KCNIP4-IT1

Summary

KCNIP4-IT1 (KCNIP4 intronic transcript 1, HGNC:29895) is a long non-coding RNA gene on chromosome 4p15.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:29895
Approved symbol	KCNIP4-IT1
Name	KCNIP4 intronic transcript 1
Location	4p15.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	UM9-5
Ensembl gene	ENSG00000280650
Ensembl biotype	lncRNA
Entrez	359822
RNAcentral	URS000075DEA0 — lncRNA, 9848 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000627566

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000627566 — 1 exons

Exon	Start	End
ENSE00003769879	21843341	21853188

Expression profiles

Bgee: expression breadth broad, 33 present calls, max score 68.70.

Top tissues by expression

33 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
corpus callosum	UBERON:0002336	68.70	gold quality
uterine cervix	UBERON:0000002	64.23	silver quality
myometrium	UBERON:0001296	60.43	silver quality
primary visual cortex	UBERON:0002436	55.61	gold quality
colon	UBERON:0001155	53.79	gold quality
superior frontal gyrus	UBERON:0002661	52.36	gold quality
intestine	UBERON:0000160	51.68	gold quality
endometrium	UBERON:0001295	48.30	gold quality
ovary	UBERON:0000992	47.91	silver quality
prefrontal cortex	UBERON:0000451	47.77	gold quality
kidney	UBERON:0002113	46.23	silver quality
cerebellar cortex	UBERON:0002129	45.61	gold quality
multicellular organism	UBERON:0000468	45.50	gold quality
stomach	UBERON:0000945	45.41	silver quality
blood	UBERON:0000178	45.03	silver quality
cerebellar hemisphere	UBERON:0002245	44.82	silver quality
brain	UBERON:0000955	44.76	gold quality
Brodmann (1909) area 9	UBERON:0013540	44.02	silver quality
adrenal tissue	UBERON:0018303	43.38	silver quality
frontal cortex	UBERON:0001870	43.24	gold quality
right hemisphere of cerebellum	UBERON:0014890	42.71	silver quality
nucleus accumbens	UBERON:0001882	41.33	silver quality
heart	UBERON:0000948	41.13	silver quality
caudate nucleus	UBERON:0001873	40.71	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	40.49	silver quality
putamen	UBERON:0001874	39.10	silver quality
Ammon’s horn	UBERON:0001954	39.02	silver quality
right frontal lobe	UBERON:0002810	38.17	silver quality
anterior cingulate cortex	UBERON:0009835	38.01	silver quality
body of uterus	UBERON:0009853	36.61	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.71

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.