KCNN2
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Also known as KCa2.2hSK2
Summary
KCNN2 (potassium calcium-activated channel subfamily N member 2, HGNC:6291) is a protein-coding gene on chromosome 5q22.3, encoding Small conductance calcium-activated potassium channel protein 2 (Q9H2S1). Small conductance calcium-activated potassium channel that mediates the voltage-independent transmembrane transfer of potassium across the cell membrane through a constitutive interaction with calmodulin which binds the intracellular calcium allowing its opening.
Action potentials in vertebrate neurons are followed by an afterhyperpolarization (AHP) that may persist for several seconds and may have profound consequences for the firing pattern of the neuron. Each component of the AHP is kinetically distinct and is mediated by different calcium-activated potassium channels. The protein encoded by this gene is activated before membrane hyperpolarization and is thought to regulate neuronal excitability by contributing to the slow component of synaptic AHP. This gene is a member of the KCNN family of potassium channel genes. The encoded protein is an integral membrane protein that forms a voltage-independent calcium-activated channel with three other calmodulin-binding subunits. Alternate splicing of this gene results in multiple transcript variants.
Source: NCBI Gene 3781 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder with or without variable movement or behavioral abnormalities (Strong, GenCC)
- GWAS associations: 19
- Clinical variants (ClinVar): 209 total — 9 pathogenic, 9 likely-pathogenic
- Phenotypes (HPO): 42
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_021614
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6291 |
| Approved symbol | KCNN2 |
| Name | potassium calcium-activated channel subfamily N member 2 |
| Location | 5q22.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KCa2.2, hSK2 |
| Ensembl gene | ENSG00000080709 |
| Ensembl biotype | protein_coding |
| OMIM | 605879 |
| Entrez | 3781 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 4 protein_coding, 2 nonsense_mediated_decay, 2 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000503706, ENST00000505491, ENST00000506812, ENST00000507750, ENST00000512097, ENST00000512927, ENST00000631899, ENST00000632892, ENST00000673685
RefSeq mRNA: 3 — MANE Select: NM_021614
NM_001372233, NM_021614, NM_170775
CCDS: CCDS4114, CCDS43352, CCDS93760
Canonical transcript exons
ENST00000673685 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002081251 | 114495895 | 114496496 |
| ENSE00002244471 | 114404438 | 114404856 |
| ENSE00003583331 | 114487050 | 114487177 |
| ENSE00003615502 | 114493403 | 114493472 |
| ENSE00003682832 | 114463049 | 114463190 |
| ENSE00003687001 | 114473054 | 114473164 |
| ENSE00003691261 | 114363906 | 114364001 |
| ENSE00003896520 | 114362070 | 114363261 |
Expression profiles
Bgee: expression breadth ubiquitous, 213 present calls, max score 94.98.
FANTOM5 (CAGE): breadth broad, TPM avg 3.7998 / max 99.6345, expressed in 524 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 58031 | 2.2162 | 439 |
| 58033 | 0.5464 | 251 |
| 58032 | 0.3580 | 190 |
| 58034 | 0.2851 | 163 |
| 58030 | 0.0915 | 47 |
| 58025 | 0.0790 | 40 |
| 58027 | 0.0770 | 47 |
| 58026 | 0.0751 | 38 |
| 58038 | 0.0716 | 26 |
Top tissues by expression
285 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 94.98 | gold quality |
| oocyte | CL:0000023 | 94.00 | gold quality |
| right adrenal gland | UBERON:0001233 | 92.04 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 90.81 | gold quality |
| left adrenal gland | UBERON:0001234 | 90.74 | gold quality |
| adrenal cortex | UBERON:0001235 | 90.08 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 89.91 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 89.55 | gold quality |
| adrenal gland | UBERON:0002369 | 88.84 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 88.39 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 88.06 | gold quality |
| cortical plate | UBERON:0005343 | 87.05 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.72 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 84.26 | gold quality |
| right lobe of liver | UBERON:0001114 | 83.53 | gold quality |
| Ammon’s horn | UBERON:0001954 | 83.28 | gold quality |
| liver | UBERON:0002107 | 82.20 | gold quality |
| cerebellar vermis | UBERON:0004720 | 81.89 | silver quality |
| heart right ventricle | UBERON:0002080 | 81.39 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 81.24 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 81.13 | gold quality |
| spinal cord | UBERON:0002240 | 80.65 | gold quality |
| cerebral cortex | UBERON:0000956 | 80.35 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 80.35 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 80.33 | gold quality |
| prefrontal cortex | UBERON:0000451 | 80.09 | gold quality |
| cerebellar cortex | UBERON:0002129 | 80.08 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 80.01 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 80.01 | gold quality |
| cerebellum | UBERON:0002037 | 79.98 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.76 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ERG, NR3C1, NR3C2
miRNA regulators (miRDB)
26 targeting KCNN2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-5582-3P | 99.86 | 72.48 | 4221 |
| HSA-MIR-4766-5P | 99.75 | 69.23 | 2662 |
| HSA-MIR-4255 | 99.72 | 67.70 | 1541 |
| HSA-MIR-519A-3P | 99.67 | 71.67 | 1868 |
| HSA-MIR-519B-3P | 99.67 | 71.67 | 1868 |
| HSA-MIR-519C-3P | 99.67 | 71.67 | 1870 |
| HSA-MIR-561-3P | 99.64 | 70.90 | 3647 |
| HSA-MIR-3616-5P | 99.55 | 67.02 | 989 |
| HSA-MIR-573 | 99.55 | 67.44 | 955 |
| HSA-MIR-1244 | 99.33 | 68.38 | 832 |
| HSA-MIR-3606-5P | 99.31 | 69.67 | 1168 |
| HSA-MIR-1264 | 99.25 | 66.81 | 1317 |
| HSA-MIR-4795-5P | 99.11 | 66.90 | 876 |
| HSA-MIR-3908 | 98.75 | 67.31 | 1160 |
| HSA-MIR-6840-3P | 98.68 | 65.95 | 1923 |
| HSA-MIR-4703-5P | 98.53 | 70.13 | 1645 |
| HSA-MIR-3942-5P | 98.52 | 69.51 | 1517 |
| HSA-MIR-4766-3P | 98.48 | 67.94 | 1347 |
| HSA-MIR-7852-3P | 98.37 | 67.98 | 823 |
| HSA-MIR-3074-3P | 97.83 | 67.26 | 922 |
| HSA-MIR-6085 | 96.57 | 64.11 | 621 |
| HSA-MIR-6813-5P | 94.68 | 64.20 | 588 |
Literature-anchored findings (GeneRIF, showing 26)
- RT-PCR analysis showed strong expression of SK2 mRNA in the normal human colon. (PMID:12778407)
