KCNN4
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Also known as KCa3.1hSK4hKCa4hIKCa1IK
Summary
KCNN4 (potassium calcium-activated channel subfamily N member 4, HGNC:6293) is a protein-coding gene on chromosome 19q13.31, encoding Intermediate conductance calcium-activated potassium channel protein 4 (O15554). Intermediate conductance calcium-activated potassium channel that mediates the voltage-independent transmembrane transfer of potassium across the cell membrane through a constitutive interaction with calmodulin which binds the intracellular calcium allowing its opening.
The protein encoded by this gene is part of a potentially heterotetrameric voltage-independent potassium channel that is activated by intracellular calcium. Activation is followed by membrane hyperpolarization, which promotes calcium influx. The encoded protein may be part of the predominant calcium-activated potassium channel in T-lymphocytes. This gene is similar to other KCNN family potassium channel genes, but it differs enough to possibly be considered as part of a new subfamily.
Source: NCBI Gene 3783 — RefSeq curated summary.
At a glance
- Gene–disease (curated): dehydrated hereditary stomatocytosis 2 (Strong, GenCC) — +2 more curated relationships
- GWAS associations: 26
- Clinical variants (ClinVar): 258 total — 2 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 73
- Druggable target: yes — 2 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_002250
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6293 |
| Approved symbol | KCNN4 |
| Name | potassium calcium-activated channel subfamily N member 4 |
| Location | 19q13.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KCa3.1, hSK4, hKCa4, hIKCa1, IK |
| Ensembl gene | ENSG00000104783 |
| Ensembl biotype | protein_coding |
| OMIM | 602754 |
| Entrez | 3783 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 9 protein_coding, 3 retained_intron, 2 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000597184, ENST00000598836, ENST00000599107, ENST00000599720, ENST00000600408, ENST00000600909, ENST00000601549, ENST00000648053, ENST00000648319, ENST00000852944, ENST00000852945, ENST00000852946, ENST00000969511, ENST00000969512, ENST00000969513
RefSeq mRNA: 1 — MANE Select: NM_002250
NM_002250
CCDS: CCDS12630
Canonical transcript exons
ENST00000648319 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000710931 | 43772000 | 43772135 |
| ENSE00000710933 | 43774192 | 43774619 |
| ENSE00001355606 | 43766533 | 43767089 |
| ENSE00002533195 | 43776541 | 43776636 |
| ENSE00003517588 | 43769442 | 43769560 |
| ENSE00003560727 | 43767540 | 43767707 |
| ENSE00003600564 | 43769719 | 43769829 |
| ENSE00003676513 | 43768963 | 43769032 |
| ENSE00003838655 | 43780703 | 43780973 |
Expression profiles
Bgee: expression breadth ubiquitous, 200 present calls, max score 94.43.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.3425 / max 340.5101, expressed in 1131 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 181355 | 8.8171 | 991 |
| 181356 | 2.1618 | 662 |
| 181357 | 1.1000 | 505 |
| 181358 | 0.2636 | 142 |
Top tissues by expression
285 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| olfactory segment of nasal mucosa | UBERON:0005386 | 94.43 | gold quality |
| parotid gland | UBERON:0001831 | 94.32 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 94.17 | gold quality |
| minor salivary gland | UBERON:0001830 | 93.66 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 91.58 | gold quality |
| granulocyte | CL:0000094 | 90.83 | gold quality |
| skin of leg | UBERON:0001511 | 90.05 | gold quality |
| trachea | UBERON:0003126 | 89.89 | gold quality |
| mouth mucosa | UBERON:0003729 | 89.44 | gold quality |
| skin of abdomen | UBERON:0001416 | 87.87 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 87.85 | gold quality |
| placenta | UBERON:0001987 | 87.21 | gold quality |
| lymph node | UBERON:0000029 | 86.56 | gold quality |
| transverse colon | UBERON:0001157 | 86.45 | gold quality |
| rectum | UBERON:0001052 | 85.98 | gold quality |
| zone of skin | UBERON:0000014 | 85.91 | gold quality |
| vermiform appendix | UBERON:0001154 | 85.82 | gold quality |
| spleen | UBERON:0002106 | 85.57 | gold quality |
| right uterine tube | UBERON:0001302 | 84.75 | gold quality |
| tonsil | UBERON:0002372 | 84.62 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 84.56 | gold quality |
| monocyte | CL:0000576 | 84.26 | gold quality |
| prostate gland | UBERON:0002367 | 84.21 | gold quality |
| leukocyte | CL:0000738 | 84.17 | gold quality |
| mononuclear cell | CL:0000842 | 84.07 | gold quality |
| body of stomach | UBERON:0001161 | 83.95 | gold quality |
| caecum | UBERON:0001153 | 83.21 | gold quality |
| gall bladder | UBERON:0002110 | 82.62 | gold quality |
| bone marrow cell | CL:0002092 | 82.56 | gold quality |
| blood | UBERON:0000178 | 82.51 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-10855 | yes | 987.12 |
| E-MTAB-9841 | yes | 835.15 |
| E-MTAB-10885 | yes | 564.93 |
| E-MTAB-6701 | yes | 119.85 |
| E-ANND-3 | yes | 10.32 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): REST
miRNA regulators (miRDB)
44 targeting KCNN4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-556-3P | 99.74 | 68.75 | 1203 |
| HSA-MIR-3659 | 99.70 | 67.97 | 694 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-646 | 99.68 | 67.84 | 1645 |
| HSA-MIR-875-3P | 99.63 | 69.47 | 2548 |
| HSA-MIR-6134 | 99.63 | 65.68 | 1537 |
| HSA-MIR-4524A-5P | 99.57 | 71.73 | 1193 |
| HSA-MIR-4524B-5P | 99.57 | 71.68 | 1195 |
| HSA-MIR-4325 | 99.49 | 72.20 | 1342 |
| HSA-MIR-133A-3P | 99.27 | 71.53 | 1270 |
| HSA-MIR-133B | 99.27 | 71.53 | 1270 |
| HSA-MIR-10399-5P | 99.17 | 69.87 | 2610 |
| HSA-MIR-6504-3P | 99.17 | 69.31 | 2891 |
| HSA-MIR-485-5P | 99.10 | 64.78 | 1889 |
Literature-anchored findings (GeneRIF, showing 40)
- functional role of the intermediate conductance Ca(2+)-activated K(+) channel, hIK1, in HaCaT keratinocytes (PMID:12421833)
- trafficking depends upon a C-terminal leucine zipper (PMID:12493744)
- arachidonic acid (AA) interacts with the pore-lining amino acids, Thr(250) and Val(275) in hIK1, conferring inhibition of hIK1 by AA (PMID:12609997)
- Ca2+-activated Cl- secretion in native human airway epithelia requires activation of Ca2+-dependent basolateral K+ channels (hSK4). (PMID:12612194)
- SK4 is the gene that codes for the Gardos channel in red blood cells. This channel is important pathophysiologically, because it represents the major pathway for cell shrinkage via KCl and water loss that occurs in sickle cell disease. (PMID:12773623)
- K(Ca) channels presenting the pharmacology of SK4 channels are present on both apical and basolateral membranes, but it is the basolateral SK4-like channels that play a major role in calcium-dependent chloride secretion in 16HBE14o- cells. (PMID:14724753)
- the NH(2) terminus of hIK1 contains overlapping leucine zipper and dileucine motifs essential for channel assembly and trafficking to the plasma membrane (PMID:14754884)
- activation of Gardos channel at different oxygen tensions is correlated with changes in passive and active calcium transport and sensitivity to calcium (PMID:15039018)
- stochastic Ca2+ permeabilization rather than Gardos-channel variation is the main determinant selecting which sickle cells dehydrate through Gardos channels in each sickling episode (PMID:15339840)
- We present in this work a structural model of the open IKCa (KCa3.1) channel derived by homology modeling from the MthK channel structure, and used this model to compute the transmembrane potential profile along the channel pore. (PMID:15452196)
- first demonstration that gating of the iKCa1 potassium channel is regulated by beta2-adrenoceptors (PMID:15817638)
- Results describe the subcellular distribution of the canine (cIK1) and the human (hIK1) channel protein in different migrating cells. (PMID:15965951)
- phosphatidylinositol 3-phosphate and these 14 amino acids regulate KCa3.1 channel activity by recruiting an as yet to be defined regulatory subunit that is required for Ca2+ gating of KCa3.1 (PMID:16251351)
- H441 cells express KCNN4 and cellular potassium conductance is important to the control of Na(+) absorption in respiratory epithelium (PMID:16766578)
- KCa3.1 channels are a part of the signaling complex that forms at the IS upon antigen presentation. (PMID:17151145)
