KCNIP1-AS1

Summary

KCNIP1-AS1 (KCNIP1 antisense RNA 1, HGNC:40710) is a long non-coding RNA gene on chromosome 5q35.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40710
Approved symbol	KCNIP1-AS1
Name	KCNIP1 antisense RNA 1
Location	5q35.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000253591
Ensembl biotype	lncRNA
Entrez	105377716
RNAcentral	URS0000A770C2 — lncRNA, 1604 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000523591, ENST00000662627

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000523591 — 6 exons

Exon	Start	End
ENSE00002092803	170639158	170639546
ENSE00002095935	170678407	170678562
ENSE00002104672	170642055	170642145
ENSE00002109365	170680510	170680826
ENSE00002119362	170678928	170679260
ENSE00002119539	170681153	170681437

Expression profiles

Bgee: expression breadth broad, 67 present calls, max score 79.46.

Top tissues by expression

67 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.46	silver quality
cortical plate	UBERON:0005343	58.87	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	51.96	gold quality
heart left ventricle	UBERON:0002084	51.55	gold quality
endometrium	UBERON:0001295	51.49	gold quality
heart	UBERON:0000948	50.91	gold quality
apex of heart	UBERON:0002098	50.42	gold quality
prefrontal cortex	UBERON:0000451	50.16	silver quality
myometrium	UBERON:0001296	49.47	silver quality
left testis	UBERON:0004533	48.89	gold quality
lymph node	UBERON:0000029	48.84	silver quality
testis	UBERON:0000473	48.47	gold quality
stomach	UBERON:0000945	48.19	silver quality
right testis	UBERON:0004534	48.10	gold quality
right hemisphere of cerebellum	UBERON:0014890	48.10	gold quality
thyroid gland	UBERON:0002046	47.66	silver quality
esophagus	UBERON:0001043	46.70	silver quality
islet of Langerhans	UBERON:0000006	46.59	silver quality
corpus callosum	UBERON:0002336	46.53	silver quality
saliva-secreting gland	UBERON:0001044	46.38	silver quality
blood	UBERON:0000178	46.19	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	46.16	gold quality
pancreas	UBERON:0001264	46.10	silver quality
multicellular organism	UBERON:0000468	45.78	gold quality
intestine	UBERON:0000160	44.13	silver quality
body of uterus	UBERON:0009853	44.04	silver quality
adrenal gland	UBERON:0002369	43.55	silver quality
placenta	UBERON:0001987	43.01	silver quality
gall bladder	UBERON:0002110	43.01	silver quality
body of pancreas	UBERON:0001150	42.76	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.