- Because of the marked differential expression of SK2 channels in the heart, specific ligands for Ca2+-activated K+ currents may offer a unique therapeutic opportunity to modify atrial cells without interfering with ventricular myocytes (PMID:13679367)
- SK2 plays an important role in mediating the increase in transepithelial secretion due to increases in intracellular Ca 2+. SK2 channels, therefore, may represent a target for pharmacologic modulation of bile flow. (PMID:15362045)
- The subtype SK2 channels were up-regulated under hypoxia, shown with pharmacological tools and with mRNA analysis. (PMID:16396931)
- Functions of SK2 channels in atrial myocytes are critically dependent on the normal expression of Ca(v)1.3 Ca(2+) channels. (PMID:17110593)
- Results suggest that SK2-channel activation may largely contribute to the sustained Ca2+ influx in the G0/G1 phase in comparison of that in the G2/M phase in Jurkat T-lymphocytes. (PMID:17452806)
- Present study directly defines the functional roles of SK2 channels in transgenic mice using a genetically engineered model, and provides a possible link between abnormalities in cardiac SK2 channels and cardiac arrhythmias. (PMID:19139040)
- demonstrate that proper membrane localization of a small-conductance Ca(2+)-activated K(+) channel (SK2 or K(Ca)2.2) is dependent on its interacting protein, alpha-actinin2, a major F-actin crosslinking protein. (PMID:19815520)
- Decreased expression of small-conductance Ca2+-activated K+ channels SK1 and SK2 in human chronic atrial fibrillation (PMID:22154908)
- Increase in both Ca(2+) sensitivity and SK2 protein expression contributes to the IKAS upregulation in failing human ventricles. (PMID:23525437)
- KCNN2 gene can have an important role in the development of coronary artery aneurysms in Kawasaki disease. (PMID:23677057)
- Differentiated dopaminergic neurons expressed low levels of SK2 channels and high levels of SK1 and SK3 channels. (PMID:24434522)
- The ER SK2 channel activation preserves ER Ca(2+) uptake and retention which determines cell survival in conditions where sustained ER stress contributes to progressive neuronal death. (PMID:26586570)
- Study establishes the distribution profile of SK2 channel protein in human brain.The expression of SK2 human isoform b in brain could explain the variability of electrophysiological findings observed with SK2 channels. (PMID:27357310)
- There was a significant association between the KCNN2 variants and clinically significant VTa. These findings suggest an association between KCNN2 and VTa; it also appears that KCNN2 variants may be adjunctive markers for risk stratification in patients susceptible to SCD. (PMID:27442679)
- These results provide new insights into the regulation of SK2 channel trafficking by the cytoskeletal proteins FLNA and alpha-actinin2, involving distinct recycling pathways (PMID:27779751)
- Junctophilin 2, as junctional membrane complex (JMC) protein, is an important regulator of the cardiac SK channels (PMID:29055091)
- SK current is increased via the enhanced activation of CaMKII in patients with atrial fibrillation. (PMID:29737974)
- Immuno-visualization of the subcellular localization of SK2 and SK3 subunits showed a high degree of colocalization, consistent with the formation of heteromeric SK2/SK3 channels. (PMID:30922569)
- KCNN2 mutation in autosomal-dominant tremulous myoclonus-dystonia. (PMID:32212350)
- SK2 channel regulation of neuronal excitability, synaptic transmission, and brain rhythmic activity in health and diseases. (PMID:32860835)
- Variants in the SK2 channel gene (KCNN2) lead to dominant neurodevelopmental movement disorders. (PMID:33242881)
- HDAC2-dependent remodeling of KCa2.2 (KCNN2) and KCa2.3 (KCNN3) K(+) channels in atrial fibrillation with concomitant heart failure. (PMID:33310041)
- Preferential formation of human heteromeric SK2:SK3 channels limits homomeric SK channel assembly and function. (PMID:36502918)
- Loss-of-function KCa2.2 mutations abolish channel activity. (PMID:36717104)
- A Novel KCNN2 Variant in a Family with Essential Tremor Plus: Clinical Characteristics and In Silico Analysis. (PMID:37510285)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | kcnn2 | ENSDARG00000014939 |
| mus_musculus | Kcnn2 | ENSMUSG00000054477 |
| rattus_norvegicus | Kcnn2 | ENSRNOG00000016675 |
| drosophila_melanogaster | SK | FBGN0029761 |
| caenorhabditis_elegans | WBGENE00007176 | |
| caenorhabditis_elegans | WBGENE00008265 | |
| caenorhabditis_elegans | kcnl-2 | WBGENE00008570 |
| caenorhabditis_elegans | WBGENE00015387 |
Paralogs (3): KCNN4 (ENSG00000104783), KCNN1 (ENSG00000105642), KCNN3 (ENSG00000143603)
Protein
Protein identifiers
Small conductance calcium-activated potassium channel protein 2 — Q9H2S1 (reviewed: Q9H2S1)
Alternative names: KCa2.2
All UniProt accessions (6): Q9H2S1, A0A0J9YW81, A0A3F2YNY5, A0A669KBH3, A0A9L9PY74, D6RGY7
UniProt curated annotations — full annotation on UniProt →
Function. Small conductance calcium-activated potassium channel that mediates the voltage-independent transmembrane transfer of potassium across the cell membrane through a constitutive interaction with calmodulin which binds the intracellular calcium allowing its opening. The current is characterized by a voltage-independent activation, an intracellular calcium concentration increase-dependent activation and a single-channel conductance of about 3 picosiemens. Also presents an inwardly rectifying current, thus reducing its already small outward conductance of potassium ions, which is particularly the case when the membrane potential displays positive values, above + 20 mV. The inward rectification could be due to a blockade of the outward current by intracellular divalent cations such as calcium and magnesium and could also be due to an intrinsic property of the channel pore, independent of intracellular divalent ions. There are three positively charged amino acids in the S6 transmembrane domain, close to the pore, that collectively control the conductance and rectification through an electrostatic mechanism. Additionally, electrostatic contributions from these residues also play an important role in determining the intrinsic open probability of the channel in the absence of calcium, affecting the apparent calcium affinity for activation. Forms an heteromeric complex with calmodulin, which is constitutively associated in a calcium-independent manner. Channel opening is triggered when calcium binds the calmodulin resulting in a rotary movement leading to the formation of the dimeric complex to open the gate. Plays a role in the repolarization phase of cardiac action potential.