- We show that nucleoside diphosphate kinase B (NDPK-B), a mammalian histidine kinase, functions downstream of PI(3)P to activate KCa3.1 by phosphorylating histidine 358 in the carboxyl terminus of KCa3.1. (PMID:17157250)
- Increased activity of IKCa1 channel is necessary for the development of endometrial cancer. (PMID:17310992)
- S6 transmembrane segment of the open KCa3.1 channel contains two functional domains delimited by V282 with MTSEA and MTSET binding leading to a channel inhibition at V275, T278, and V282 and to a steep channel activation at positions A283 and A286 (PMID:17353352)
- KCNN4 activity decines sharply throughout the lifespan of human red blood cells. (PMID:17470662)
- The G(alphas)-coupled adenosine A2A receptor closes KCa3.1, providing a clearly defined mechanism by which adenosine inhibits human lung mast cell migration and degranulation. (PMID:17474152)
- KCa3.1 channels are important in human airway smooth muscle cell proliferation. (PMID:17585114)
- SK4 channels activity, underlying the Ca(2+)-dependent K(+) permeability was in particular increased by IL-13 (PMID:17762175)
- KCNN4 channels, possibly in parallel with volume-sensitive outwardly rectifying Cl channels, effect regulatory volume decrease in lens epithelial cells. (PMID:18184876)
- KCa3.1 and KCa2.3 are translocated out of the endoplasmic reticulum associated with Derlin-1. (PMID:18227067)
- KCa3.1 channels are not immobilized at the front but move in a diffuse way throughout the plasma membrane of migrating cells. (PMID:18287336)
- IK1 channel activity appears to mediate, at least in part, the response of epidermoid cancer cells to cisplatin treatment. (PMID:18367588)
- KCa3.1 channels play a critical role in transcellular chloride secretion and net fluid transport into the kidney cysts of patients with ADPKD by maintaining (PMID:18547995)
- KCa3.1 contributes to atherogenesis in mice and humans (PMID:18688283)
- An NH2-terminal multi-basic RKR motif is required for the ATP-dependent regulation of IK1. (PMID:18690018)
- findings show the G(s)-coupled EP(2) receptor closes K(Ca)3.1 in lung mast cells and attenuates both chemokine- and PGE(2)-dependent lung mast cell migration (PMID:18792407)
- the mammalian protein histidine phosphatase (PHPT-1) directly binds and inhibits KCa3.1 by dephosphorylating histidine 358 on KCa3.1 (PMID:18796614)
- Inhibition of the KCa3.1 channels by AMP-activated protein kinase in human airway epithelial cells. (PMID:19052260)
- overexpression of the IK(Ca1) channel is likely to promote carcinogenesis in human prostate tissue. (PMID:19270724)
- Data show that moderate increases of mitochondrial matrix [Ca(2+)] will cause mtK(Ca)3.1 opening, thus linking inner membrane K(+) permeability and transmembrane potential to Ca(2+) signalling. (PMID:19406468)
- The expression level of K(Ca)3.1 channels was similar in all T cell subsets in multiple sclerosis patients. (PMID:19409928)
- Data show that the class II phosphatidylinositol 3 kinase C2beta (PI3K-C2beta) is activated by the T-cell receptor (TCR) and functions upstream of NDPK-B to activate KCa3.1 channel activity. (PMID:19587117)
- Nitric oxide increases cardiac IK1 by nitrosylation of cysteine 76 of Kir2.1 channels. (PMID:19608980)
- The aim of this study was to investigate the relationship between single-nucleotide polymorphisms (SNPs) in the human KCNN4 gene or haplotypes and the incidence of myocardial infarction or cerebral infarction in Japanese. (PMID:19644414)
- Data demonstrate that bestrophin 1 is localized in the endoplasmic reticulum (ER), where it interacts with the ER-Ca(2+) sensor and can enhance Ca(2+) signaling and activation of Ca(2+)-dependent Cl(-) (TMEM16A) and K(+) (SK4) channels. (PMID:19823864)
- presence of mtKCa3.1 in tumor cell lines using biochemical and electrophysiological approaches (PMID:20036632)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | kcnn4 | ENSDARG00000086091 |
| mus_musculus | Kcnn4 | ENSMUSG00000054342 |
| rattus_norvegicus | Kcnn4 | ENSRNOG00000019440 |
| drosophila_melanogaster | SK | FBGN0029761 |
| caenorhabditis_elegans | WBGENE00007176 | |
| caenorhabditis_elegans | WBGENE00008265 | |
| caenorhabditis_elegans | kcnl-2 | WBGENE00008570 |
| caenorhabditis_elegans | WBGENE00015387 |
Paralogs (3): KCNN2 (ENSG00000080709), KCNN1 (ENSG00000105642), KCNN3 (ENSG00000143603)
Protein
Protein identifiers
Intermediate conductance calcium-activated potassium channel protein 4 — O15554 (reviewed: O15554)
Alternative names: Gardos channel, IKCa1, KCa3.1, Putative Gardos channel, hKCa4
All UniProt accessions (5): O15554, M0QZ70, M0R1J0, M0R2E8, M0R2F1
UniProt curated annotations — full annotation on UniProt →
Function. Intermediate conductance calcium-activated potassium channel that mediates the voltage-independent transmembrane transfer of potassium across the cell membrane through a constitutive interaction with calmodulin which binds the intracellular calcium allowing its opening. The current is characterized by a voltage-independent activation, an intracellular calcium concentration increase-dependent activation and a single-channel conductance of about 25 picosiemens. Also presents an inwardly rectifying current, thus reducing its already small outward conductance of potassium ions, which is particularly the case when the membrane potential displays positive values, above + 20 mV. Controls calcium influx during vascular contractility by being responsible of membrane hyperpolarization induced by vasoactive factors in proliferative vascular smooth muscle cell types. Following calcium influx, the consecutive activation of KCNN4 channel leads to a hyperpolarization of the cell membrane potential and hence an increase of the electrical driving force for further calcium influx promoting sustained calcium entry in response to stimulation with chemotactic peptides. Required for maximal calcium influx and proliferation during the reactivation of naive T-cells. Plays a role in the late stages of EGF-induced macropinocytosis through activation by PI(3)P.
Subunit / interactions. Homodimer. Homotetramer. Heterotetramer of potassium channel proteins. Interacts with MTMR6; this interaction leads to selective dephosphorylation of PI(3)P in a lipid microdomain adjacent to KCNN4, resulting in a decrease of intermediate conductance calcium-activated potassium channel activity. Interacts (via the C-tail domain) with CALM1; the calmodulin binding is constitutive, does not require calcium and mediates calcium-dependent gating and four calmodulin molecules bind to one channel tetramer.
Subcellular location. Cell membrane. Cell projection. Ruffle membrane.
Tissue specificity. Widely expressed in non-excitable tissues.
Post-translational modifications. Phosphorylation at His-358 by NDKB activates the intermediate conductance calcium-activated potassium channel activity, and conversely its dephosphorylation by PHPT1 inhibits this activity.
Disease relevance. Dehydrated hereditary stomatocytosis 2 (DHS2) [MIM:616689] An autosomal dominant hemolytic anemia characterized by primary erythrocyte dehydration. Erythrocytes exhibit decreased total cation and potassium content that are not accompanied by a proportional net gain of sodium and water. Affected individuals typically manifest mild to moderate compensated hemolytic anemia, with an increased erythrocyte mean corpuscular hemoglobin concentration and a decreased osmotic fragility, both of which reflect cellular dehydration. Their red cells exhibit a panel of various shape abnormalities such as elliptocytes, hemighosts, schizocytes, and very rare stomatocytic cells. Complications such as splenomegaly and cholelithiasis, resulting from increased red cell trapping in the spleen and elevated bilirubin levels, respectively, may occur. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. The channel is inhibited by clotrimazole and charybdotoxin but is insensitive to apamin.
Domain organisation. Transmembrane helices S5 and S6 form the ion channel pore, which is surrounded bymembrane embedded helices S1 to S4. The S4-S5 linker, which contains two distinct helices, undergoes conformational changes upon calmodulin binding to open the channel pore.
Induction. Up-regulated by phorbol myristate acetate (PMA) and phytohemagglutinin (PHA) in T-cells.
Similarity. Belongs to the potassium channel KCNN family. KCa3.1/KCNN4 subfamily.
