gene interactions
35 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, decreases methylation | 5 |
| trichostatin A | affects cotreatment, decreases expression | 3 |
| entinostat | decreases expression, affects cotreatment | 2 |
| Panobinostat | affects cotreatment, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | increases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, decreases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | decreases expression, affects cotreatment | 1 |
| MRK 003 | increases expression | 1 |
| incobotulinumtoxinA | increases expression | 1 |
| Decitabine | affects expression | 1 |
| Vorinostat | decreases expression | 1 |
| Adenosine Triphosphate | affects binding, decreases expression, increases abundance, increases expression, decreases abundance | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Cisplatin | affects expression | 1 |
| Dexamethasone | decreases expression | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Glucose | affects binding, decreases expression, increases expression, increases import, decreases import | 1 |
| Lipopolysaccharides | decreases expression, affects cotreatment | 1 |
| Ouabain | increases expression | 1 |
| Phthalic Acids | increases methylation | 1 |
| Progesterone | affects cotreatment, decreases expression | 1 |
| Rotenone | decreases expression | 1 |
| Testosterone | affects cotreatment, increases expression, decreases expression | 1 |
| 8-Bromo Cyclic Adenosine Monophosphate | increases expression | 1 |
| 1-Methyl-4-phenylpyridinium | decreases expression | 1 |
ChEMBL screening assays
23 unique, capped per target: 22 binding, 1 toxicity
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1787442 | Binding | Inhibition of human recombinant Kv channel at 10 uM by radioligand binding assay | Structure-activity relationships of pyrrole based S-nitrosoglutathione reductase inhibitors: pyrrole regioisomers and propionic acid replacement. — Bioorg Med Chem Lett |
| CHEMBL5522525 | Toxicity | Inhibition of human K+ channel by automated electrophysiology | Discovery of Clinical Candidate AZD5462, a Selective Oral Allosteric RXFP1 Agonist for Treatment of Heart Failure. — J Med Chem |
Cellosaurus cell lines
5 cell lines: 3 cancer cell line, 1 spontaneously immortalized cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1K7 | PrecisION hKv4.2/KCHiP2-CHO | Spontaneously immortalized cell line | Female |
| CVCL_D1TA | Abcam U-87MG KCND2 KO | Cancer cell line | Male |
| CVCL_H518 | HEK293/hKv4.2 | Transformed cell line | Female |
| CVCL_ST97 | HAP1 KCND2 (-) 1 | Cancer cell line | Male |
| CVCL_ST98 | HAP1 KCND2 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
204 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
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Related Atlas pages
- Associated diseases: complex neurodevelopmental disorder, neurodevelopmental disorder, KCND2-related neurodevelopmental disorder with or without seizures
- Targeted by drugs: Dalfampridine, Quinidine, Riluzole
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): alcohol and nicotine codependence, KCND2-related neurodevelopmental disorder with or without seizures, neurodevelopmental disorder