Subunit / interactions. Homodimer. Heteromultimer with KCNN1 and KCNN3. The complex is composed of 4 channel subunits each of which binds to a calmodulin subunit which regulates the channel activity through calcium-binding. Interacts (via N-terminal domain) with MPP2.
Subcellular location. Membrane. Cytoplasm. Myofibril. Sarcomere. Z line.
Tissue specificity. Expressed in atrial myocytes (at protein level). Widely expressed.
Disease relevance. Dystonia 34, myoclonic (DYT34) [MIM:619724] A form of dystonia, a disorder defined by the presence of sustained involuntary muscle contraction, often leading to abnormal postures. DYT34 is an autosomal dominant form characterized by childhood-onset dystonia predominantly affecting hands and neck, with a fast tremor with superimposed myoclonus and, in some individuals, subtle cerebellar signs. The disease may be caused by variants affecting the gene represented in this entry. Neurodevelopmental disorder with or without variable movement or behavioral abnormalities (NEDMAB) [MIM:619725] An autosomal dominant disorder characterized by motor and language developmental delay, intellectual disability often associated with early-onset movement disorders comprising cerebellar ataxia and/or extrapyramidal symptoms. Other variable features include autism spectrum disorder or autistic features and epilepsy. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Inhibited by bee venom neurotoxin apamin. Inhibited by UCL 1684 and tetraethylammonium (TEA).
Domain organisation. The coiled-coil domaim mediates heteromeic assembly. The calmodulin-binding domain (CaMBD) forms an elongated dimer with a calmodulin molecule bound at each end; each calmodulin wraps around three alpha-helices, two from one CaMBD subunit and one from the other.
Similarity. Belongs to the potassium channel KCNN family. KCa2.2/KCNN2 subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9H2S1-1 | 1 | yes |
| Q9H2S1-2 | 2 |
RefSeq proteins (3): NP_001359162, NP_067627, NP_740721 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004178 | CaM-bd_dom | Domain |
| IPR013099 | K_chnl_dom | Domain |
| IPR015449 | K_chnl_Ca-activ_SK | Family |
| IPR036122 | CaM-bd_dom_sf | Homologous_superfamily |
Pfam: PF02888, PF03530, PF07885
Catalyzed reactions (Rhea), 1 shown:
- K(+)(in) = K(+)(out) (RHEA:29463)
UniProt features (36 total): sequence variant 10, transmembrane region 6, sequence conflict 5, region of interest 4, helix 3, compositionally biased region 2, strand 2, chain 1, modified residue 1, splice variant 1, intramembrane region 1
Structure
Experimental structures (PDB)
16 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5V03 | X-RAY DIFFRACTION | 1.58 |
| 5V02 | X-RAY DIFFRACTION | 1.78 |
| 5WBX | X-RAY DIFFRACTION | 1.9 |
| 5WC5 | X-RAY DIFFRACTION | 2.3 |
| 6ALE | X-RAY DIFFRACTION | 2.5 |
| 9ZRQ | ELECTRON MICROSCOPY | 2.77 |
| 9VUC | ELECTRON MICROSCOPY | 2.96 |
| 9O48 | ELECTRON MICROSCOPY | 3.1 |
| 9O5O | ELECTRON MICROSCOPY | 3.1 |
| 9O52 | ELECTRON MICROSCOPY | 3.18 |
| 9VUA | ELECTRON MICROSCOPY | 3.23 |
| 9O53 | ELECTRON MICROSCOPY | 3.3 |
| 9ZRR | ELECTRON MICROSCOPY | 3.31 |
| 9VU9 | ELECTRON MICROSCOPY | 3.34 |
| 9VUB | ELECTRON MICROSCOPY | 3.35 |
| 9O51 | ELECTRON MICROSCOPY | 3.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H2S1-F1 | 77.98 | 0.44 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 160
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-1296052 | Ca2+ activated K+ channels |
| R-HSA-9667769 | Acetylcholine inhibits contraction of outer hair cells |
| R-HSA-112316 | Neuronal System |
| R-HSA-1296071 | Potassium Channels |
| R-HSA-9659379 | Sensory processing of sound |
| R-HSA-9662361 | Sensory processing of sound by outer hair cells of the cochlea |
| R-HSA-9709957 | Sensory Perception |
MSigDB gene sets: 261 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_UP, GSE45365_NK_CELL_VS_CD8A_DC_DN, GOBP_POTASSIUM_ION_TRANSPORT, CREL_01, TGCGCANK_UNKNOWN, GOBP_CIRCULATORY_SYSTEM_PROCESS, TGCACTT_MIR519C_MIR519B_MIR519A, REACTOME_POTASSIUM_CHANNELS, GCANCTGNY_MYOD_Q6, GOCC_CELL_SURFACE, AP4_Q6, AP2_Q3, CAGCTG_AP4_Q5, SP1_Q2_01, GOBP_MONOATOMIC_CATION_TRANSPORT
GO Biological Process (7): potassium ion transport (GO:0006813), potassium ion transmembrane transport (GO:0071805), membrane repolarization during atrial cardiac muscle cell action potential (GO:0098914), regulation of potassium ion transmembrane transport (GO:1901379), monoatomic ion transport (GO:0006811), monoatomic ion transmembrane transport (GO:0034220), monoatomic cation transmembrane transport (GO:0098655)