RefSeq proteins (1): NP_002241* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004178 | CaM-bd_dom | Domain |
| IPR013099 | K_chnl_dom | Domain |
| IPR015449 | K_chnl_Ca-activ_SK | Family |
| IPR036122 | CaM-bd_dom_sf | Homologous_superfamily |
Pfam: PF02888, PF03530, PF07885
Catalyzed reactions (Rhea), 1 shown:
- K(+)(in) = K(+)(out) (RHEA:29463)
UniProt features (36 total): helix 15, transmembrane region 6, turn 4, sequence variant 3, mutagenesis site 2, chain 1, sequence conflict 1, strand 1, intramembrane region 1, region of interest 1, modified residue 1
Structure
Experimental structures (PDB)
17 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6D42 | X-RAY DIFFRACTION | 1.75 |
| 9ZRK | ELECTRON MICROSCOPY | 2.99 |
| 9O48 | ELECTRON MICROSCOPY | 3.1 |
| 9O5O | ELECTRON MICROSCOPY | 3.1 |
| 9O52 | ELECTRON MICROSCOPY | 3.18 |
| 9O53 | ELECTRON MICROSCOPY | 3.3 |
| 9ZRL | ELECTRON MICROSCOPY | 3.38 |
| 9ZPT | ELECTRON MICROSCOPY | 3.39 |
| 6CNM | ELECTRON MICROSCOPY | 3.4 |
| 9O51 | ELECTRON MICROSCOPY | 3.4 |
| 9YDZ | ELECTRON MICROSCOPY | 3.4 |
| 6CNN | ELECTRON MICROSCOPY | 3.5 |
| 9ED1 | ELECTRON MICROSCOPY | 3.5 |
| 9OA8 | ELECTRON MICROSCOPY | 3.59 |
| 9ZPO | ELECTRON MICROSCOPY | 3.67 |
| 6CNO | ELECTRON MICROSCOPY | 4.7 |
| 9Y5Q | ELECTRON MICROSCOPY | 4.73 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O15554-F1 | 84.55 | 0.51 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 358
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 250 | loss of sensitivity to triarylmethanes. |
| 275 | loss of sensitivity to triarylmethanes. |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-1296052 | Ca2+ activated K+ channels |
| R-HSA-112316 | Neuronal System |
| R-HSA-1296071 | Potassium Channels |
MSigDB gene sets: 790 (showing top):
GOBP_POTASSIUM_ION_TRANSPORT, GOBP_REGULATION_OF_T_CELL_RECEPTOR_SIGNALING_PATHWAY, GOBP_CHROMOSOME_ORGANIZATION, GOBP_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, GOBP_DIGESTION, TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP, GOBP_PINOCYTOSIS, GOBP_PROTEIN_HOMOTETRAMERIZATION, GOBP_REGULATION_OF_NUCLEAR_DIVISION, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, REACTOME_POTASSIUM_CHANNELS, GCM_NPM1, MODULE_64, MORF_UBE2I, GOBP_CELL_CYCLE_PHASE_TRANSITION
GO Biological Process (20): immune system process (GO:0002376), potassium ion transport (GO:0006813), calcium ion transport (GO:0006816), cell volume homeostasis (GO:0006884), defense response (GO:0006952), stabilization of membrane potential (GO:0030322), macropinocytosis (GO:0044351), phospholipid translocation (GO:0045332), saliva secretion (GO:0046541), positive regulation of protein secretion (GO:0050714), positive regulation of T cell receptor signaling pathway (GO:0050862), protein homotetramerization (GO:0051289), establishment of localization in cell (GO:0051649), potassium ion transmembrane transport (GO:0071805), positive regulation of potassium ion transmembrane transport (GO:1901381), regulation of calcium ion import across plasma membrane (GO:1905664), monoatomic ion transport (GO:0006811), monoatomic ion transmembrane transport (GO:0034220), regulation of transport (GO:0051049), regulation of biological quality (GO:0065008)
GO Molecular Function (8): potassium channel activity (GO:0005267), calmodulin binding (GO:0005516), calcium-activated potassium channel activity (GO:0015269), small conductance calcium-activated potassium channel activity (GO:0016286), protein phosphatase binding (GO:0019903), intermediate conductance calcium-activated potassium channel activity (GO:0022894), protein homodimerization activity (GO:0042803), protein binding (GO:0005515)
GO Cellular Component (9): cytosol (GO:0005829), plasma membrane (GO:0005886), voltage-gated potassium channel complex (GO:0008076), vesicle (GO:0031982), ruffle membrane (GO:0032587), neuron projection (GO:0043005), neuronal cell body (GO:0043025), membrane (GO:0016020), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Potassium Channels | 1 |
| Neuronal System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| metal ion transport | 2 |
| transport | 2 |
| calcium-activated potassium channel activity | 2 |
| biological_process | 1 |
| regulation of cell size | 1 |
| cellular homeostasis | 1 |
| response to stress | 1 |
| regulation of membrane potential | 1 |
| pinocytosis | 1 |
| phospholipid transport | 1 |
| lipid translocation | 1 |
| body fluid secretion | 1 |
| digestive system process | 1 |
| secretion by tissue | 1 |
| protein secretion | 1 |
| regulation of protein secretion | 1 |
| positive regulation of protein transport | 1 |
| positive regulation of secretion by cell | 1 |
| T cell receptor signaling pathway | 1 |
| regulation of T cell receptor signaling pathway | 1 |
| positive regulation of antigen receptor-mediated signaling pathway | 1 |
| protein homooligomerization | 1 |
| protein tetramerization | 1 |
| establishment of localization | 1 |
| cellular localization | 1 |
| potassium ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| positive regulation of potassium ion transport | 1 |
| potassium ion transmembrane transport | 1 |
| regulation of potassium ion transmembrane transport | 1 |
| positive regulation of cation transmembrane transport | 1 |
| regulation of calcium ion import | 1 |
| calcium ion import across plasma membrane | 1 |
| regulation of calcium ion transmembrane transport | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| regulation of localization | 1 |
| biological regulation | 1 |
| monoatomic cation channel activity | 1 |
Protein interactions and networks
STRING
1538 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KCNN4 | NME2 | P22392 | 931 |
| KCNN4 | CSN3 | P07498 | 912 |
| KCNN4 | KCNA3 | P22001 | 852 |
| KCNN4 | KCNMA1 | Q12791 | 827 |
| KCNN4 | CALML4 | Q96GE6 | 822 |
| KCNN4 | CALML6 | Q8TD86 | 821 |
| KCNN4 | CALML3 | P27482 | 821 |
| KCNN4 | CALML5 | Q9NZT1 | 821 |
| KCNN4 | KCNMB4 | Q86W47 | 761 |
| KCNN4 | CACNA1D | Q01668 | 753 |
| KCNN4 | PHPT1 | Q9NRX4 | 751 |
| KCNN4 | MTMR6 | Q9Y217 | 751 |
| KCNN4 | CALM1 | P02593 | 741 |
| KCNN4 | KCNA2 | P16389 | 735 |
| KCNN4 | KCNA1 | Q09470 | 730 |
IntAct
85 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TRDN | TMEM223 | psi-mi:“MI:0914”(association) | 0.640 |
| USE1 | NBAS | psi-mi:“MI:0914”(association) | 0.640 |
| CFTR | KCNN4 | psi-mi:“MI:0915”(physical association) | 0.600 |
| CFTR | KCNN4 | psi-mi:“MI:0403”(colocalization) | 0.600 |
| CALM1 | KCNN4 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| KCNN4 | CALM1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| STX1B | KCNN4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PMP22 | KCNN4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KCNN4 | SLC30A2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KCNN4 | GPR152 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KCNN4 | STX1B | psi-mi:“MI:0915”(physical association) | 0.560 |
| KCNN4 | FXYD3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KCNN4 | BIK | psi-mi:“MI:0915”(physical association) | 0.560 |
| KCNN4 | PMP22 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KCNN4 | CNIH3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM9 | ESYT2 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC39A4 | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| CREB3 | MYO9A | psi-mi:“MI:0914”(association) | 0.530 |
| TNFSF8 | LGALS8 | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS3 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS1 | LAMA5 | psi-mi:“MI:0914”(association) | 0.530 |
