KCNG3
geneOn this page
Also known as Kv6.3
Summary
KCNG3 (potassium voltage-gated channel modifier subfamily G member 3, HGNC:18306) is a protein-coding gene on chromosome 2p21, encoding Voltage-gated potassium channel regulatory subunit KCNG3 (Q8TAE7). Regulatory subunit of the voltage-gated potassium (Kv) channel which, when coassembled with KCNB1, modulates the kinetics parameters of the heterotetrameric channel namely the inactivation and deactivation rate.
Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ion channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. This gene encodes a member of the potassium channel, voltage-gated, subfamily G. This member is a gamma subunit functioning as a modulatory molecule. Alternative splicing results in two transcript variants encoding distinct isoforms.
Source: NCBI Gene 170850 — RefSeq curated summary.
At a glance
- GWAS associations: 11
- Clinical variants (ClinVar): 51 total
- Druggable target: yes
- MANE Select transcript:
NM_133329
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:18306 |
| Approved symbol | KCNG3 |
| Name | potassium voltage-gated channel modifier subfamily G member 3 |
| Location | 2p21 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Kv6.3 |
| Ensembl gene | ENSG00000171126 |
| Ensembl biotype | protein_coding |
| OMIM | 606767 |
| Entrez | 170850 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000306078, ENST00000394973
RefSeq mRNA: 2 — MANE Select: NM_133329
NM_133329, NM_172344
CCDS: CCDS1809, CCDS42674
Canonical transcript exons
ENST00000306078 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001168755 | 42492837 | 42493982 |
| ENSE00001216024 | 42442017 | 42444579 |
Expression profiles
Bgee: expression breadth broad, 80 present calls, max score 72.60.
FANTOM5 (CAGE): breadth broad, TPM avg 1.0838 / max 62.8118, expressed in 306 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 28016 | 1.0838 | 306 |
Top tissues by expression
230 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| islet of Langerhans | UBERON:0000006 | 72.60 | gold quality |
| adrenal tissue | UBERON:0018303 | 65.22 | gold quality |
| endothelial cell | CL:0000115 | 62.52 | silver quality |
| prefrontal cortex | UBERON:0000451 | 61.13 | gold quality |
| right adrenal gland | UBERON:0001233 | 60.80 | gold quality |
| left adrenal gland | UBERON:0001234 | 60.19 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 60.08 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 59.98 | silver quality |
| endometrium | UBERON:0001295 | 59.77 | gold quality |
| adrenal gland | UBERON:0002369 | 59.52 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 58.99 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 58.42 | silver quality |
| adrenal cortex | UBERON:0001235 | 57.89 | gold quality |
| entorhinal cortex | UBERON:0002728 | 57.88 | silver quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 56.70 | silver quality |
| superior frontal gyrus | UBERON:0002661 | 56.59 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 56.06 | gold quality |
| frontal cortex | UBERON:0001870 | 55.74 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 55.59 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 55.47 | gold quality |
| nucleus accumbens | UBERON:0001882 | 54.71 | gold quality |
| neocortex | UBERON:0001950 | 54.13 | gold quality |
| cerebral cortex | UBERON:0000956 | 54.06 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 53.66 | gold quality |
| caudate nucleus | UBERON:0001873 | 53.31 | gold quality |
| putamen | UBERON:0001874 | 52.73 | gold quality |
| Ammon’s horn | UBERON:0001954 | 51.97 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 51.96 | gold quality |
| forebrain | UBERON:0001890 | 51.73 | gold quality |
| temporal lobe | UBERON:0001871 | 51.32 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.61 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