GO Molecular Function (9): inward rectifier potassium channel activity (GO:0005242), calmodulin binding (GO:0005516), calcium-activated potassium channel activity (GO:0015269), small conductance calcium-activated potassium channel activity (GO:0016286), protein domain specific binding (GO:0019904), protein homodimerization activity (GO:0042803), alpha-actinin binding (GO:0051393), potassium channel activity (GO:0005267), protein binding (GO:0005515)
GO Cellular Component (7): plasma membrane (GO:0005886), cell surface (GO:0009986), membrane (GO:0016020), Z disc (GO:0030018), neuronal cell body (GO:0043025), dendritic spine (GO:0043197), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Potassium Channels | 1 |
| Sensory processing of sound by outer hair cells of the cochlea | 1 |
| Neuronal System | 1 |
| Sensory Perception | 1 |
| Sensory processing of sound | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| protein binding | 2 |
| metal ion transport | 1 |
| potassium ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| membrane repolarization during cardiac muscle cell action potential | 1 |
| atrial cardiac muscle cell action potential | 1 |
| atrial cardiac muscle cell membrane repolarization | 1 |
| regulation of potassium ion transport | 1 |
| potassium ion transmembrane transport | 1 |
| regulation of monoatomic cation transmembrane transport | 1 |
| transport | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| monoatomic cation transport | 1 |
| monoatomic ion transmembrane transport | 1 |
| voltage-gated potassium channel activity | 1 |
| ligand-gated monoatomic cation channel activity | 1 |
| calcium-activated cation channel activity | 1 |
| potassium channel activity | 1 |
| calcium-activated potassium channel activity | 1 |
| identical protein binding | 1 |
| protein dimerization activity | 1 |
| actinin binding | 1 |
| monoatomic cation channel activity | 1 |
| potassium ion transmembrane transporter activity | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| I band | 1 |
| somatodendritic compartment | 1 |
| cell body | 1 |
| dendrite | 1 |
| neuron spine | 1 |
| postsynapse | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1034 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KCNN2 | CALM1 | P02593 | 922 |
| KCNN2 | CALML3 | P27482 | 903 |
| KCNN2 | CALML6 | Q8TD86 | 903 |
| KCNN2 | CALML4 | Q96GE6 | 903 |
| KCNN2 | CALML5 | Q9NZT1 | 903 |
| KCNN2 | CACNA1D | Q01668 | 803 |
| KCNN2 | CAMK1G | Q96NX5 | 767 |
| KCNN2 | KCNMA1 | Q12791 | 709 |
| KCNN2 | CSN3 | P07498 | 697 |
| KCNN2 | KCND3 | Q9UK17 | 688 |
| KCNN2 | KCNJ3 | P48549 | 680 |
| KCNN2 | KCNMB4 | Q86W47 | 655 |
| KCNN2 | CACNA1C | Q13936 | 654 |
| KCNN2 | KCNA5 | P22460 | 605 |
| KCNN2 | KCNJ8 | Q15842 | 588 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| KCNN2 | ACTN2 | psi-mi:“MI:0407”(direct interaction) | 0.530 |
| KCNN2 | ACTN2 | psi-mi:“MI:0915”(physical association) | 0.530 |
| KCNN2 | SRPK2 | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| SRPK1 | KCNN2 | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| KCNN2 | CALM1 | psi-mi:“MI:0407”(direct interaction) | 0.410 |
BioGRID (7): KCNN2 (Affinity Capture-RNA), KCNN2 (Co-crystal Structure), CALM1 (Co-crystal Structure), KCNN2 (Affinity Capture-MS), ACTN2 (Reconstituted Complex), KCNN2 (Biochemical Activity), KCNN2 (Biochemical Activity)
ESM2 similar proteins: A0A0B7P9G0, B1H1G2, B8Q0B2, O18866, O18867, O95259, P29973, P29974, P70604, Q00194, Q00195, Q03041, Q03720, Q08460, Q0IH22, Q12791, Q16280, Q16281, Q21029, Q28204, Q28279, Q28718, Q28EW0, Q29441, Q3BCU4, Q5PQZ7, Q5U2P1, Q60603, Q62398, Q62927, Q62976, Q63472, Q6JWV8, Q8JH92, Q8NCM2, Q8NE79, Q90805, Q90980, Q90ZC7, Q920E3
Diamond homologs: O15554, O89109, P58390, P58391, P58392, P70604, P70605, P70606, Q02006, Q7KVW5, Q92952, Q9EQR3, Q9H2S1, Q9QYW1, Q9UGI6, O43525, O88944, P58126, Q11122, Q8K3F6, P17971
SIGNOR signaling
7 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRKACA | down-regulates | KCNN2 | phosphorylation |
| Riluzole | “up-regulates activity” | KCNN2 | “chemical activation” |
| Naphtho[1,2-d]thiazol-2-amine | “up-regulates activity” | KCNN2 | “chemical activation” |
| UBE3A | “up-regulates activity” | KCNN2 | ubiquitination |
Disease & clinical
Clinical variants and AI predictions
ClinVar
209 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 9 |
| Likely pathogenic | 9 |
| Uncertain significance | 152 |
| Likely benign | 27 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (18)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3069186 | NM_021614.4(KCNN2):c.1384dup (p.Thr462fs) | Pathogenic |
| 3573579 | NM_021614.4(KCNN2):c.1960_1961dup (p.Ile655fs) | Pathogenic |
| 3862961 | NM_021614.4(KCNN2):c.1993C>T (p.Arg665Ter) | Pathogenic |
| 4526147 | NC_000005.9:g.(113740554_113798745)(113832194?)del | Pathogenic |