| CXCR4 | FANCA | psi-mi:“MI:0914”(association) | 0.530 |
| PBXIP1 | KCNN4 | psi-mi:“MI:0914”(association) | 0.530 |
| EVA1C | STK25 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (75): KCNN4 (Affinity Capture-MS), KCNN4 (Proximity Label-MS), KCNN4 (Two-hybrid), KCNN4 (Two-hybrid), KCNN4 (Two-hybrid), PMP22 (Two-hybrid), CNIH3 (Two-hybrid), SLC30A2 (Two-hybrid), GPR152 (Two-hybrid), KCNN4 (Proximity Label-MS), KCNN4 (Proximity Label-MS), KCNN4 (Proximity Label-MS), KCNN4 (Proximity Label-MS), KCNN4 (Proximity Label-MS), KCNN4 (Proximity Label-MS)
ESM2 similar proteins: A2BDX4, A4K2T1, A4K2Y2, D4AD53, O15554, O73606, O88454, O89109, P15388, P17971, P17972, P35739, P48547, P59053, P59994, P59995, P97557, Q03719, Q0P583, Q17ST2, Q52PG9, Q5RC10, Q60565, Q63881, Q6IVV8, Q6PIU1, Q7TN37, Q80XM3, Q8BZN2, Q8CFS6, Q8HYZ1, Q8IV77, Q8R1P5, Q8R523, Q8TAE7, Q8TD43, Q8TDN1, Q8TDN2, Q96RP8, Q9ERS0
Diamond homologs: O15554, O89109, P58390, P58391, P58392, P70604, P70605, P70606, Q02006, Q7KVW5, Q92952, Q9EQR3, Q9H2S1, Q9QYW1, Q9UGI6, A4K2M4, A4K2N8, A4K2P6, A4K2Q6, A4K2R3, A4K2S2, A4K2T1, A4K2V2, A4K2W6, A4K2X4, A4K2Y2, A6H8H5, B2RQA1, G5EFC3, O18868, O35173, O35174, O43525, O43526, O70344, O73606, O73925, O88758, O88759, O88943
SIGNOR signaling
10 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| NME2 | up-regulates | KCNN4 | phosphorylation |
| TRAM-34 | up-regulates | KCNN4 | “chemical activation” |
| Riluzole | “up-regulates activity” | KCNN4 | “chemical activation” |
| Naphtho[1,2-d]thiazol-2-amine | “up-regulates activity” | KCNN4 | “chemical activation” |
| nitrendipine | “down-regulates activity” | KCNN4 | “chemical inhibition” |
| clotrimazole | “down-regulates activity” | KCNN4 | “chemical inhibition” |
| PRKACA | “down-regulates activity” | KCNN4 | phosphorylation |
| PHPT1 | “down-regulates activity” | KCNN4 | dephosphorylation |
| KCNN4 | “up-regulates quantity” | calcium(2+) | relocalization |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 90 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Ion homeostasis | 6 | 20.7× | 2e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
258 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 2 |
| Uncertain significance | 143 |
| Likely benign | 34 |
| Benign | 34 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 252601 | NM_002250.3(KCNN4):c.1055G>A (p.Arg352His) | Pathogenic |
| 978810 | NM_002250.3(KCNN4):c.940T>C (p.Ser314Pro) | Pathogenic |
| 372185 | NM_002250.3(KCNN4):c.844G>A (p.Val282Met) | Likely pathogenic |
| 372186 | NM_002250.3(KCNN4):c.845T>A (p.Val282Glu) | Likely pathogenic |
SpliceAI
1639 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:43767545:A:AC | donor_gain | 1.0000 |
| 19:43767546:C:CC | donor_gain | 1.0000 |
| 19:43767548:TGG:T | donor_gain | 1.0000 |
| 19:43768958:AGTAC:A | donor_gain | 1.0000 |
| 19:43768959:GTAC:G | donor_loss | 1.0000 |
| 19:43768962:C:G | donor_loss | 1.0000 |
| 19:43769028:GGAAC:G | acceptor_gain | 1.0000 |
| 19:43769029:GAAC:G | acceptor_gain | 1.0000 |
| 19:43769030:AAC:A | acceptor_gain | 1.0000 |
| 19:43769031:AC:A | acceptor_gain | 1.0000 |
| 19:43769032:CC:C | acceptor_gain | 1.0000 |
| 19:43769032:CCTG:C | acceptor_loss | 1.0000 |
| 19:43769033:C:CC | acceptor_gain | 1.0000 |
| 19:43769033:CTGTG:C | acceptor_loss | 1.0000 |
| 19:43769034:T:G | acceptor_loss | 1.0000 |
| 19:43769713:TCTCA:T | donor_loss | 1.0000 |
| 19:43769714:CTCA:C | donor_loss | 1.0000 |
| 19:43769715:TCA:T | donor_loss | 1.0000 |
| 19:43769716:CA:C | donor_loss | 1.0000 |
| 19:43769717:ACC:A | donor_loss | 1.0000 |
| 19:43769718:C:CG | donor_loss | 1.0000 |
| 19:43769718:CCT:C | donor_gain | 1.0000 |
| 19:43769826:CACC:C | acceptor_gain | 1.0000 |
| 19:43769828:CC:C | acceptor_gain | 1.0000 |
| 19:43769829:CCTG:C | acceptor_gain | 1.0000 |
| 19:43769830:C:CC | acceptor_gain | 1.0000 |
| 19:43771994:ACTC:A | donor_loss | 1.0000 |
| 19:43771996:TCA:T | donor_loss | 1.0000 |
| 19:43771997:CACCA:C | donor_loss | 1.0000 |
| 19:43771998:A:AC | donor_gain | 1.0000 |
AlphaMissense
2732 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:43769829:C:G | G274R | 0.999 |
| 19:43769813:G:T | A279D | 0.998 |
| 19:43769828:C:T | G274D | 0.998 |
| 19:43772058:C:A | G254V | 0.998 |
| 19:43772064:C:T | G252D | 0.998 |
| 19:43772070:G:A | T250I | 0.998 |
| 19:43772073:A:G | L249P | 0.998 |
| 19:43772079:G:T | T247K | 0.998 |
| 19:43772095:A:G | W242R | 0.998 |
| 19:43772095:A:T | W242R | 0.998 |
| 19:43769823:A:G | C276R | 0.997 |
| 19:43769829:C:A | G274C | 0.997 |
| 19:43772007:C:T | G271E | 0.997 |
| 19:43772008:C:G | G271R | 0.997 |
| 19:43772008:C:T | G271R | 0.997 |
| 19:43772020:A:G | C267R | 0.997 |
| 19:43772058:C:T | G254D | 0.997 |
| 19:43772059:C:A | G254C | 0.997 |
| 19:43772064:C:A | G252V | 0.997 |
| 19:43772065:C:G | G252R | 0.997 |
| 19:43772085:G:C | P245R | 0.997 |
| 19:43774229:A:G | W216R | 0.997 |
| 19:43774229:A:T | W216R | 0.997 |
| 19:43769810:A:G | L280P | 0.996 |
| 19:43772018:G:C | C267W | 0.996 |
| 19:43772062:A:G | Y253H | 0.996 |
| 19:43772075:G:C | F248L | 0.996 |
| 19:43772075:G:T | F248L | 0.996 |
| 19:43772077:A:G | F248L | 0.996 |
| 19:43774293:G:C | F194L | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000373666 (19:43775781 T>C), RS1000601226 (19:43781118 G>A), RS1000651519 (19:43775992 G>A), RS1000750769 (19:43770316 T>C), RS1000953254 (19:43770130 C>T), RS1001019085 (19:43775828 G>A), RS1001312810 (19:43766699 G>C), RS1001319878 (19:43778482 G>A), RS1001345081 (19:43766932 C>A), RS1001407822 (19:43771673 C>A), RS1001451659 (19:43775494 A>G), RS1001620257 (19:43772679 G>A), RS1001734504 (19:43771892 G>A), RS1001796409 (19:43776151 A>T), RS1001889531 (19:43776295 ACT>A)
Disease associations
OMIM: gene MIM:602754 | disease phenotypes: MIM:616689, MIM:608647, MIM:194380
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| dehydrated hereditary stomatocytosis 2 | Strong | Autosomal dominant |
| dehydrated hereditary stomatocytosis | Supportive | Autosomal dominant |
| cystic fibrosis | Supportive | Autosomal recessive |
Mondo (5): dehydrated hereditary stomatocytosis 2 (MONDO:0014737), primary ciliary dyskinesia 5 (MONDO:0012088), dehydrated hereditary stomatocytosis with or without pseudohyperkalemia and/or perinatal edema (MONDO:0008689), dehydrated hereditary stomatocytosis (MONDO:0017910), cystic fibrosis (MONDO:0009061)
Orphanet (2): Dehydrated hereditary stomatocytosis (Orphanet:3202), Primary ciliary dyskinesia (Orphanet:244)
HPO phenotypes
73 total (30 of 73 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000246 | Sinusitis |
| HP:0000365 | Hearing impairment |
| HP:0000716 | Depression |
| HP:0000739 | Anxiety |
| HP:0000787 | Nephrolithiasis |
| HP:0000938 | Osteopenia |
| HP:0000939 | Osteoporosis |
| HP:0000952 | Jaundice |
| HP:0000969 | Edema |
| HP:0001046 | Intermittent jaundice |
| HP:0001081 | Cholelithiasis |
| HP:0001392 | Abnormality of the liver |
| HP:0001394 | Cirrhosis |
| HP:0001508 | Failure to thrive |
| HP:0001738 | Exocrine pancreatic insufficiency |
| HP:0001744 | Splenomegaly |
| HP:0001878 | Hemolytic anemia |
| HP:0001894 | Thrombocytosis |
| HP:0001900 | Increased circulating hemoglobin concentration |
| HP:0001901 | Polycythemia |
| HP:0001907 | Thromboembolism |
| HP:0001923 | Reticulocytosis |
| HP:0001927 | Acanthocytosis |
| HP:0001930 | Nonspherocytic hemolytic anemia |
| HP:0001972 | Macrocytic anemia |
| HP:0001981 | Schistocytosis |
| HP:0002020 | Gastroesophageal reflux |
