KCNIP2-AS1

Summary

KCNIP2-AS1 (KCNIP2 antisense RNA 1, HGNC:48680) is a long non-coding RNA gene on chromosome 10q24.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48680
Approved symbol	KCNIP2-AS1
Name	KCNIP2 antisense RNA 1
Location	10q24.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226009
Ensembl biotype	lncRNA
Entrez	100289509
RNAcentral	URS000075ABA8 — lncRNA, 976 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000412353, ENST00000832750, ENST00000832751, ENST00000832752, ENST00000832753

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412353 — 3 exons

Exon	Start	End
ENSE00001758641	101827860	101827939
ENSE00004248534	101818759	101819248
ENSE00004248536	101828181	101828892

Expression profiles

Bgee: expression breadth ubiquitous, 170 present calls, max score 92.21.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1528 / max 42.4020, expressed in 44 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
106672	0.0971	32
106673	0.0491	4
205972	0.0066	3

Top tissues by expression

215 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
kidney epithelium	UBERON:0004819	92.21	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.94	gold quality
superficial temporal artery	UBERON:0001614	91.25	silver quality
left ventricle myocardium	UBERON:0006566	90.47	silver quality
nasal cavity epithelium	UBERON:0005384	89.16	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	86.57	silver quality
upper arm skin	UBERON:0004263	86.45	gold quality
left testis	UBERON:0004533	85.78	gold quality
right testis	UBERON:0004534	85.57	gold quality
gingival epithelium	UBERON:0001949	85.15	silver quality
vena cava	UBERON:0004087	84.09	silver quality
cardia of stomach	UBERON:0001162	83.78	gold quality
testis	UBERON:0000473	83.56	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	83.25	silver quality
cerebellar vermis	UBERON:0004720	82.55	silver quality
epithelial cell of pancreas	CL:0000083	82.13	silver quality
body of tongue	UBERON:0011876	81.75	gold quality
gingiva	UBERON:0001828	81.14	silver quality
tongue	UBERON:0001723	80.43	gold quality
pericardium	UBERON:0002407	80.22	silver quality
layer of synovial tissue	UBERON:0007616	80.06	silver quality
superior surface of tongue	UBERON:0007371	79.65	silver quality
thymus	UBERON:0002370	79.64	silver quality
nipple	UBERON:0002030	79.61	gold quality
lateral globus pallidus	UBERON:0002476	79.58	gold quality
substantia nigra pars reticulata	UBERON:0001966	79.46	gold quality
saphenous vein	UBERON:0007318	79.46	silver quality
lateral nuclear group of thalamus	UBERON:0002736	79.39	gold quality
pons	UBERON:0000988	79.25	silver quality
pylorus	UBERON:0001166	79.19	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.86

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.