KCNQ5-DT

Summary

KCNQ5-DT (KCNQ5 divergent transcript, HGNC:55469) is a long non-coding RNA gene on chromosome 6q13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55469
Approved symbol	KCNQ5-DT
Name	KCNQ5 divergent transcript
Location	6q13
Locus type	RNA, long non-coding
Status	Approved
Aliases	CATG00000088862.1
Ensembl gene	ENSG00000285844
Ensembl biotype	lncRNA
Entrez	112267960
RNAcentral	URS00026A209D — lncRNA, 2018 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000649228, ENST00000664828

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000649228 — 3 exons

Exon	Start	End
ENSE00003832240	72614386	72616073
ENSE00003833535	72617851	72618006
ENSE00003833679	72619980	72622073

Expression profiles

Bgee: expression breadth broad, 63 present calls, max score 65.65.

Top tissues by expression

63 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
prefrontal cortex	UBERON:0000451	65.65	gold quality
skeletal muscle tissue	UBERON:0001134	64.94	gold quality
superior frontal gyrus	UBERON:0002661	64.17	gold quality
cortical plate	UBERON:0005343	63.93	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.55	gold quality
frontal cortex	UBERON:0001870	59.52	gold quality
primary visual cortex	UBERON:0002436	59.02	gold quality
muscle of leg	UBERON:0001383	56.75	gold quality
cerebral cortex	UBERON:0000956	55.70	gold quality
gastrocnemius	UBERON:0001388	55.62	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	53.94	gold quality
Brodmann (1909) area 9	UBERON:0013540	53.15	gold quality
anterior cingulate cortex	UBERON:0009835	52.79	gold quality
brain	UBERON:0000955	52.39	gold quality
right atrium auricular region	UBERON:0006631	51.28	silver quality
multicellular organism	UBERON:0000468	50.68	gold quality
urinary bladder	UBERON:0001255	50.07	silver quality
nucleus accumbens	UBERON:0001882	50.00	gold quality
bone marrow	UBERON:0002371	49.93	silver quality
right frontal lobe	UBERON:0002810	49.24	gold quality
right hemisphere of cerebellum	UBERON:0014890	48.91	gold quality
cerebellar hemisphere	UBERON:0002245	48.67	gold quality
lymph node	UBERON:0000029	47.84	silver quality
vermiform appendix	UBERON:0001154	47.39	silver quality
Ammon’s horn	UBERON:0001954	47.32	gold quality
descending thoracic aorta	UBERON:0002345	46.39	gold quality
tonsil	UBERON:0002372	46.36	gold quality
substantia nigra	UBERON:0002038	46.22	gold quality
thoracic aorta	UBERON:0001515	46.09	gold quality
ascending aorta	UBERON:0001496	45.96	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.