| HP:0002024 | Malabsorption |
| HP:0002027 | Abdominal pain |
GWAS associations
26 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001937_27 | Breast cancer | 2.000000e-10 |
| GCST004602_276 | Mean corpuscular volume | 2.000000e-09 |
| GCST004605_81 | Mean corpuscular hemoglobin concentration | 1.000000e-27 |
| GCST004608_139 | Granulocyte percentage of myeloid white cells | 7.000000e-35 |
| GCST004609_152 | Monocyte percentage of white cells | 8.000000e-38 |
| GCST004615_125 | Hemoglobin concentration | 4.000000e-09 |
| GCST004625_216 | Monocyte count | 1.000000e-37 |
| GCST005992_38 | Mean corpuscular hemoglobin concentration | 5.000000e-12 |
| GCST006011_59 | Mean corpuscular volume | 2.000000e-08 |
| GCST006803_54 | Schizophrenia | 8.000000e-07 |
| GCST010083_275 | Hemoglobin levels | 2.000000e-16 |
| GCST010146_22 | Serum immune biomarker levels | 7.000000e-09 |
| GCST90002383_286 | Hematocrit | 2.000000e-10 |
| GCST90002384_454 | Hemoglobin | 8.000000e-23 |
| GCST90002391_116 | Mean corpuscular hemoglobin concentration | 6.000000e-43 |
| GCST90002392_76 | Mean corpuscular volume | 6.000000e-15 |
| GCST90002393_103 | Monocyte count | 1.000000e-10 |
| GCST90002393_662 | Monocyte count | 4.000000e-86 |
| GCST90002394_560 | Monocyte percentage of white cells | 6.000000e-68 |
| GCST90002395_412 | Mean platelet volume | 3.000000e-12 |
| GCST90002399_438 | Neutrophil percentage of white cells | 2.000000e-10 |
| GCST90002400_287 | Plateletcrit | 3.000000e-10 |
| GCST90002401_266 | Platelet distribution width | 7.000000e-13 |
| GCST90002403_301 | Red blood cell count | 2.000000e-20 |
| GCST90002405_551 | Reticulocyte count | 8.000000e-11 |
| GCST90002407_627 | White blood cell count | 1.000000e-13 |
EFO canonical traits (12, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004528 | mean corpuscular hemoglobin concentration |
| EFO:0007997 | granulocyte percentage of myeloid white cells |
| EFO:0007989 | monocyte percentage of leukocytes |
| EFO:0004509 | hemoglobin measurement |
| EFO:0005091 | monocyte count |
| EFO:0004872 | inflammatory biomarker measurement |
| EFO:0004348 | hematocrit |
| EFO:0007990 | neutrophil percentage of leukocytes |
| EFO:0007985 | platelet crit |
| EFO:0007984 | platelet component distribution width |
| EFO:0004305 | erythrocyte count |
| EFO:0007986 | reticulocyte count |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003550 | Cystic Fibrosis | C06.689.202; C08.381.187; C16.320.190; C16.614.213 |
| C563886 | Ciliary Dyskinesia, Primary, 5 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL4305 (SINGLE PROTEIN), CHEMBL4524132 (PROTEIN FAMILY)
Molecules with ChEMBL bioactivity
2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 56,489 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL104 | CLOTRIMAZOLE | 4 | 56,325 |
| CHEMBL405821 | SENICAPOC | 3 | 164 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: vgic — Calcium- and sodium-activated potassium channels (KCa, KNa)
Most potent curated ligand interactions (20 total), top 20:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| maurotoxin | Inhibition | 9.0 | pIC50 |
| charybdotoxin | Inhibition | 8.5 | pKd |
| DHP-103 | Channel blocker | 8.22 | pIC50 |
| NS6180 | Inhibition | 8.05 | pIC50 |
| NS309 | Agonist | 8.0 | pEC50 |
| compound rac-16 [PMID: 15603962] | Inhibition | 8.0 | pIC50 |
| TRAM-34 | Inhibition | 8.0 | pKd |
| senicapoc | Inhibition | 7.96 | pIC50 |
| clotrimazole | Inhibition | 7.62 | pKd |
| charybdotoxin-GLU32 analog | Inhibition | 7.5 | pKd |
| ASP-0819 | Activation | 7.03 | pEC50 |
| Ca2+ | Agonist | 7.0 | pEC50 |
| SKA-121 | Agonist | 6.96 | pEC50 |
| SKA-111 | Agonist | 6.95 | pEC50 |
| SKA-31 | Activator | 6.6 | pEC50 |
| DC-EBIO | Agonist | 6.1 | pEC50 |
| nitrendipine | Inhibition | 6.1 | pKd |
| riluzole | Activator | 5.7 | pIC50 |
| EBIO | Agonist | 4.5 | pEC50 |
| chlorzoxazone | Agonist | 4.0 | pEC50 |
Binding affinities (BindingDB)
111 measured of 111 human assays (111 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 2-[(4S)-4,5,5-tris(2-fluorophenyl)-2-oxo-1,3-oxazolidin-3-yl]acetamide | IC50 | 15 nM | US-9611232: Oxazolidinone and imidazolidinone compounds |
| 2-[(4S)-4-(2-fluorophenyl)-2-oxo-5,5-diphenyl-1,3-oxazolidin-3-yl]acetamide | IC50 | 15 nM | US-9611232: Oxazolidinone and imidazolidinone compounds |
| 2-[2-[2-[1-(2-fluorophenyl)tetrazol-5-yl]phenyl]phenoxy]acetonitrile | IC50 | 16 nM | US-9556132: Tetrazole derivatives and their use as potassium channel modulators |
| 5-[2-[2-(fluoromethyl)phenyl]phenyl]-1-(2-fluorophenyl)tetrazole | IC50 | 17 nM | US-9556132: Tetrazole derivatives and their use as potassium channel modulators |
| 2-[(4S)-4-(2-fluorophenyl)-5,5-bis(4-fluorophenyl)-2-oxo-1,3-oxazolidin-3-yl]acetamide | IC50 | 22 nM | US-9611232: Oxazolidinone and imidazolidinone compounds |
| 1-(2-fluorophenyl)-5-[2-[2-(2-methoxyethoxy)phenyl]phenyl]tetrazole | IC50 | 30 nM | US-9556132: Tetrazole derivatives and their use as potassium channel modulators |
| 5-[2-(2-ethoxyphenyl)phenyl]-1-(2-fluorophenyl)tetrazole | IC50 | 37 nM | US-9556132: Tetrazole derivatives and their use as potassium channel modulators |
| 4-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-1,1-dioxothieno[3,2-b][1,4]thiazin-3-one | IC50 | 39 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[1-[3-(trifluoromethyl)phenyl]ethyl]pyrido[3,2-b][1,4]thiazin-3-one | IC50 | 41 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 2-[(4S)-4-(2-fluorophenyl)-5,5-bis(3-fluorophenyl)-2-oxo-1,3-oxazolidin-3-yl]acetamide | IC50 | 42 nM | US-9611232: Oxazolidinone and imidazolidinone compounds |
| 2-[(4S)-4,5,5-tris(4-fluorophenyl)-2-oxo-1,3-oxazolidin-3-yl]acetamide | IC50 | 45 nM | US-9611232: Oxazolidinone and imidazolidinone compounds |
| 4-[[4-chloro-3-(trifluoromethyl)phenyl]methyl]pyrido[3,2-b][1,4]thiazin-3-one | IC50 | 46 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[[4-chloro-3-(trifluoromethylsulfonyl)phenyl]methyl]pyrido[3,2-b][1,4]thiazin-3-one | IC50 | 47 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 1-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-4,4-dioxothieno[2,3-b][1,4]thiazin-2-one | IC50 | 48 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-1,1-dioxopyrido[3,2-b][1,4]thiazin-3-one | IC50 | 49 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[[4-chloro-3-(trifluoromethylsulfanyl)phenyl]methyl]pyrido[3,2-b][1,4]thiazin-3-one | IC50 | 52 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[[3-(trifluoromethoxy)phenyl]methyl]pyrido[3,2-b][1,4]thiazin-3-one | IC50 | 52 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| US9556132, 30 | IC50 | 57 nM | US-9556132: Tetrazole derivatives and their use as potassium channel modulators |
| 1-(2-fluorophenyl)-5-[2-[2-(methoxymethyl)phenyl]phenyl]tetrazole | IC50 | 58 nM | US-9556132: Tetrazole derivatives and their use as potassium channel modulators |
| 2-[(4S)-5,5-bis(4-fluorophenyl)-2-oxo-4-phenyl-1,3-oxazolidin-3-yl]acetamide | IC50 | 58 nM | US-9611232: Oxazolidinone and imidazolidinone compounds |
| 7-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-[1,3]thiazolo[4,5-b][1,4]thiazin-6-one | IC50 | 60 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| ethyl 2-[(4R,5S)-4-(4-fluorophenyl)-2-oxo-5-[3-(trifluoromethyl)phenyl]-1,3-oxazolidin-3-yl]acetate | IC50 | 62 nM | US-9611232: Oxazolidinone and imidazolidinone compounds |
| 2-[(4S)-4-(2-chlorophenyl)-5,5-bis(4-fluorophenyl)-2-oxo-1,3-oxazolidin-3-yl]acetamide | IC50 | 63 nM | US-9611232: Oxazolidinone and imidazolidinone compounds |