| 933141 | NM_021614.4(KCNN2):c.1436_1439del (p.Leu478_Tyr479insTer) | Pathogenic |
| 933142 | NM_021614.4(KCNN2):c.1116C>A (p.Tyr372Ter) | Pathogenic |
| 933146 | NM_021614.4(KCNN2):c.1720G>A (p.Gly574Ser) | Pathogenic |
| 933147 | NM_021614.4(KCNN2):c.1798C>G (p.Leu600Val) | Pathogenic |
| 933149 | NM_021614.4(KCNN2):c.1931T>C (p.Leu644Pro) | Pathogenic |
| 1699369 | NM_021614.4(KCNN2):c.1771G>C (p.Gly591Arg) | Likely pathogenic |
| 2499578 | NM_021614.4(KCNN2):c.1977dup (p.Val660fs) | Likely pathogenic |
| 3365762 | NM_021614.4(KCNN2):c.1698_1700dup (p.Thr567_Phe568insThr) | Likely pathogenic |
| 3767210 | NM_021614.4(KCNN2):c.1685G>T (p.Trp562Leu) | Likely pathogenic |
| 3775904 | NM_021614.4(KCNN2):c.548C>A (p.Ser183Ter) | Likely pathogenic |
| 4534846 | NM_021614.4(KCNN2):c.1267dup (p.Tyr423fs) | Likely pathogenic |
| 4814029 | NM_021614.4(KCNN2):c.1780-2A>G | Likely pathogenic |
| 933143 | NM_021614.4(KCNN2):c.1498_1499delinsTC (p.Ile500Ser) | Likely pathogenic |
| 933145 | NM_021614.4(KCNN2):c.1718A>G (p.Tyr573Cys) | Likely pathogenic |
SpliceAI
1935 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:114361044:G:GT | donor_gain | 1.0000 |
| 5:114404433:TTCA:T | acceptor_loss | 1.0000 |
| 5:114404434:TCAG:T | acceptor_loss | 1.0000 |
| 5:114404436:A:AG | acceptor_gain | 1.0000 |
| 5:114404436:AGT:A | acceptor_loss | 1.0000 |
| 5:114404436:AGTT:A | acceptor_gain | 1.0000 |
| 5:114404437:G:GG | acceptor_gain | 1.0000 |
| 5:114404437:GTT:G | acceptor_gain | 1.0000 |
| 5:114404437:GTTG:G | acceptor_gain | 1.0000 |
| 5:114463043:TTTCA:T | acceptor_loss | 1.0000 |
| 5:114463044:TTCA:T | acceptor_loss | 1.0000 |
| 5:114463046:CA:C | acceptor_loss | 1.0000 |
| 5:114463047:A:AG | acceptor_gain | 1.0000 |
| 5:114463047:AGG:A | acceptor_loss | 1.0000 |
| 5:114463048:G:GG | acceptor_gain | 1.0000 |
| 5:114463048:G:GT | acceptor_loss | 1.0000 |
| 5:114463048:GGT:G | acceptor_gain | 1.0000 |
| 5:114463187:TATG:T | donor_gain | 1.0000 |
| 5:114463188:ATG:A | donor_gain | 1.0000 |
| 5:114463188:ATGGT:A | donor_loss | 1.0000 |
| 5:114463189:TGG:T | donor_loss | 1.0000 |
| 5:114463190:GGT:G | donor_loss | 1.0000 |
| 5:114463191:G:GA | donor_loss | 1.0000 |
| 5:114463191:G:GG | donor_gain | 1.0000 |
| 5:114463192:T:A | donor_loss | 1.0000 |
| 5:114473052:AG:A | acceptor_gain | 1.0000 |
| 5:114473053:GG:G | acceptor_gain | 1.0000 |
| 5:114473160:AAAGA:A | donor_gain | 1.0000 |
| 5:114473161:AAGA:A | donor_gain | 1.0000 |
| 5:114473162:AGA:A | donor_gain | 1.0000 |
AlphaMissense
5191 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:114363137:T:A | L121Q | 1.000 |
| 5:114363137:T:C | L121P | 1.000 |
| 5:114363145:C:G | R124G | 1.000 |
| 5:114363146:G:C | R124P | 1.000 |
| 5:114363149:G:C | R125P | 1.000 |
| 5:114363155:T:C | L127P | 1.000 |
| 5:114363157:T:C | F128L | 1.000 |
| 5:114363158:T:G | F128C | 1.000 |
| 5:114363159:C:A | F128L | 1.000 |
| 5:114363159:C:G | F128L | 1.000 |
| 5:114363166:C:A | R131S | 1.000 |
| 5:114363167:G:C | R131P | 1.000 |
| 5:114363173:G:C | R133P | 1.000 |
| 5:114363176:T:C | L134P | 1.000 |
| 5:114363178:A:C | S135R | 1.000 |
| 5:114363180:C:A | S135R | 1.000 |
| 5:114363180:C:G | S135R | 1.000 |
| 5:114363181:G:C | D136H | 1.000 |
| 5:114363182:A:C | D136A | 1.000 |
| 5:114363182:A:T | D136V | 1.000 |
| 5:114363187:G:C | A138P | 1.000 |
| 5:114363191:T:A | L139H | 1.000 |
| 5:114363191:T:C | L139P | 1.000 |
| 5:114363199:G:C | G142R | 1.000 |
| 5:114363200:G:A | G142D | 1.000 |
| 5:114363208:G:C | G145R | 1.000 |
| 5:114363209:G:A | G145D | 1.000 |
| 5:114363209:G:T | G145V | 1.000 |
| 5:114363221:T:A | M149K | 1.000 |
| 5:114363239:T:C | L155P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000005016 (5:114121995 C>T), RS1000010913 (5:114468625 A>C), RS1000013083 (5:114113484 A>G), RS1000019751 (5:114306710 T>C), RS1000021223 (5:114449000 C>T), RS1000026367 (5:114432323 C>A), RS1000055449 (5:114163443 T>G), RS1000059658 (5:114425585 G>A,C), RS1000060580 (5:114372019 G>T), RS1000061421 (5:114333131 C>T), RS1000062411 (5:114387747 A>C), RS1000076398 (5:114147839 T>C), RS1000087790 (5:114297955 C>T), RS1000088424 (5:114454357 A>G), RS1000089644 (5:114308066 C>T)
Disease associations
OMIM: gene MIM:605879 | disease phenotypes: MIM:619724, MIM:619725
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder with or without variable movement or behavioral abnormalities | Strong | Autosomal dominant |
Mondo (6): dystonia 34, myoclonic (MONDO:0030538), neurodevelopmental disorder with or without variable movement or behavioral abnormalities (MONDO:0859225), neurodevelopmental disorder (MONDO:0700092), primary ovarian failure (MONDO:0005387), cerebellar ataxia (MONDO:0000437), intellectual disability (MONDO:0001071)
