KCNMA1-AS3

Summary

KCNMA1-AS3 (KCNMA1 antisense RNA 3, HGNC:51215) is a long non-coding RNA gene on chromosome 10q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51215
Approved symbol	KCNMA1-AS3
Name	KCNMA1 antisense RNA 3
Location	10q22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225652
Ensembl biotype	lncRNA
Entrez	101929286
RNAcentral	URS00007E4AA2 — lncRNA, 1234 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000418515, ENST00000675005, ENST00000675923

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418515 — 5 exons

Exon	Start	End
ENSE00001614990	77354404	77354619
ENSE00001658763	77376429	77376613
ENSE00001690717	77372847	77372947
ENSE00001749037	77355169	77355228
ENSE00001787755	77373697	77373835

Expression profiles

Bgee: expression breadth ubiquitous, 103 present calls, max score 94.22.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0153 / max 12.7773, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
105659	0.0153	3

Top tissues by expression

103 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.22	gold quality
colonic epithelium	UBERON:0000397	83.00	gold quality
skeletal muscle tissue	UBERON:0001134	80.77	gold quality
calcaneal tendon	UBERON:0003701	76.95	gold quality
left testis	UBERON:0004533	76.65	gold quality
testis	UBERON:0000473	76.29	gold quality
right testis	UBERON:0004534	75.97	gold quality
tonsil	UBERON:0002372	71.45	gold quality
bone marrow cell	CL:0002092	69.68	gold quality
corpus callosum	UBERON:0002336	68.75	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.68	gold quality
adrenal tissue	UBERON:0018303	65.14	gold quality
ventricular zone	UBERON:0003053	63.39	gold quality
urinary bladder	UBERON:0001255	62.50	gold quality
primary visual cortex	UBERON:0002436	59.90	gold quality
lymph node	UBERON:0000029	57.78	gold quality
liver	UBERON:0002107	57.40	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	56.51	gold quality
adrenal gland	UBERON:0002369	55.19	gold quality
smooth muscle tissue	UBERON:0001135	53.68	gold quality
blood	UBERON:0000178	53.50	gold quality
muscle of leg	UBERON:0001383	53.12	gold quality
monocyte	CL:0000576	52.62	gold quality
uterine cervix	UBERON:0000002	52.02	silver quality
right hemisphere of cerebellum	UBERON:0014890	51.28	gold quality
gall bladder	UBERON:0002110	51.14	gold quality
prefrontal cortex	UBERON:0000451	50.62	gold quality
multicellular organism	UBERON:0000468	50.55	gold quality
superior frontal gyrus	UBERON:0002661	50.18	gold quality
myometrium	UBERON:0001296	50.17	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.