| 2-[5-[2-(2-methoxyphenyl)phenyl]tetrazol-1-yl]benzonitrile | IC50 | 64 nM | US-9556132: Tetrazole derivatives and their use as potassium channel modulators |
| 4-[[4-chloro-3-(trifluoromethyl)phenyl]methyl]-6-(hydroxymethyl)pyrido[3,2-b][1,4]thiazin-3-one | IC50 | 66 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 2-methyl-4-[1-[3-(trifluoromethyl)phenyl]ethyl]-[1,3]thiazolo[5,4-b][1,4]thiazin-5-one | IC50 | 67 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 1-[2-(difluoromethoxy)phenyl]-5-[2-(2-methoxyphenyl)phenyl]tetrazole | IC50 | 69 nM | US-9556132: Tetrazole derivatives and their use as potassium channel modulators |
| 1,1-dioxo-4-[1-[3-(trifluoromethyl)phenyl]ethyl]thieno[3,2-b][1,4]thiazin-3-one | IC50 | 71 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 2-methyl-4-[[3-(trifluoromethyl)phenyl]methyl]-[1,3]thiazolo[5,4-b][1,4]thiazin-5-one | IC50 | 73 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[[4-chloro-3-(trifluoromethoxy)phenyl]methyl]-1,1-dioxopyrido[3,2-b][1,4]thiazin-3-one | IC50 | 77 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| methyl 4-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-1,1,3-trioxopyrido[3,2-b][1,4]thiazine-6-carboxylate | IC50 | 88 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 7-chloro-4-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-1,1-dioxopyrido[3,2-b][1,4]thiazin-3-one | IC50 | 92 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-7,7-dioxo-2-propan-2-yl-[1,3]thiazolo[5,4-b][1,4]thiazin-5-one | IC50 | 96 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 7-chloro-1,1-dioxo-4-[1-[3-(trifluoromethyl)phenyl]ethyl]pyrido[3,2-b][1,4]thiazin-3-one | IC50 | 110 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-7,7-dioxo-[1,3]thiazolo[5,4-b][1,4]thiazin-5-one | IC50 | 110 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 1-(2-fluorophenyl)-5-[2-(2-methoxyphenyl)phenyl]tetrazole | IC50 | 110 nM | US-9556132: Tetrazole derivatives and their use as potassium channel modulators |
| US9556132, 31 | IC50 | 110 nM | US-9556132: Tetrazole derivatives and their use as potassium channel modulators |
| 1,1-dioxo-4-[1-[3-(trifluoromethyl)phenyl]ethyl]pyrido[3,2-b][1,4]thiazin-3-one | IC50 | 120 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| methyl 2,4,4-trioxo-1-[1-[3-(trifluoromethyl)phenyl]ethyl]thieno[2,3-b][1,4]thiazine-6-carboxylate | IC50 | 120 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 7-chloro-4-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]pyrido[3,2-b][1,4]thiazin-3-one | IC50 | 130 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[1-[4-chloro-3-(trifluoromethyl)phenyl]ethyl]-1,1-dioxopyrido[3,2-b][1,4]thiazin-3-one | IC50 | 140 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| methyl 2,4,4-trioxo-1-[[3-(trifluoromethoxy)phenyl]methyl]thieno[2,3-b][1,4]thiazine-6-carboxylate | IC50 | 150 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 7-[[3-(trifluoromethoxy)phenyl]methyl]-[1,3]thiazolo[4,5-b][1,4]thiazin-6-one | IC50 | 160 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-1,1-dioxopyrazino[2,3-b][1,4]thiazin-3-one | IC50 | 170 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 7-[1-[3-(trifluoromethyl)phenyl]ethyl]-[1,3]thiazolo[4,5-b][1,4]thiazin-6-one | IC50 | 170 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[[4-chloro-3-(trifluoromethyl)phenyl]methyl]-1,1-dioxopyrido[3,2-b][1,4]thiazin-3-one | IC50 | 180 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 7-chloro-4-[[4-chloro-3-(trifluoromethyl)phenyl]methyl]-1,1-dioxopyrido[3,2-b][1,4]thiazin-3-one | IC50 | 180 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 4-[[4-chloro-3-(trifluoromethyl)phenyl]methyl]-3-oxopyrido[3,2-b][1,4]thiazine-6-carboxamide | IC50 | 180 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| methyl 2,4,4-trioxo-1-[[3-(trifluoromethyl)phenyl]methyl]thieno[2,3-b][1,4]thiazine-6-carboxylate | IC50 | 190 nM | US-9533999: Fused thiazin-3-ones as KCA3.1 inhibitors |
| 1-(2-fluorophenyl)-5-[2-[2-(methoxymethoxy)phenyl]phenyl]tetrazole | IC50 | 190 nM | US-9556132: Tetrazole derivatives and their use as potassium channel modulators |
ChEMBL bioactivities
172 potent at pChembl≥5 of 180 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.22 | IC50 | 6 | nM | SENICAPOC |
| 8.09 | IC50 | 8.1 | nM | CHEMBL4744833 |
| 8.07 | IC50 | 8.6 | nM | CHEMBL4749039 |
| 8.06 | IC50 | 8.7 | nM | CHEMBL4791725 |
| 8.05 | IC50 | 9 | nM | CHEMBL42205 |
| 8.00 | IC50 | 10 | nM | CHEMBL272039 |
| 7.92 | IC50 | 12 | nM | SENICAPOC |
| 7.89 | IC50 | 13 | nM | CHEMBL260736 |
| 7.85 | IC50 | 14 | nM | CHEMBL270704 |
| 7.85 | IC50 | 14 | nM | CHEMBL272040 |
| 7.85 | IC50 | 14 | nM | CHEMBL4788143 |
| 7.82 | IC50 | 15 | nM | CHEMBL408700 |
| 7.82 | IC50 | 15 | nM | CHEMBL270071 |
| 7.82 | IC50 | 15 | nM | CHEMBL273092 |
| 7.82 | IC50 | 15 | nM | CHEMBL5765097 |
| 7.82 | IC50 | 15 | nM | CHEMBL5981960 |
| 7.80 | IC50 | 16 | nM | CHEMBL5855158 |
| 7.77 | IC50 | 17 | nM | CHEMBL260953 |
| 7.77 | IC50 | 17 | nM | CHEMBL5773163 |
| 7.75 | IC50 | 18 | nM | CHEMBL4756080 |
| 7.70 | IC50 | 20 | nM | CHEMBL406683 |
| 7.70 | IC50 | 20 | nM | CHEMBL498270 |
| 7.66 | IC50 | 22 | nM | CHEMBL5899835 |
| 7.62 | IC50 | 24 | nM | CHEMBL4764429 |
| 7.52 | IC50 | 30 | nM | CHEMBL261828 |
| 7.52 | IC50 | 30 | nM | CHEMBL261606 |
| 7.52 | IC50 | 30 | nM | CHEMBL5852642 |
| 7.47 | IC50 | 34 | nM | CHEMBL270913 |
| 7.43 | IC50 | 37 | nM | CHEMBL5865173 |
| 7.41 | IC50 | 39 | nM | CHEMBL3287207 |
| 7.41 | IC50 | 39 | nM | CHEMBL5783315 |
| 7.40 | IC50 | 40 | nM | CHEMBL258604 |
| 7.39 | IC50 | 41 | nM | CHEMBL3287210 |
| 7.38 | IC50 | 42 | nM | CHEMBL5994146 |
| 7.35 | IC50 | 45 | nM | CHEMBL6034068 |
| 7.34 | IC50 | 46 | nM | CHEMBL5775918 |
| 7.33 | IC50 | 47 | nM | CHEMBL4745327 |
| 7.33 | IC50 | 47 | nM | CHEMBL5960938 |
| 7.32 | IC50 | 48 | nM | CHEMBL3287208 |
| 7.31 | IC50 | 49 | nM | CHEMBL3287205 |
| 7.28 | IC50 | 52 | nM | CHEMBL3287209 |
| 7.28 | IC50 | 52 | nM | CHEMBL4743839 |
| 7.28 | IC50 | 52 | nM | CHEMBL5961215 |
| 7.24 | IC50 | 58 | nM | CHEMBL5976036 |
| 7.24 | IC50 | 57 | nM | CHEMBL5876740 |
| 7.24 | IC50 | 58 | nM | CHEMBL6055879 |
| 7.22 | IC50 | 60 | nM | CHEMBL3287212 |
| 7.22 | IC50 | 60 | nM | CHEMBL6058552 |
| 7.21 | IC50 | 62 | nM | CHEMBL5979285 |
| 7.20 | IC50 | 63 | nM | CHEMBL5746247 |
PubChem BioAssay actives
58 with measured affinity, of 110 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2,2-bis(4-fluorophenyl)-2-phenylacetamide | 726263: Inhibition of Kca 3.1 (unknown origin) | ic50 | 0.0060 | uM |
| methyl N-[1-[4-fluoro-3-(trifluoromethyl)phenyl]cyclopropyl]-N-[[(2R)-1-methylpyrrolidin-2-yl]methyl]carbamate | 1678548: Inhibition of Kca3.1 in human erythrocytes | ic50 | 0.0081 | uM |
| methyl N-(2-amino-2-methylpropyl)-N-[1-[4-fluoro-3-(trifluoromethyl)phenyl]cyclopropyl]carbamate | 1678548: Inhibition of Kca3.1 in human erythrocytes | ic50 | 0.0086 | uM |
| methyl N-[1-[4-fluoro-3-(trifluoromethoxy)phenyl]cyclopropyl]-N-[[(2S)-pyrrolidin-2-yl]methyl]carbamate | 1678548: Inhibition of Kca3.1 in human erythrocytes | ic50 | 0.0087 | uM |
| 2-(2-fluorophenyl)-2-(4-fluorophenyl)-2-phenylacetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0090 | uM |
| 2-(2-fluorophenyl)-2,2-bis(4-fluorophenyl)acetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0100 | uM |
| 2,2,2-tris(3-fluorophenyl)acetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0130 | uM |