Orphanet (3): Rare ataxia (Orphanet:102002), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
42 total (30 of 42 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000252 | Microcephaly |
| HP:0000473 | Torticollis |
| HP:0000508 | Ptosis |
| HP:0000646 | Amblyopia |
| HP:0000709 | Psychosis |
| HP:0000729 | Autistic behavior |
| HP:0000733 | Motor stereotypy |
| HP:0000739 | Anxiety |
| HP:0000750 | Delayed speech and language development |
| HP:0001249 | Intellectual disability |
| HP:0001251 | Ataxia |
| HP:0001263 | Global developmental delay |
| HP:0001270 | Motor delay |
| HP:0001300 | Parkinsonism |
| HP:0001332 | Dystonia |
| HP:0001336 | Myoclonus |
| HP:0001583 | Rotary nystagmus |
| HP:0002067 | Bradykinesia |
| HP:0002069 | Bilateral tonic-clonic seizure |
| HP:0002072 | Chorea |
| HP:0002080 | Intention tremor |
| HP:0002188 | Delayed CNS myelination |
| HP:0002322 | Resting tremor |
| HP:0002346 | Head tremor |
| HP:0002356 | Writer’s cramp |
| HP:0002378 | Hand tremor |
| HP:0002396 | Cogwheel rigidity |
| HP:0002518 | Abnormal periventricular white matter morphology |
| HP:0003593 | Infantile onset |
GWAS associations
19 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_236 | Obesity-related traits | 5.000000e-06 |
| GCST002026_1 | Coronary arterial lesions in patients with Kawasaki disease | 2.000000e-08 |
| GCST003427_8 | Alzheimer disease and age of onset | 9.000000e-07 |
| GCST003542_138 | Night sleep phenotypes | 7.000000e-06 |
| GCST004032_4 | JT interval (sulfonylurea treatment interaction) | 9.000000e-07 |
| GCST004295_2 | Atrial fibrillation | 3.000000e-08 |
| GCST006061_46 | Atrial fibrillation | 1.000000e-13 |
| GCST006061_47 | Atrial fibrillation | 1.000000e-10 |
| GCST006414_91 | Atrial fibrillation | 2.000000e-16 |
| GCST007094_25 | Diastolic blood pressure | 7.000000e-09 |
| GCST007095_116 | Systolic blood pressure | 2.000000e-08 |
| GCST007095_117 | Systolic blood pressure | 3.000000e-07 |
| GCST007098_17 | Diastolic blood pressure | 4.000000e-08 |
| GCST007098_18 | Diastolic blood pressure | 2.000000e-06 |
| GCST007099_107 | Systolic blood pressure | 2.000000e-10 |
| GCST007353_7 | Generalized epilepsy | 7.000000e-10 |
| GCST011516_2 | joint destruction in rheumatoid arthritis (rapid vs slow) | 2.000000e-07 |
| GCST011517_1 | joint destruction in rheumatoid arthritis (rapid vs slow) | 9.000000e-09 |
| GCST012460_6 | Atrial fibrillation | 1.000000e-10 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004502 | adiponectin measurement |
| EFO:0004847 | age at onset |
| EFO:0007885 | JT interval |
| EFO:0007922 | response to sulfonylurea |
| EFO:0006336 | diastolic blood pressure |
| EFO:0006335 | systolic blood pressure |
| EFO:0005413 | joint damage measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002524 | Cerebellar Ataxia | C10.228.140.252.190; C10.597.350.090.500; C23.888.592.350.090.200 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL4469 (SINGLE PROTEIN), CHEMBL4524132 (PROTEIN FAMILY)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 3,066 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL449782 | CEPHARANTHINE | 2 | 3,066 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: vgic — Calcium- and sodium-activated potassium channels (KCa, KNa)
Most potent curated ligand interactions (27 total), top 25:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| tamapin | Antagonist | 10.6 | pIC50 |
| UCL1684 | Inhibitor | 10.06 | pIC50 |
| leiurotoxin I | Antagonist | 9.7 | pIC50 |
| UCL1848 | Antagonist | 9.6 | pIC50 |
| apamin | Inhibitor | 9.4 | pKd |
| Lei-Dab7 | Inhibitor | 8.42 | pIC50 |
| P05 | Antagonist | 7.7 | pIC50 |
| RA-2 | Antagonist | 7.7 | pIC50 |
| dequalinium | Antagonist | 6.8 | pIC50 |
| tetrandrine | Inhibition | 6.51 | pKi |
| Ca2+ | Agonist | 6.5 | pEC50 |
| NS8593 | Channel blocker | 6.4 | pIC50 |
| NS309 | Agonist | 6.2 | pEC50 |
| AP14145 | Inhibitor | 5.96 | pIC50 |
| NS13001 | Agonist | 5.74 | pEC50 |
| tubocurarine | Antagonist | 5.7 | pIC50 |
| SKA-31 | Agonist | 5.7 | pEC50 |
| AP30663 | Channel blocker | 5.64 | pIC50 |
| rimtuzalcap | Activator | 5.29 | pIC50 |
| CyPPA | Agonist | 4.9 | pEC50 |
| riluzole | Agonist | 4.89 | pEC50 |
| bicuculline | Antagonist | 4.6 | pIC50 |
| DC-EBIO | Agonist | 4.6 | pEC50 |
| chlorzoxazone | Activator | 4.1 | pEC50 |
| EBIO | Agonist | 3.3 | pEC50 |
ChEMBL bioactivities
22 potent at pChembl≥5 of 23 total, top 22 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.96 | IC50 | 11 | nM | CHEMBL476339 |
| 7.33 | Kd | 47 | nM | CHEMBL511710 |
| 7.23 | IC50 | 59 | nM | CHEMBL476339 |
| 7.05 | Ki | 90 | nM | CHEMBL1909931 |
| 6.91 | IC50 | 123 | nM | CHEMBL489770 |
| 6.71 | Ki | 194 | nM | CHEMBL1909929 |