141 targeting KCNG3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-3162-3P | 100.00 | 65.37 | 363 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-6740-5P | 100.00 | 65.64 | 932 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
Literature-anchored findings (GeneRIF, showing 5)
- These results indicate that Kv6.3 is a novel member of the voltage-gated K(+) channel which functions as a modulatory subunit of the Kv2.1 channel. (PMID:11852086)
- Obligatory heterotetramerization of three previously uncharacterized Kv channel subunits identified in human genome (Kv6.3)(Kv10.1) (Kv11.1) (PMID:12060745)
- [review] an overview of the current status of data linking K(V)10.1 to cancer, and techniques that could exploit K(V)10.1’s properties for the management of cancer (PMID:22204340)
- the correlation between dismal prognosis and Kv10.1 expression to patients with brain metastases or glioblastoma multiforme and, moreover, they strongly suggest a role of tricyclic antidepressants for personalized therapy of brain malignancies. (PMID:26530050)
- Original association of ion transporters mediates the ECM-induced breast cancer cell survival: Kv10.1-Orai1-SPCA2 partnership. (PMID:30718673)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | kcng3 | ENSDARG00000061622 |
| mus_musculus | Kcng3 | ENSMUSG00000045053 |
| rattus_norvegicus | Kcng3 | ENSRNOG00000004535 |
Paralogs (31): KCNG1 (ENSG00000026559), KCNQ1 (ENSG00000053918), KCNQ2 (ENSG00000075043), KCND1 (ENSG00000102057), KCNA7 (ENSG00000104848), KCNA1 (ENSG00000111262), KCNC4 (ENSG00000116396), KCNQ4 (ENSG00000117013), KCNS1 (ENSG00000124134), KCNC1 (ENSG00000129159), KCNA5 (ENSG00000130037), KCNC3 (ENSG00000131398), KCNA10 (ENSG00000143105), KCNA6 (ENSG00000151079), KCNS2 (ENSG00000156486), KCNB1 (ENSG00000158445), KCNF1 (ENSG00000162975), KCNV1 (ENSG00000164794), KCNC2 (ENSG00000166006), KCNV2 (ENSG00000168263), KCNG4 (ENSG00000168418), KCNS3 (ENSG00000170745), KCND3 (ENSG00000171385), KCNA3 (ENSG00000177272), KCNA2 (ENSG00000177301), KCNG2 (ENSG00000178342), KCNA4 (ENSG00000182255), KCNB2 (ENSG00000182674), KCNQ3 (ENSG00000184156), KCND2 (ENSG00000184408), KCNQ5 (ENSG00000185760)
Protein
Protein identifiers
Voltage-gated potassium channel regulatory subunit KCNG3 — Q8TAE7 (reviewed: Q8TAE7)
Alternative names: Potassium voltage-gated channel subfamily G member 3, Voltage-gated potassium channel subunit Kv10.1, Voltage-gated potassium channel subunit Kv6.3
All UniProt accessions (1): Q8TAE7
UniProt curated annotations — full annotation on UniProt →
Function. Regulatory subunit of the voltage-gated potassium (Kv) channel which, when coassembled with KCNB1, modulates the kinetics parameters of the heterotetrameric channel namely the inactivation and deactivation rate. Potassium channel subunit that does not form functional channels by itself. Reduces the deactivation rate. Moderately accelerates activation.
Subunit / interactions. Heterotetramer with KCNB1. Does not form homomultimers.
Subcellular location. Cell membrane. Cytoplasm.
Tissue specificity. Expressed in the brain, liver, testis, small intestine, colon, thymus and adrenal gland.
Domain organisation. The transmembrane segment S4 functions as a voltage-sensor and is characterized by a series of positively charged amino acids at every third position. Channel opening and closing is effected by a conformation change that affects the position and orientation of the voltage-sensor paddle formed by S3 and S4 within the membrane. A transmembrane electric field that is positive inside would push the positively charged S4 segment outwards, thereby opening the pore, while a field that is negative inside would pull the S4 segment inwards and close the pore. Changes in the position and orientation of S4 are then transmitted to the activation gate formed by the inner helix bundle via the S4-S5 linker region.