| 1-N-(cyclopropylmethyl)-1-N-[1-[4-fluoro-3-(trifluoromethyl)phenyl]cyclopropyl]-2-methylpropane-1,2-diamine | 1678548: Inhibition of Kca3.1 in human erythrocytes | ic50 | 0.0140 | uM |
| 2-(3,4-difluorophenyl)-2,2-diphenylacetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0140 | uM |
| 2,2,2-tris(4-fluorophenyl)acetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0140 | uM |
| 2,2-bis(3-fluorophenyl)-2-(4-fluorophenyl)acetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0150 | uM |
| 2-(2-fluorophenyl)-2,2-diphenylacetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0150 | uM |
| 2,2-bis(2-fluorophenyl)-2-(4-fluorophenyl)acetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0150 | uM |
| 2-(3-fluorophenyl)-2,2-bis(4-fluorophenyl)acetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0170 | uM |
| 1-N-cyclobutyl-2-methyl-1-N-[1-[3-(trifluoromethyl)phenyl]cyclopropyl]propane-1,2-diamine | 1678548: Inhibition of Kca3.1 in human erythrocytes | ic50 | 0.0180 | uM |
| (2-chlorophenyl)-diphenylmethanamine | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0200 | uM |
| 1-[(2-chlorophenyl)-diphenylmethyl]pyrazole | 397426: Inhibition of human cloned IK1 expressed in african green monkey COS7 cells by whole cell patch clamp assay | ic50 | 0.0200 | uM |
| 1-N-cyclopropyl-2-methyl-1-N-[1-[3-(trifluoromethyl)phenyl]cyclopropyl]propane-1,2-diamine | 1678548: Inhibition of Kca3.1 in human erythrocytes | ic50 | 0.0240 | uM |
| 2,2-bis(3-fluorophenyl)-2-phenylacetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0300 | uM |
| 2,2-bis(2-fluorophenyl)-2-phenylacetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0300 | uM |
| 2-(2,4-difluorophenyl)-2,2-diphenylacetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0340 | uM |
| 4-[1-[4-fluoro-3-(trifluoromethoxy)phenyl]ethyl]-1,1-dioxothieno[3,2-b][1,4]thiazin-3-one | 1154717: Inhibition of human KCa3.1 overexpressed in HEK293 cells assessed as thallium influx preincubated for 15 mins followed by thallium/ionomycin addition measured for 50 secs by FLIPR assay | ic50 | 0.0390 | uM |
| 2-(4-fluorophenyl)-2,2-diphenylacetamide | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0400 | uM |
| 4-[1-[3-(trifluoromethyl)phenyl]ethyl]pyrido[3,2-b][1,4]thiazin-3-one | 1154717: Inhibition of human KCa3.1 overexpressed in HEK293 cells assessed as thallium influx preincubated for 15 mins followed by thallium/ionomycin addition measured for 50 secs by FLIPR assay | ic50 | 0.0410 | uM |
| ethyl N-(2-amino-2-methylpropyl)-N-[1-[4-fluoro-3-(trifluoromethyl)phenyl]cyclopropyl]carbamate | 1678548: Inhibition of Kca3.1 in human erythrocytes | ic50 | 0.0470 | uM |
| 1-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-4,4-dioxothieno[2,3-b][1,4]thiazin-2-one | 1154717: Inhibition of human KCa3.1 overexpressed in HEK293 cells assessed as thallium influx preincubated for 15 mins followed by thallium/ionomycin addition measured for 50 secs by FLIPR assay | ic50 | 0.0480 | uM |
| 4-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-1,1-dioxopyrido[3,2-b][1,4]thiazin-3-one | 1154717: Inhibition of human KCa3.1 overexpressed in HEK293 cells assessed as thallium influx preincubated for 15 mins followed by thallium/ionomycin addition measured for 50 secs by FLIPR assay | ic50 | 0.0490 | uM |
| ethyl N-[1-[4-fluoro-3-(trifluoromethyl)phenyl]cyclopropyl]-N-[[(2S)-pyrrolidin-2-yl]methyl]carbamate | 1678548: Inhibition of Kca3.1 in human erythrocytes | ic50 | 0.0520 | uM |
| 4-[[3-(trifluoromethoxy)phenyl]methyl]pyrido[3,2-b][1,4]thiazin-3-one | 1154717: Inhibition of human KCa3.1 overexpressed in HEK293 cells assessed as thallium influx preincubated for 15 mins followed by thallium/ionomycin addition measured for 50 secs by FLIPR assay | ic50 | 0.0520 | uM |
| 7-[1-[4-fluoro-3-(trifluoromethoxy)phenyl]ethyl]-[1,3]thiazolo[4,5-b][1,4]thiazin-6-one | 1154717: Inhibition of human KCa3.1 overexpressed in HEK293 cells assessed as thallium influx preincubated for 15 mins followed by thallium/ionomycin addition measured for 50 secs by FLIPR assay | ic50 | 0.0600 | uM |
| 4-[[4-chloro-3-(trifluoromethyl)phenyl]methyl]-6-(hydroxymethyl)pyrido[3,2-b][1,4]thiazin-3-one | 1154717: Inhibition of human KCa3.1 overexpressed in HEK293 cells assessed as thallium influx preincubated for 15 mins followed by thallium/ionomycin addition measured for 50 secs by FLIPR assay | ic50 | 0.0660 | uM |
| triphenylmethanamine | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.0700 | uM |
| Clotrimazole | 397426: Inhibition of human cloned IK1 expressed in african green monkey COS7 cells by whole cell patch clamp assay | ic50 | 0.0700 | uM |
| N-(2-amino-2-methylpropyl)-N-[1-[4-fluoro-3-(trifluoromethyl)phenyl]cyclopropyl]methanesulfonamide | 1678548: Inhibition of Kca3.1 in human erythrocytes | ic50 | 0.0750 | uM |
| methyl N-(2-amino-2-methylpropyl)-N-[1-[4-fluoro-3-(trifluoromethoxy)phenyl]cyclopropyl]carbamate | 1678548: Inhibition of Kca3.1 in human erythrocytes | ic50 | 0.0920 | uM |
| 4-[[4-fluoro-3-(trifluoromethoxy)phenyl]methyl]-7,7-dioxo-2-propan-2-yl-[1,3]thiazolo[5,4-b][1,4]thiazin-5-one | 1154717: Inhibition of human KCa3.1 overexpressed in HEK293 cells assessed as thallium influx preincubated for 15 mins followed by thallium/ionomycin addition measured for 50 secs by FLIPR assay | ic50 | 0.0960 | uM |
| methyl 2,2,2-triphenylacetate | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.3300 | uM |
| 3-[diphenylphosphoryl(phenyl)methyl]pyridine | 724065: Inhibition of IK channel (unknown origin) | ic50 | 0.5000 | uM |
| N-methyl-1,1,1-triphenylmethanamine | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 0.5500 | uM |
| 3-[diphenylphosphoryl(pyridin-3-yl)methyl]pyridine | 724065: Inhibition of IK channel (unknown origin) | ic50 | 1.0000 | uM |
| 5-(3-chlorobenzoyl)-6H-benzo[d][1]benzazepin-7-one | 397426: Inhibition of human cloned IK1 expressed in african green monkey COS7 cells by whole cell patch clamp assay | ic50 | 1.3000 | uM |
| 5-(4-chlorophenyl)sulfonyl-6H-benzo[d][1]benzazepin-7-one | 397426: Inhibition of human cloned IK1 expressed in african green monkey COS7 cells by whole cell patch clamp assay | ic50 | 1.4000 | uM |
| N-tritylethanamine | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 1.7500 | uM |
| 3-[diphenylphosphoryl(piperidin-1-yl)methyl]pyridine | 724065: Inhibition of IK channel (unknown origin) | ic50 | 1.8000 | uM |
| 5-(4-methylphenyl)sulfonyl-6H-benzo[d][1]benzazepin-7-one | 397426: Inhibition of human cloned IK1 expressed in african green monkey COS7 cells by whole cell patch clamp assay | ic50 | 2.1000 | uM |
| 5-thiophen-2-ylsulfonyl-6H-benzo[d][1]benzazepin-7-one | 397426: Inhibition of human cloned IK1 expressed in african green monkey COS7 cells by whole cell patch clamp assay | ic50 | 2.4000 | uM |
| 3-[diphenylphosphoryl(propyl)amino]benzonitrile | 724065: Inhibition of IK channel (unknown origin) | ic50 | 2.7000 | uM |
| N,N-dimethyl-1,1,1-triphenylmethanamine | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 3.1500 | uM |
| 2-trityl-4,5-dihydro-1,3-oxazole | 315276: Inhibition of Gardos channel in human RBC assessed as inhibition of ionomycin-stimulated [86Rb] efflux | ic50 | 4.3000 | uM |
| 1-[2-(3-chlorophenyl)-3-pyridinyl]-N-diphenylphosphorylmethanamine | 724065: Inhibition of IK channel (unknown origin) | ic50 | 4.9000 | uM |
CTD chemical–gene interactions
66 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| (+)-JQ1 compound | decreases expression | 3 |
| Clotrimazole | affects cotreatment, decreases reaction, increases activity, decreases activity | 3 |