| 6.56 | Ki | 277 | nM | CHEMBL1182632 |
| 6.55 | Ki | 284 | nM | BERBAMINE |
| 6.51 | Ki | 306 | nM | FANCHININ |
| 6.40 | Ki | 397 | nM | CHEMBL1909932 |
| 6.28 | IC50 | 530 | nM | CHEMBL472452 |
| 6.26 | IC50 | 543 | nM | CHEMBL489770 |
| 6.23 | Ki | 593 | nM | CHEMBL1909928 |
| 6.10 | EC50 | 800 | nM | CHEMBL499968 |
| 6.06 | Ki | 878 | nM | CHEMBL1909930 |
| 5.96 | IC50 | 1100 | nM | CHEMBL452406 |
| 5.90 | Ki | 1256 | nM | CHEMBL1182643 |
| 5.88 | Ki | 1318 | nM | CEPHARANTHINE |
| 5.77 | Ki | 1685 | nM | CHEMBL1185254 |
| 5.75 | EC50 | 1800 | nM | CHEMBL5421015 |
| 5.58 | IC50 | 2600 | nM | CHEMBL257156 |
| 5.30 | EC50 | 5000 | nM | CHEMBL444449 |
PubChem BioAssay actives
21 with measured affinity, of 47 total; 19 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-(4-methyl-2-pyridinyl)-4-pyridin-2-yl-1,3-thiazol-2-amine | 387520: Inhibition of Kca2.2 channel expressed in HEK293 cells by thallium flux assay | ic50 | 0.0110 | uM |
| N-(6,7-dichloro-1,2,3,4-tetrahydronaphthalen-1-yl)-1H-benzimidazol-2-amine | 347105: Inhibition of human SK2 channel by inside-out patch clamp technique | kd | 0.0470 | uM |
| 2-methyl-1-[[3-[(2-methyl-8-propan-2-ylisoquinolin-2-ium-1-yl)methyl]phenyl]methyl]-8-propan-2-ylisoquinolin-2-ium diiodide | 626505: Displacement of [125I]-apamin from cloned SK2 channel expressed in human HEK293 cells after 1 hr by liquid scintillation counting | ki | 0.0900 | uM |
| N,4-dipyridin-2-yl-1,3-thiazol-2-amine | 387520: Inhibition of Kca2.2 channel expressed in HEK293 cells by thallium flux assay | ic50 | 0.1230 | uM |
| 2-methyl-1-[4-(2-methyl-8-propan-2-ylisoquinolin-2-ium-1-yl)butyl]-8-propan-2-ylisoquinolin-2-ium diiodide | 626505: Displacement of [125I]-apamin from cloned SK2 channel expressed in human HEK293 cells after 1 hr by liquid scintillation counting | ki | 0.1940 | uM |
| (1S)-1-[3-[(1S)-6,7-dimethoxy-2-methyl-3,4-dihydro-1H-isoquinolin-1-yl]propyl]-6,7-dimethoxy-2-methyl-3,4-dihydro-1H-isoquinoline | 2006726: Displacement of [125I]apamin from SK2 (unknown origin) expressed in HEK293 cells assessed as inhibition constant incubated for 1 hr by liquid scintillation counting analysis | ki | 0.2770 | uM |
| (1S,14R)-20,21,25-trimethoxy-15,30-dimethyl-7,23-dioxa-15,30-diazaheptacyclo[22.6.2.23,6.18,12.114,18.027,31.022,33]hexatriaconta-3(36),4,6(35),8,10,12(34),18,20,22(33),24,26,31-dodecaen-9-ol | 2006723: Displacement of [125I]apamin from human SK2 expressed in HEK293 cells assessed as inhibition constant incubated for 1 hr by liquid scintillation counting analysis | ki | 0.2840 | uM |
| (1S,14S)-9,20,21,25-tetramethoxy-15,30-dimethyl-7,23-dioxa-15,30-diazaheptacyclo[22.6.2.23,6.18,12.114,18.027,31.022,33]hexatriaconta-3(36),4,6(35),8,10,12(34),18,20,22(33),24,26,31-dodecaene | 2006726: Displacement of [125I]apamin from SK2 (unknown origin) expressed in HEK293 cells assessed as inhibition constant incubated for 1 hr by liquid scintillation counting analysis | ki | 0.3060 | uM |
| 2-methyl-1-[[4-[(2-methyl-8-propan-2-ylisoquinolin-2-ium-1-yl)methyl]phenyl]methyl]-8-propan-2-ylisoquinolin-2-ium diiodide | 626505: Displacement of [125I]-apamin from cloned SK2 channel expressed in human HEK293 cells after 1 hr by liquid scintillation counting | ki | 0.3970 | uM |
| 5-chloro-N-(thiophen-2-ylmethyl)pyrazolo[1,5-a]pyrimidin-7-amine | 349492: Inhibition of Kca2.2 channel expressed in HEK293 cells by thallium flux assay | ic50 | 0.5300 | uM |
| 2-methyl-1-[3-(2-methyl-8-propan-2-ylisoquinolin-2-ium-1-yl)propyl]-8-propan-2-ylisoquinolin-2-ium diiodide | 626505: Displacement of [125I]-apamin from cloned SK2 channel expressed in human HEK293 cells after 1 hr by liquid scintillation counting | ki | 0.5930 | uM |
| 6,7-dichloro-3-nitroso-1H-indol-2-ol | 1974165: Positive modulation of SK2 in HEK293 cells in presence of Ca2+ by patch-clamp method | ec50 | 0.8000 | uM |
| 2-methyl-1-[5-(2-methyl-8-propan-2-ylisoquinolin-2-ium-1-yl)pentyl]-8-propan-2-ylisoquinolin-2-ium diiodide | 626505: Displacement of [125I]-apamin from cloned SK2 channel expressed in human HEK293 cells after 1 hr by liquid scintillation counting | ki | 0.8780 | uM |
| N-benzyl-5-chloropyrazolo[1,5-a]pyrimidin-7-amine | 349492: Inhibition of Kca2.2 channel expressed in HEK293 cells by thallium flux assay | ic50 | 1.1000 | uM |
| (1R)-1-[3-[(1R)-6,7-dimethoxy-2-methyl-3,4-dihydro-1H-isoquinolin-1-yl]propyl]-6,7-dimethoxy-2-methyl-3,4-dihydro-1H-isoquinoline | 2006726: Displacement of [125I]apamin from SK2 (unknown origin) expressed in HEK293 cells assessed as inhibition constant incubated for 1 hr by liquid scintillation counting analysis | ki | 1.2560 | uM |