Similarity. Belongs to the potassium channel family. G (TC 1.A.1.2) subfamily. Kv6.3/KCNG3 sub-subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8TAE7-1 | 1, Kv10.1b | yes |
| Q8TAE7-2 | 2, Kv10.1a |
RefSeq proteins (2): NP_579875, NP_758847 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000210 | BTB/POZ_dom | Domain |
| IPR003131 | T1-type_BTB | Domain |
| IPR003968 | K_chnl_volt-dep_Kv | Family |
| IPR003971 | K_chnl_volt-dep_Kv5/Kv9 | Family |
| IPR005821 | Ion_trans_dom | Domain |
| IPR011333 | SKP1/BTB/POZ_sf | Homologous_superfamily |
| IPR027359 | Volt_channel_dom_sf | Homologous_superfamily |
| IPR028325 | VG_K_chnl | Family |
Pfam: PF00520, PF02214
UniProt features (19 total): topological domain 8, transmembrane region 6, intramembrane region 2, chain 1, short sequence motif 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8TAE7-F1 | 80.07 | 0.32 |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-1296072 | Voltage gated Potassium channels |
| R-HSA-112316 | Neuronal System |
| R-HSA-1296071 | Potassium Channels |
MSigDB gene sets: 102 (showing top):
GOBP_POTASSIUM_ION_TRANSPORT, REACTOME_VOLTAGE_GATED_POTASSIUM_CHANNELS, REACTOME_POTASSIUM_CHANNELS, GOBP_MONOATOMIC_CATION_TRANSPORT, HFH4_01, AACTTT_UNKNOWN, TGGNNNNNNKCCAR_UNKNOWN, GOBP_PROTEIN_HOMOOLIGOMERIZATION, GOBP_REGULATION_OF_TRANSPORT, GOBP_REGULATION_OF_MONOATOMIC_ION_TRANSPORT, GOBP_TRANSMEMBRANE_TRANSPORT, GOBP_REGULATION_OF_POTASSIUM_ION_TRANSPORT, GOBP_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, GOCC_POTASSIUM_CHANNEL_COMPLEX, GOBP_REGULATION_OF_MEMBRANE_POTENTIAL
GO Biological Process (9): action potential (GO:0001508), regulation of potassium ion transport (GO:0043266), protein homooligomerization (GO:0051260), potassium ion transmembrane transport (GO:0071805), regulation of potassium ion transmembrane transport (GO:1901379), monoatomic ion transport (GO:0006811), potassium ion transport (GO:0006813), monoatomic ion transmembrane transport (GO:0034220), transmembrane transport (GO:0055085)
GO Molecular Function (5): voltage-gated potassium channel activity (GO:0005249), potassium channel regulator activity (GO:0015459), monoatomic ion channel activity (GO:0005216), potassium channel activity (GO:0005267), protein binding (GO:0005515)
GO Cellular Component (6): endoplasmic reticulum (GO:0005783), plasma membrane (GO:0005886), voltage-gated potassium channel complex (GO:0008076), membrane (GO:0016020), cytoplasm (GO:0005737), monoatomic ion channel complex (GO:0034702)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Potassium Channels | 1 |
| Neuronal System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| potassium ion transport | 2 |
| transport | 2 |
| potassium channel activity | 2 |
| cellular anatomical structure | 2 |
| regulation of membrane potential | 1 |
| regulation of metal ion transport | 1 |
| protein complex oligomerization | 1 |
| monoatomic cation transmembrane transport | 1 |
| regulation of potassium ion transport | 1 |
| potassium ion transmembrane transport | 1 |
| regulation of monoatomic cation transmembrane transport | 1 |
| metal ion transport | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| cellular process | 1 |
| voltage-gated monoatomic cation channel activity | 1 |
| ion channel regulator activity | 1 |
| monoatomic ion transmembrane transporter activity | 1 |
| channel activity | 1 |
| monoatomic cation channel activity | 1 |
| potassium ion transmembrane transporter activity | 1 |
