KCND3-IT1

Summary

KCND3-IT1 (KCND3 intronic transcript 1, HGNC:41350) is a long non-coding RNA gene on chromosome 1p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41350
Approved symbol	KCND3-IT1
Name	KCND3 intronic transcript 1
Location	1p13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232558
Ensembl biotype	lncRNA
Entrez	100874295
RNAcentral	URS0000185D44 — lncRNA, 376 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000439736

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000439736 — 2 exons

Exon	Start	End
ENSE00001654269	111853762	111854049
ENSE00001691972	111856818	111856905

Expression profiles

Bgee: expression breadth broad, 86 present calls, max score 98.32.

Top tissues by expression

86 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	98.32	gold quality
skeletal muscle tissue	UBERON:0001134	76.43	gold quality
ganglionic eminence	UBERON:0004023	68.84	gold quality
corpus callosum	UBERON:0002336	66.05	gold quality
gall bladder	UBERON:0002110	65.34	gold quality
liver	UBERON:0002107	61.14	gold quality
islet of Langerhans	UBERON:0000006	59.64	gold quality
blood	UBERON:0000178	57.47	gold quality
monocyte	CL:0000576	57.16	gold quality
muscle of leg	UBERON:0001383	55.26	gold quality
gastrocnemius	UBERON:0001388	54.62	gold quality
pancreas	UBERON:0001264	54.22	gold quality
right hemisphere of cerebellum	UBERON:0014890	53.42	gold quality
right lobe of liver	UBERON:0001114	53.32	gold quality
cerebellum	UBERON:0002037	52.54	gold quality
cerebellar cortex	UBERON:0002129	52.52	gold quality
heart left ventricle	UBERON:0002084	52.43	gold quality
calcaneal tendon	UBERON:0003701	52.22	gold quality
cerebellar hemisphere	UBERON:0002245	52.19	gold quality
prefrontal cortex	UBERON:0000451	52.02	gold quality
body of pancreas	UBERON:0001150	50.95	gold quality
heart	UBERON:0000948	50.85	gold quality
tibial artery	UBERON:0007610	50.66	gold quality
stomach	UBERON:0000945	50.21	gold quality
urinary bladder	UBERON:0001255	49.86	gold quality
right lung	UBERON:0002167	49.84	gold quality
body of stomach	UBERON:0001161	49.32	gold quality
lower esophagus muscularis layer	UBERON:0035833	48.87	gold quality
lower esophagus	UBERON:0013473	48.83	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	48.49	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.16

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.