| (14S,27R)-22,33-dimethoxy-13,28-dimethyl-2,5,7,20-tetraoxa-13,28-diazaoctacyclo[25.6.2.216,19.13,10.121,25.04,8.031,35.014,39]nonatriaconta-1(33),3(39),4(8),9,16(38),17,19(37),21,23,25(36),31,34-dodecaene | 2006723: Displacement of [125I]apamin from human SK2 expressed in HEK293 cells assessed as inhibition constant incubated for 1 hr by liquid scintillation counting analysis | ki | 1.3180 | uM |
| (1S)-1-[3-[(1R)-6,7-dimethoxy-2-methyl-3,4-dihydro-1H-isoquinolin-1-yl]propyl]-6,7-dimethoxy-2-methyl-3,4-dihydro-1H-isoquinoline | 2006726: Displacement of [125I]apamin from SK2 (unknown origin) expressed in HEK293 cells assessed as inhibition constant incubated for 1 hr by liquid scintillation counting analysis | ki | 1.6850 | uM |
| N-(4-chlorophenyl)-2-(3,5-dimethylpyrazol-1-yl)-9-methylpurin-6-amine | 1974165: Positive modulation of SK2 in HEK293 cells in presence of Ca2+ by patch-clamp method | ec50 | 1.8000 | uM |
| (1S)-1-[3-[(1S)-6,7-dimethoxy-2-methyl-3,4-dihydro-1H-isoquinolin-1-yl]propyl]-6,7-dimethoxy-2-methyl-3,4-dihydro-1H-isoquinoline;dihydrochloride | 332057: Inhibition of SK2 expressed in CHO FlipIn cells by whole cell patch-clamp assay | ic50 | 2.6000 | uM |
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 7 |
| Benzo(a)pyrene | increases mutagenesis, decreases expression, increases methylation | 3 |
| entinostat | increases expression, affects cotreatment | 2 |
| Apamin | decreases reaction, increases activity, increases import, decreases activity | 2 |
| Doxorubicin | decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression, affects expression | 2 |
| methylmercuric chloride | increases expression | 1 |
| bisphenol A | increases expression | 1 |
| arsenite | increases methylation | 1 |
| mono-(2-ethylhexyl)phthalate | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, increases expression, decreases reaction | 1 |
| celastrol | decreases expression | 1 |
| leiurotoxin I | decreases activity | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| gedunin | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, decreases expression, affects cotreatment | 1 |
| dorsomorphin | affects cotreatment, increases expression, decreases expression | 1 |
| (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II) | increases expression | 1 |
| cyclohexyl-(2-(3,5-dimethylpyrazol-1-yl)-6-methylpyrimidin-4-yl)amine | increases import, increases reaction, decreases reaction, increases activity | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Bupivacaine | decreases activity | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Calcium | increases activity, increases reaction | 1 |
| Cytarabine | decreases expression | 1 |
| Demecolcine | increases expression | 1 |
| Etoposide | decreases expression | 1 |
| Lipopolysaccharides | increases expression, affects cotreatment, decreases reaction | 1 |
ChEMBL screening assays
22 unique, capped per target: 22 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1008913 | Binding | Inhibition of human SK2 channel by inside-out patch clamp technique | Synthesis and structure-activity relationship studies of 2-(N-substituted)-aminobenzimidazoles as potent negative gating modulators ofsmall conductance Ca2+-activated K+ channels. — J Med Chem |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT00417066 | PHASE4 | COMPLETED | Flexible GnRH Antagonist vs Flare up GnRH Agonist Protocol in Poor Responders |
| NCT00732693 | PHASE4 | COMPLETED | Evaluation of Physiologic and Standard Sex Steroid Replacement Regimens in Women With Premature Ovarian Failure |
| NCT00837616 | PHASE4 | COMPLETED | Estrogen Dosing in Turner Syndrome: Pharmacology and Metabolism |
| NCT01853501 | PHASE4 | UNKNOWN | Effects of ADSC Therapy in Women With POF |
| NCT02783937 | PHASE4 | COMPLETED | Filgrastim for Premature Ovarian Insufficiency |
| NCT03535480 | PHASE4 | UNKNOWN | Autologous Bone Marrow Stem Cell Ovarian Transplantation to Restore Ovarian Function in Premature Ovarian Failure |
| NCT00950196 | PHASE4 | COMPLETED | Amantadine for Improving Neurologic Symptoms in Ataxia-Telangiectasia |
| NCT04107740 | PHASE4 | COMPLETED | C-Trelin Orally Disintegrated(OD) Tablet 5mg in Ataxia Due to Spinocerebellar Degeneration |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
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Related Atlas pages
- Associated diseases: neurodevelopmental disorder with or without variable movement or behavioral abnormalities
- Targeted by drugs: Calcium, Chlorzoxazone, Dequalinium, Riluzole, Tubocurarine
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cerebellar ataxia, coronary aneurysm, dystonia 34, myoclonic, idiopathic generalized epilepsy, neurodevelopmental disorder with or without variable movement or behavioral abnormalities