| binding | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| potassium channel complex | 1 |
| plasma membrane protein complex | 1 |
| intracellular anatomical structure | 1 |
| transmembrane transporter complex | 1 |
Protein interactions and networks
STRING
1432 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KCNG3 | PRR35 | P0CG20 | 582 |
| KCNG3 | PKDCC | Q504Y2 | 561 |
| KCNG3 | KBTBD12 | Q3ZCT8 | 529 |
| KCNG3 | CACNA1S | Q13698 | 508 |
| KCNG3 | RRP36 | Q96EU6 | 499 |
| KCNG3 | KLHDC8B | Q8IXV7 | 477 |
| KCNG3 | SPMIP7 | A4D263 | 475 |
| KCNG3 | TOGARAM1 | Q9Y4F4 | 474 |
| KCNG3 | KCNK12 | Q9HB15 | 472 |
| KCNG3 | TRAPPC6B | Q86SZ2 | 467 |
| KCNG3 | IHO1 | Q8IYA8 | 459 |
| KCNG3 | KCNN1 | Q92952 | 459 |
| KCNG3 | SIPA1L2 | Q9P2F8 | 450 |
| KCNG3 | VWC2 | Q2TAL6 | 448 |
| KCNG3 | LRRTM1 | Q86UE6 | 447 |
IntAct
4 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MYC | psi-mi:“MI:0914”(association) | 0.350 | |
| ATG16L1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC27A6 | NBAS | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (16): KCNG3 (Affinity Capture-RNA), KCNG3 (Affinity Capture-RNA), KCNG3 (Two-hybrid), KCNG3 (Two-hybrid), KCNG3 (Two-hybrid), KCNG3 (Affinity Capture-Western), KCNG3 (Affinity Capture-RNA), KCNV1 (Negative Genetic), KCNG3 (Affinity Capture-MS), KCNG3 (Affinity Capture-RNA), KCNB1 (Affinity Capture-Western), KCNG3 (Two-hybrid), KCNG3 (Two-hybrid), KCNG3 (FRET), KCNB2 (Two-hybrid)
ESM2 similar proteins: A2BDX4, A4K2T1, A4K2Y2, D4AD53, O15554, O73606, O88454, O89109, P15388, P17971, P17972, P35739, P48547, P59053, P59994, P59995, P97557, Q03719, Q0P583, Q17ST2, Q52PG9, Q5RC10, Q60565, Q63881, Q6IVV8, Q6PIU1, Q7TN37, Q80XM3, Q8BZN2, Q8CFS6, Q8HYZ1, Q8IV77, Q8R1P5, Q8R523, Q8TAE7, Q8TD43, Q8TDN1, Q8TDN2, Q96RP8, Q9ERS0
Diamond homologs: A2BDX4, A4K2M4, A4K2N8, A4K2P6, A4K2Q6, A4K2R3, A4K2S2, A4K2T1, A4K2V2, A4K2W6, A4K2X4, A4K2Y2, A6H8H5, D4AD53, D4ADX7, G5EFC3, O18868, O35173, O35174, O73606, O88758, O88759, P10499, P15384, P15385, P15387, P15388, P16388, P16390, P17970, P17971, P17972, P22001, P22459, P22739, P25122, P48547, P59053, P59994, P59995
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
51 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 49 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
513 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:42444575:TTATC:T | acceptor_gain | 1.0000 |
| 2:42444576:TATC:T | acceptor_gain | 1.0000 |
| 2:42444577:ATC:A | acceptor_gain | 1.0000 |
| 2:42444578:TC:T | acceptor_gain | 1.0000 |
| 2:42444578:TCCTG:T | acceptor_loss | 1.0000 |
| 2:42444579:CC:C | acceptor_gain | 1.0000 |
| 2:42444580:C:CC | acceptor_gain | 1.0000 |
| 2:42444580:C:G | acceptor_loss | 1.0000 |
| 2:42444584:C:CT | acceptor_gain | 1.0000 |
| 2:42444585:A:T | acceptor_gain | 1.0000 |
| 2:42444592:C:CT | acceptor_gain | 0.9900 |
| 2:42491747:C:CA | donor_gain | 0.9900 |
| 2:42444593:A:T | acceptor_gain | 0.9800 |
| 2:42444580:C:T | acceptor_gain | 0.9700 |
| 2:42492868:ACC:A | donor_loss | 0.9700 |
| 2:42492869:CCTGC:C | donor_loss | 0.9700 |
| 2:42491744:ACTC:A | donor_gain | 0.9400 |
| 2:42491745:CTCC:C | donor_gain | 0.9400 |
| 2:42485970:A:AC | donor_gain | 0.9200 |
| 2:42485971:C:CC | donor_gain | 0.9200 |
| 2:42444576:TATCC:T | acceptor_gain | 0.9100 |
| 2:42491746:TCCC:T | donor_gain | 0.8800 |
| 2:42492869:CCTG:C | donor_gain | 0.8800 |
| 2:42492872:G:A | donor_gain | 0.8800 |
| 2:42485966:G:A | donor_gain | 0.8700 |
