KCNIP4-AS3

Summary

KCNIP4-AS3 (KCNIP4 antisense RNA 3, HGNC:41254) is a long non-coding RNA gene on chromosome 4p15.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41254
Approved symbol	KCNIP4-AS3
Name	KCNIP4 antisense RNA 3
Location	4p15.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250243
Ensembl biotype	lncRNA
Entrez	143433684

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000515680, ENST00000659675

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000515680 — 3 exons

Exon	Start	End
ENSE00002022191	21315276	21315340
ENSE00002030544	21304542	21304613
ENSE00002053250	21316282	21316485

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 84.26.

Top tissues by expression

100 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.26	silver quality
sural nerve	UBERON:0015488	83.74	gold quality
corpus callosum	UBERON:0002336	81.04	gold quality
primary visual cortex	UBERON:0002436	64.08	gold quality
ganglionic eminence	UBERON:0004023	62.90	gold quality
superior frontal gyrus	UBERON:0002661	60.28	gold quality
left testis	UBERON:0004533	59.52	gold quality
testis	UBERON:0000473	59.49	gold quality
monocyte	CL:0000576	58.74	gold quality
kidney	UBERON:0002113	57.28	gold quality
prefrontal cortex	UBERON:0000451	57.20	gold quality
right testis	UBERON:0004534	57.18	gold quality
adrenal tissue	UBERON:0018303	56.65	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	56.38	gold quality
cerebellar cortex	UBERON:0002129	55.43	gold quality
cerebellum	UBERON:0002037	55.42	gold quality
right hemisphere of cerebellum	UBERON:0014890	55.14	gold quality
cerebellar hemisphere	UBERON:0002245	55.02	gold quality
blood	UBERON:0000178	54.08	gold quality
heart left ventricle	UBERON:0002084	53.92	gold quality
stomach	UBERON:0000945	53.41	gold quality
frontal cortex	UBERON:0001870	52.92	gold quality
endometrium	UBERON:0001295	52.87	gold quality
body of pancreas	UBERON:0001150	52.81	gold quality
heart	UBERON:0000948	52.33	gold quality
gastrocnemius	UBERON:0001388	51.94	gold quality
adult mammalian kidney	UBERON:0000082	51.73	gold quality
Brodmann (1909) area 9	UBERON:0013540	51.29	gold quality
endocervix	UBERON:0000458	51.08	gold quality
tibial artery	UBERON:0007610	50.83	gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-HCAD-25	yes	1005.76
E-HCAD-35	yes	193.46
E-ANND-3	no	1.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.