KCNIP4-DT

Summary

KCNIP4-DT (KCNIP4 divergent transcript, HGNC:58742) is a long non-coding RNA gene on chromosome 4p15.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58742
Approved symbol	KCNIP4-DT
Name	KCNIP4 divergent transcript
Location	4p15.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250039
Ensembl biotype	lncRNA
Entrez	143433688

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000510705, ENST00000665391, ENST00000665861

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000510705 — 4 exons

Exon	Start	End
ENSE00002051099	22329316	22330330
ENSE00002052800	22101494	22101630
ENSE00002056735	21949015	21949459
ENSE00002062624	22059084	22059360

Expression profiles

Bgee: expression breadth ubiquitous, 101 present calls, max score 75.07.

Top tissues by expression

101 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.07	gold quality
testis	UBERON:0000473	67.87	gold quality
sural nerve	UBERON:0015488	63.93	silver quality
ventricular zone	UBERON:0003053	60.62	gold quality
endometrium	UBERON:0001295	58.40	gold quality
putamen	UBERON:0001874	57.79	gold quality
ganglionic eminence	UBERON:0004023	57.55	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.05	gold quality
skeletal muscle tissue	UBERON:0001134	54.58	gold quality
rectum	UBERON:0001052	52.64	gold quality
prefrontal cortex	UBERON:0000451	51.82	gold quality
urinary bladder	UBERON:0001255	50.95	silver quality
blood	UBERON:0000178	50.83	gold quality
liver	UBERON:0002107	50.03	silver quality
caudate nucleus	UBERON:0001873	49.72	gold quality
monocyte	CL:0000576	49.47	silver quality
right lobe of liver	UBERON:0001114	49.46	silver quality
islet of Langerhans	UBERON:0000006	48.70	gold quality
transverse colon	UBERON:0001157	48.70	gold quality
nucleus accumbens	UBERON:0001882	48.39	gold quality
cortex of kidney	UBERON:0001225	48.31	silver quality
mucosa of transverse colon	UBERON:0004991	47.66	gold quality
pancreas	UBERON:0001264	47.63	silver quality
muscle of leg	UBERON:0001383	47.54	silver quality
body of pancreas	UBERON:0001150	47.33	silver quality
vermiform appendix	UBERON:0001154	47.00	silver quality
brain	UBERON:0000955	46.89	gold quality
gastrocnemius	UBERON:0001388	46.87	silver quality
colon	UBERON:0001155	46.38	gold quality
myometrium	UBERON:0001296	46.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.