| 2:42485972:T:C | donor_gain | 0.8600 |
| 2:42444577:ATCC:A | acceptor_gain | 0.8500 |
| 2:42444577:ATCCT:A | acceptor_gain | 0.8500 |
| 2:42444578:TCCT:T | acceptor_gain | 0.8500 |
| 2:42487680:CAAT:C | donor_gain | 0.8500 |
AlphaMissense
2847 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:42444009:A:C | F412L | 1.000 |
| 2:42444009:A:T | F412L | 1.000 |
| 2:42444011:A:G | F412L | 1.000 |
| 2:42444149:A:G | W366R | 1.000 |
| 2:42444149:A:T | W366R | 1.000 |
| 2:42444498:A:C | F249L | 1.000 |
| 2:42444498:A:T | F249L | 1.000 |
| 2:42444500:A:G | F249L | 1.000 |
| 2:42444529:C:A | R239M | 1.000 |
| 2:42444549:G:C | F232L | 1.000 |
| 2:42444549:G:T | F232L | 1.000 |
| 2:42444551:A:G | F232L | 1.000 |
| 2:42493199:C:A | W101C | 1.000 |
| 2:42493199:C:G | W101C | 1.000 |
| 2:42493201:A:G | W101R | 1.000 |
| 2:42493201:A:T | W101R | 1.000 |
| 2:42493314:A:G | F63S | 1.000 |
| 2:42493316:G:C | F62L | 1.000 |
| 2:42493316:G:T | F62L | 1.000 |
| 2:42493318:A:G | F62L | 1.000 |
| 2:42493350:C:T | C51Y | 1.000 |
| 2:42444010:A:C | F412C | 0.999 |
| 2:42444034:G:C | P404R | 0.999 |
| 2:42444034:G:T | P404H | 0.999 |
| 2:42444055:C:T | G397E | 0.999 |
| 2:42444056:C:G | G397R | 0.999 |
| 2:42444056:C:T | G397R | 0.999 |
| 2:42444057:A:C | S396R | 0.999 |
| 2:42444057:A:T | S396R | 0.999 |
| 2:42444059:T:G | S396R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000053224 (2:42406841 AAAAG>A), RS1000078288 (2:42463776 A>G), RS1000085021 (2:42437780 A>G), RS1000115702 (2:42451472 C>A), RS1000148023 (2:42422131 T>A,C), RS1000149556 (2:42459691 T>C), RS1000207782 (2:42416653 T>C), RS1000222898 (2:42459120 C>A,T), RS1000248141 (2:42491897 G>A), RS1000254782 (2:42411499 G>C,T), RS1000268914 (2:42486976 G>C), RS1000278849 (2:42487119 T>G), RS1000320907 (2:42416950 T>C,G), RS1000321284 (2:42416900 T>C), RS1000335608 (2:42448653 T>C)
Disease associations
OMIM: gene MIM:606767 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
11 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002783_308 | Body mass index | 4.000000e-07 |
| GCST002783_613 | Body mass index | 8.000000e-07 |
| GCST003390_8 | Thrombosis | 2.000000e-07 |
| GCST006190_7 | Diastolic blood pressure x smoking status (ever vs never) interaction (2df test) | 8.000000e-11 |
| GCST006190_76 | Diastolic blood pressure x smoking status (ever vs never) interaction (2df test) | 3.000000e-13 |
| GCST006192_62 | Systolic blood pressure x smoking status (ever vs never) interaction (2df test) | 5.000000e-11 |
| GCST006192_78 | Systolic blood pressure x smoking status (ever vs never) interaction (2df test) | 1.000000e-08 |
| GCST006193_40 | Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 1.000000e-11 |
| GCST006193_78 | Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 1.000000e-14 |
| GCST006195_30 | Systolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 5.000000e-09 |
| GCST006195_40 | Systolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 9.000000e-12 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0003907 | deep vein thrombosis |
| EFO:0006336 | diastolic blood pressure |
| EFO:0006527 | smoking status measurement |
| EFO:0006335 | systolic blood pressure |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2362996 (PROTEIN FAMILY)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: vgic — Voltage-gated potassium channels (Kv)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.82 | Ki | 0.15 | nM | CHEMBL5722941 |
| 9.74 | IC50 | 0.18 | nM | CHEMBL5722941 |