| Estradiol | affects expression, affects cotreatment, decreases expression | 3 |
| 7,8-benzoquinoline | increases activity | 2 |
| 4-chlorobenzo(f)isoquinoline | increases activity | 2 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 2 |
| Benzo(a)pyrene | increases expression, affects methylation | 2 |
| Calcium | affects abundance, affects reaction, increases transport | 2 |
| Hydrogen Peroxide | affects expression, increases expression | 2 |
| Potassium | affects reaction, increases transport, affects transport | 2 |
| Tamoxifen | affects expression, affects cotreatment, decreases expression | 2 |
| Charybdotoxin | decreases reaction, increases activity, decreases activity | 2 |
| Raloxifene Hydrochloride | decreases expression, affects expression, affects cotreatment | 2 |
| aristolochic acid I | increases expression | 1 |
| TL8-506 | affects cotreatment, increases expression | 1 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | affects cotreatment, decreases methylation | 1 |
| beta-lapachone | increases expression | 1 |
| arsenite | decreases methylation | 1 |
| methylparaben | decreases expression | 1 |
| afimoxifene | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| benzo(f)quinoline | increases activity | 1 |
| pentanal | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
ChEMBL screening assays
27 unique, capped per target: 27 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1032478 | Binding | Inhibition of human cloned IK1 expressed in african green monkey COS7 cells by whole cell patch clamp assay | Inhibitors of potassium channels KV1.3 and IK-1 as immunosuppressants. — Bioorg Med Chem Lett |
Cellosaurus cell lines
2 cell lines: 1 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1V2 | Abcam HeLa KCNN4 KO | Cancer cell line | Female |
| CVCL_E9Y2 | HEK293-KCNN4-RFP | Transformed cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00157690 | PHASE4 | COMPLETED | Study of Alendronate to Prevent and Treat Osteoporosis in Cystic Fibrosis Patients |
| NCT00208078 | PHASE4 | TERMINATED | Effect of Non-Invasive Ventilation in Cystic Fibrosis Patient With Chronic Respiratory Failure. |
| NCT00244270 | PHASE4 | COMPLETED | Cystic Fibrosis and Totally Implantable Vascular Access Devices |
| NCT00333385 | PHASE4 | TERMINATED | Continuous Versus Short Infusions of Ceftazidime in Cystic Fibrosis |
| NCT00411736 | PHASE4 | COMPLETED | Scandinavian Cystic Fibrosis Azithromycin Study |
| NCT00418470 | PHASE4 | TERMINATED | Prolonging the Duration of Peripheral Venous Catheters in Cystic Fibrosis People |
| NCT00431964 | PHASE4 | COMPLETED | Effect of Azithromycin on Lung Function in 6-18 Year-olds With Cystic Fibrosis (CF) Not Infected With P. Aeruginosa |
| NCT00434278 | PHASE4 | TERMINATED | A Trial of Pulmozyme Withdrawal on Exercise Tolerance in Cystic Fibrosis Subjects With Severe Lung Disease (TOPIC) |
| NCT00483769 | PHASE4 | COMPLETED | One Year Glargine Treatment in CFRD Children and Adolescents |
| NCT00528190 | PHASE4 | COMPLETED | Treatment of Aspergillus Fumigatus (a Fungal Infection) in Patients With Cystic Fibrosis |
| NCT00557089 | PHASE4 | COMPLETED | The Effect of rhDNase on Ventilation Inhomogeneity in Patients With Cystic Fibrosis |
| NCT00572975 | PHASE4 | COMPLETED | Malabsorption Blood Test:Toward a Novel Approach to Quantify Steatorrhea |
| NCT00680316 | PHASE4 | TERMINATED | A Study of Pulmozyme® (Dornase Alpha) in 3- to 5-Year-Old Patients With Cystic Fibrosis |
| NCT00685035 | PHASE4 | COMPLETED | Comparison of Airway Clearance Therapy in Cystic Fibrosis Using the Same VEST Therapy Device But With Different Settings |
| NCT00744250 | PHASE4 | TERMINATED | Intraduodenal Aspiration Study to Assess the Bioavailability of Oral Pancrecarb® Compared to Placebo Control |
| NCT00787917 | PHASE4 | TERMINATED | An Exploratory Study to Assess Multiple Doses of Omalizumab in Patients With Cystic Fibrosis Complicated by Acute Bronchopulmonary Aspergillosis (ABPA) |
| NCT00843817 | PHASE4 | COMPLETED | RhDNase and Biodistribution of PMN Serine Proteases in Cystic Fibrosis Sputum |
| NCT00890370 | PHASE4 | COMPLETED | Should Any One Airway Clearance Technique be Recommended for People With Cystic Fibrosis? |
| NCT00996424 | PHASE4 | TERMINATED | The Effect of Inhaled N-Acetylcysteine Compared to Normal Saline on Sputum Rheology and Lung Function |
| NCT01044719 | PHASE4 | UNKNOWN | Duration of Antibiotics in Infective Exacerbations of Cystic Fibrosis |
| NCT01100606 | PHASE4 | COMPLETED | A Study to Evaluate the Mode of Administration and Safety of EUR-1008 (APT-1008) in Infants 1 to 12 Months of Age |
| NCT01131507 | PHASE4 | COMPLETED | PR-018: An Open-Label, Safety Extension of Study PR-011 |
| NCT01207245 | PHASE4 | COMPLETED | Circadian Rhythm In Tobramycin Elimination In Cystic Fibrosis |
| NCT01323101 | PHASE4 | COMPLETED | Doxycycline Effects on Inflammation in Cystic Fibrosis |
| NCT01327703 | PHASE4 | COMPLETED | Control of Steatorrhea in Participants With Cystic Fibrosis and Exocrine Pancreatic Insufficiency |
| NCT01377792 | PHASE4 | COMPLETED | Study of Long-term Treatment With Hypertonic Saline in Patients With Cystic Fibrosis |
| NCT01400750 | PHASE4 | COMPLETED | Comparison of 2 Treatment Regimens for Eradication of P Aeruginosa Infection in Children With Cystic Fibrosis |
| NCT01429259 | PHASE4 | COMPLETED | Population Pharmacokinetics of Prolonged Infusion Meropenem in Cystic Fibrosis (CF) Children |
| NCT01608555 | PHASE4 | COMPLETED | Tobramycin 300 mg Once-a-day (o.d.) Aerosol in Adults With Cystic Fibrosis |
| NCT01667094 | PHASE4 | UNKNOWN | A Study Comparing Continuous Infusion Antibiotics to Standard Treatment for Lung Infections in Cystic Fibrosis |
| NCT01694069 | PHASE4 | TERMINATED | Continuous Infusion Piperacillin-tazobactam for the Treatment of Cystic Fibrosis |
| NCT01702415 | PHASE4 | WITHDRAWN | Zoledronic Acid in Cystic Fibrosis |
| NCT01712334 | PHASE4 | COMPLETED | A Study of the Comparable Efficacy and Safety of Pulmozyme (Dornase Alfa) Delivered by the eRapid Nebulizer System in Patients With Cystic Fibrosis |
| NCT01737983 | PHASE4 | COMPLETED | Effect of Lactobacillus Reuteri in Cystic Fibrosis |
| NCT01844778 | PHASE4 | COMPLETED | Ease of Use and Microbial Contamination of Tobramycin Inhalation Powder (TIP) Versus Nebulised Tobramycin Inhalation Solution (TIS) and Nebulised Colistimethate (COLI) |
| NCT01880346 | PHASE4 | COMPLETED | Comparison of Absorption of Vitamin D in Cystic Fibrosis |
| NCT01882400 | PHASE4 | COMPLETED | Assessment of Response to Treatment of Osteoporosis With Oral Bisphosphonates in Patients With Muscular Dystrophy |
| NCT01937325 | PHASE4 | UNKNOWN | CPET in CF Patients With One G551D Mutation Taking VX770 |
| NCT02015663 | PHASE4 | TERMINATED | Tobramycin Inhalation Powder (TIP) Administered Once Daily Continuously Versus TIP Administered BID in 28 Day on / 28 Day Off Cycles |
| NCT02048592 | PHASE4 | UNKNOWN | Impact of Immunonutrition on the Patients With Cystic Fibrosis |
Related Atlas pages
- Associated diseases: dehydrated hereditary stomatocytosis 2, dehydrated hereditary stomatocytosis, cystic fibrosis
- Targeted by drugs: Calcium, Chlorzoxazone, Clotrimazole, Nitrendipine, Riluzole, Senicapoc
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cystic fibrosis, dehydrated hereditary stomatocytosis, dehydrated hereditary stomatocytosis 2, dehydrated hereditary stomatocytosis with or without pseudohyperkalemia and/or perinatal edema, primary ciliary dyskinesia 5