PubChem BioAssay actives
2 with measured affinity, of 34 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 3-[(1R,2aS,4S,5aS,8aS,10S,11aR,14aS,16S,17aS,19S,20aS,22S,23aS,25S,26aS,28S,29aS,31R,32aS,35aS,36R,38aS,39S,41aS,42S,44aS,45S,48R,50aS,51S,53aS,54S,56aS,57S,59aS,60S,63S,66S,69S,72S,75S,78S,87R,93S,96S,99S)-17a,20a,23a,53a,63-pentakis(4-aminobutyl)-31-[[(2S)-2-[[(2S)-6-amino-2-[[(2S)-5-carbamimidamido-2-[[(2S)-5-carbamimidamido-2-[[(2S)-1-[(2S)-5-oxopyrrolidine-2-carbonyl]pyrrolidine-2-carbonyl]amino]pentanoyl]amino]pentanoyl]amino]hexanoyl]amino]-4-methylpentanoyl]amino]-16,29a,72,78-tetrakis(2-amino-2-oxoethyl)-14a,26a-bis(3-amino-3-oxopropyl)-2a,38a,66-tribenzyl-28,50a,57-tris[(2S)-butan-2-yl]-4,5a,19,42,45,69-hexakis(3-carbamimidamidopropyl)-51,54-bis(2-carboxyethyl)-56a,99-bis(carboxymethyl)-36-[[(2S,3S)-1-(carboxymethylamino)-3-methyl-1-oxopentan-2-yl]carbamoyl]-39,60-bis[(1R)-1-hydroxyethyl]-75,93-bis(hydroxymethyl)-32a,35a,59a-tris[(4-hydroxyphenyl)methyl]-22-(1H-imidazol-4-ylmethyl)-96-(1H-indol-3-ylmethyl)-41a-methyl-25-(2-methylpropyl)-1a,3,4a,6,7a,9,10a,13a,15,16a,18,19a,21,22a,24,25a,27,28a,30,31a,34a,37a,38,40a,41,43a,44,47,49a,50,52a,53,55a,56,58a,59,61a,62,65,68,71,74,77,80,83,86,89,92,95,98-pentacontaoxo-33,34,63a,64a,67a,68a-hexathia-a,2,3a,5,6a,8,9a,12a,14,15a,17,18a,20,21a,23,24a,26,27a,29,30a,33a,36a,37,39a,40,42a,43,46,48a,49,51a,52,54a,55,57a,58,60a,61,64,67,70,73,76,79,82,85,88,91,94,97-pentacontazapentacyclo[85.74.4.448,111.010,14.0144,148]nonahexacontahectan-8a-yl]propanoic acid | 2198828: Binding affinity to KV channel (unknown origin) assessed as inhibition constant | ki | 0.0001 | uM |
CTD chemical–gene interactions
32 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects cotreatment, decreases expression, affects expression | 6 |
| trichostatin A | decreases expression, affects cotreatment | 3 |
| Benzo(a)pyrene | decreases methylation, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| terbufos | increases methylation | 1 |
| sodium arsenite | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| nickel sulfate | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | decreases reaction, increases expression | 1 |
| pentanal | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| PCI 5002 | affects cotreatment, increases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Leflunomide | increases expression | 1 |
| Aldehydes | increases expression | 1 |
| Carbamazepine | affects expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Fonofos | increases methylation | 1 |
| Lipopolysaccharides | decreases reaction, increases expression | 1 |
| Parathion | increases methylation | 1 |
| Silicon Dioxide | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
ChEMBL screening assays
21 unique, capped per target: 20 binding, 1 toxicity
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1787442 | Binding | Inhibition of human recombinant Kv channel at 10 uM by radioligand binding assay | Structure-activity relationships of pyrrole based S-nitrosoglutathione reductase inhibitors: pyrrole regioisomers and propionic acid replacement. — Bioorg Med Chem Lett |
| CHEMBL5522525 | Toxicity | Inhibition of human K+ channel by automated electrophysiology | Discovery of Clinical Candidate AZD5462, a Selective Oral Allosteric RXFP1 Agonist for Treatment of Heart Failure. — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): pulmonary embolism, stroke disorder, venous thromboembolism